RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CCER2I3L3R5 266 aa12.77□□□□□ -0.36
CLIP1-214ENST00000540539 TAF7LQ5H9L4 462 aa12.77□□□□□ -0.37
CLIP1-214ENST00000540539 FRAT1Q92837 279 aaPredicted RBP12.77□□□□□ -0.37
CLIP1-214ENST00000540539 PPM1GO15355 546 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-214ENST00000540539 RANGAP1P46060 587 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-214ENST00000540539 DDX10Q13206 875 aaKnown RBP12.76□□□□□ -0.37
CLIP1-214ENST00000540539 DHX57Q6P158 1386 aaKnown RBP12.75□□□□□ -0.37
CLIP1-214ENST00000540539 CEP162Q5TB80 1403 aa12.75□□□□□ -0.37
CLIP1-214ENST00000540539 KIAA0586Q9BVV6 1533 aa12.75□□□□□ -0.37
CLIP1-214ENST00000540539 HSP90AA1P07900 732 aaKnown RBP12.75□□□□□ -0.37
CLIP1-214ENST00000540539 DCAF11Q8TEB1 546 aa12.75□□□□□ -0.37
CLIP1-214ENST00000540539 PRDM4Q9UKN5 801 aa12.75□□□□□ -0.37
CLIP1-214ENST00000540539 IQGAP2Q13576 1575 aa12.74□□□□□ -0.37
CLIP1-214ENST00000540539 RRAGDQ9NQL2 400 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-214ENST00000540539 CLIP1P30622 1438 aa12.71□□□□□ -0.38
CLIP1-214ENST00000540539 OSCARQ8IYS5 282 aa12.71□□□□□ -0.38
CLIP1-214ENST00000540539 NAP1L5Q96NT1 182 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-214ENST00000540539 RGS3P49796 1198 aa12.69□□□□□ -0.38
CLIP1-214ENST00000540539 CLASP1Q7Z460 1538 aa12.68□□□□□ -0.38
CLIP1-214ENST00000540539 PPP1R15AO75807 674 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-214ENST00000540539 CALD1Q05682 793 aaKnown RBP12.68□□□□□ -0.38
CLIP1-214ENST00000540539 JPH4Q96JJ6 628 aa12.68□□□□□ -0.38
CLIP1-214ENST00000540539 UGGT2Q9NYU1 1516 aa12.67□□□□□ -0.38
CLIP1-214ENST00000540539 HNRNPUQ00839 825 aaKnown RBP eCLIP12.67□□□□□ -0.38
CLIP1-214ENST00000540539 ARHGAP35Q9NRY4 1499 aa12.66□□□□□ -0.38
CLIP1-214ENST00000540539 ANP32CO43423 234 aa12.65□□□□□ -0.38
CLIP1-214ENST00000540539 NPM2Q86SE8 214 aaKnown RBP12.65□□□□□ -0.38
CLIP1-214ENST00000540539 NAP1L2Q9ULW6 460 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-214ENST00000540539 EFCAB5A4FU69 1503 aa12.65□□□□□ -0.38
CLIP1-214ENST00000540539 NFKBIBQ15653 356 aa12.65□□□□□ -0.39
CLIP1-214ENST00000540539 SAMD9Q5K651 1589 aa12.64□□□□□ -0.39
CLIP1-214ENST00000540539 P3H3Q8IVL6 736 aa12.64□□□□□ -0.39
CLIP1-214ENST00000540539 SHROOM2Q13796 1616 aa12.64□□□□□ -0.39
CLIP1-214ENST00000540539 PAXIP1Q6ZW49 1069 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-214ENST00000540539 BBXQ8WY36 941 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-214ENST00000540539 DISP1Q96F81 1524 aa12.62□□□□□ -0.39
CLIP1-214ENST00000540539 ARAP1Q96P48 1450 aa12.62□□□□□ -0.39
CLIP1-214ENST00000540539 PRG4Q92954 1404 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-214ENST00000540539 CHMP4BQ9H444 224 aaKnown RBP12.62□□□□□ -0.39
CLIP1-214ENST00000540539 GTF2E1P29083 439 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-214ENST00000540539 PNNQ9H307 717 aaKnown RBP12.61□□□□□ -0.39
CLIP1-214ENST00000540539 KIAA0556O60303 1618 aa12.61□□□□□ -0.39
CLIP1-214ENST00000540539 FHOD3Q2V2M9 1422 aa12.61□□□□□ -0.39
CLIP1-214ENST00000540539 CENPJQ9HC77 1338 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-214ENST00000540539 CARMIL2Q6F5E8 1435 aa12.6□□□□□ -0.39
CLIP1-214ENST00000540539 NCBP3Q53F19 620 aaKnown RBP12.58□□□□□ -0.4
CLIP1-214ENST00000540539 SIN3AQ96ST3 1273 aa12.58□□□□□ -0.4
CLIP1-214ENST00000540539 ERCC6L2Q5T890 1561 aa12.57□□□□□ -0.4
CLIP1-214ENST00000540539 RSPH4AQ5TD94 716 aa12.56□□□□□ -0.4
CLIP1-214ENST00000540539 PDCL3Q9H2J4 239 aa12.55□□□□□ -0.4
CLIP1-214ENST00000540539 VPS8Q8N3P4 1428 aa12.55□□□□□ -0.4
CLIP1-214ENST00000540539 STAC3Q96MF2 364 aa12.54□□□□□ -0.4
CLIP1-214ENST00000540539 CLCN1P35523 988 aa12.54□□□□□ -0.4
CLIP1-214ENST00000540539 FMN1Q68DA7 1419 aa12.53□□□□□ -0.4
CLIP1-214ENST00000540539 IPO4Q8TEX9 1081 aaKnown RBP12.52□□□□□ -0.41
CLIP1-214ENST00000540539 PTPRGP23470 1445 aa12.51□□□□□ -0.41
CLIP1-214ENST00000540539 PPP4R3CPQ6ZMV5 832 aa12.51□□□□□ -0.41
CLIP1-214ENST00000540539 CANXP27824 592 aaKnown RBP12.5□□□□□ -0.41
CLIP1-214ENST00000540539 ARID4BQ4LE39 1312 aaPredicted RBP12.5□□□□□ -0.41
CLIP1-214ENST00000540539 PCF11O94913 1555 aaKnown RBP12.49□□□□□ -0.41
CLIP1-214ENST00000540539 ARHGEF11O15085 1522 aa12.49□□□□□ -0.41
CLIP1-214ENST00000540539 ARXQ96QS3 562 aa12.49□□□□□ -0.41
CLIP1-214ENST00000540539 ATP1B4Q9UN42 357 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-214ENST00000540539 CASKIN1Q8WXD9 1431 aa12.48□□□□□ -0.41
CLIP1-214ENST00000540539 FRAT2O75474 233 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-214ENST00000540539 PLB1Q6P1J6 1458 aa12.47□□□□□ -0.41
CLIP1-214ENST00000540539 PDE4AP27815 886 aa12.47□□□□□ -0.41
CLIP1-214ENST00000540539 FYCO1Q9BQS8 1478 aa12.46□□□□□ -0.41
CLIP1-214ENST00000540539 ZNF326Q5BKZ1 582 aaKnown RBP12.46□□□□□ -0.42
CLIP1-214ENST00000540539 RIMBP3CA6NJZ7 1639 aa12.46□□□□□ -0.42
CLIP1-214ENST00000540539 RIMBP3BA6NNM3 1639 aa12.46□□□□□ -0.42
CLIP1-214ENST00000540539 RAPGEF6Q8TEU7 1601 aa12.46□□□□□ -0.42
CLIP1-214ENST00000540539 RIMBP3Q9UFD9 1639 aa12.46□□□□□ -0.42
CLIP1-214ENST00000540539 HIRIP3Q9BW71 556 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-214ENST00000540539 DDRGK1Q96HY6 314 aa12.45□□□□□ -0.42
CLIP1-214ENST00000540539 BACH2Q9BYV9 841 aa12.45□□□□□ -0.42
CLIP1-214ENST00000540539 ABCA8O94911 1581 aa12.44□□□□□ -0.42
CLIP1-214ENST00000540539 NPM3O75607 178 aaKnown RBP12.44□□□□□ -0.42
CLIP1-214ENST00000540539 FOXD1Q16676 465 aa12.44□□□□□ -0.42
CLIP1-214ENST00000540539 HECW1Q76N89 1606 aa12.43□□□□□ -0.42
CLIP1-214ENST00000540539 UACAQ9BZF9 1416 aa12.43□□□□□ -0.42
CLIP1-214ENST00000540539 CNGB1Q14028 1251 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-214ENST00000540539 ZHX1Q9UKY1 873 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-214ENST00000540539 TPM2P07951 284 aa12.42□□□□□ -0.42
CLIP1-214ENST00000540539 SLC4A3P48751 1232 aa12.42□□□□□ -0.42
CLIP1-214ENST00000540539 LRRIQ1Q96JM4 1722 aa12.42□□□□□ -0.42
CLIP1-214ENST00000540539 NUP153P49790 1475 aaKnown RBP12.42□□□□□ -0.42
CLIP1-214ENST00000540539 ARID3CA6NKF2 412 aa12.41□□□□□ -0.42
CLIP1-214ENST00000540539 TCERG1O14776 1098 aaKnown RBP12.41□□□□□ -0.42
CLIP1-214ENST00000540539 L1TD1Q5T7N2 865 aaKnown RBP12.4□□□□□ -0.42
CLIP1-214ENST00000540539 ABCC2Q92887 1545 aa12.4□□□□□ -0.42
CLIP1-214ENST00000540539 DHX37Q8IY37 1157 aaKnown RBP12.4□□□□□ -0.42
CLIP1-214ENST00000540539 POGKQ9P215 609 aa12.4□□□□□ -0.42
CLIP1-214ENST00000540539 AKNAQ7Z591 1439 aa12.4□□□□□ -0.43
CLIP1-214ENST00000540539 EPRSP07814 1512 aaKnown RBP12.39□□□□□ -0.43
CLIP1-214ENST00000540539 MAPKBP1O60336 1514 aa12.39□□□□□ -0.43
CLIP1-214ENST00000540539 SMAP1Q8IYB5 467 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-214ENST00000540539 ZBED9Q6R2W3 1325 aa12.39□□□□□ -0.43
CLIP1-214ENST00000540539 CYB5RLQ6IPT4 315 aa12.38□□□□□ -0.43
CLIP1-214ENST00000540539 UHRF1BP1LA0JNW5 1464 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms