RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 MTUS2Q5JR59 1369 aa13.18□□□□□ -0.3
CTNNA1-243ENST00000540387 CCDC18Q5T9S5 1454 aa13.17□□□□□ -0.3
CTNNA1-243ENST00000540387 ATP10BO94823 1461 aa13.17□□□□□ -0.3
CTNNA1-243ENST00000540387 ARHGEF11O15085 1522 aa13.17□□□□□ -0.3
CTNNA1-243ENST00000540387 FOXD1Q16676 465 aa13.16□□□□□ -0.3
CTNNA1-243ENST00000540387 PAK3O75914 559 aaPredicted RBP13.16□□□□□ -0.3
CTNNA1-243ENST00000540387 CYB5RLQ6IPT4 315 aa13.15□□□□□ -0.3
CTNNA1-243ENST00000540387 MAGI3Q5TCQ9 1506 aa13.14□□□□□ -0.31
CTNNA1-243ENST00000540387 CFAP43Q8NDM7 1665 aa13.14□□□□□ -0.31
CTNNA1-243ENST00000540387 PLEKHD1A6NEE1 506 aa13.14□□□□□ -0.31
CTNNA1-243ENST00000540387 ABCC2Q92887 1545 aa13.13□□□□□ -0.31
CTNNA1-243ENST00000540387 RTL5Q5HYW3 569 aaPredicted RBP13.13□□□□□ -0.31
CTNNA1-243ENST00000540387 TRIM52Q96A61 297 aa13.11□□□□□ -0.31
CTNNA1-243ENST00000540387 UHRF1BP1LA0JNW5 1464 aa13.11□□□□□ -0.31
CTNNA1-243ENST00000540387 PLPPR3Q6T4P5 718 aa13.11□□□□□ -0.31
CTNNA1-243ENST00000540387 PHLDB1Q86UU1 1377 aa13.1□□□□□ -0.31
CTNNA1-243ENST00000540387 RIMBP3CA6NJZ7 1639 aa13.09□□□□□ -0.31
CTNNA1-243ENST00000540387 RIMBP3BA6NNM3 1639 aa13.09□□□□□ -0.31
CTNNA1-243ENST00000540387 RIMBP3Q9UFD9 1639 aa13.09□□□□□ -0.31
CTNNA1-243ENST00000540387 TROQ12816 1431 aaPredicted RBP13.08□□□□□ -0.32
CTNNA1-243ENST00000540387 PLEKHG5O94827 1062 aa13.08□□□□□ -0.32
CTNNA1-243ENST00000540387 EHBP1L1Q8N3D4 1523 aa13.07□□□□□ -0.32
CTNNA1-243ENST00000540387 KDM5BQ9UGL1 1544 aa13.07□□□□□ -0.32
CTNNA1-243ENST00000540387 NCOA2Q15596 1464 aa13.07□□□□□ -0.32
CTNNA1-243ENST00000540387 ADCY10Q96PN6 1610 aa13.07□□□□□ -0.32
CTNNA1-243ENST00000540387 DHX57Q6P158 1386 aaKnown RBP13.06□□□□□ -0.32
CTNNA1-243ENST00000540387 NPM1P06748 294 aaKnown RBP eCLIP13.06□□□□□ -0.32
CTNNA1-243ENST00000540387 IRX6P78412 446 aaPredicted RBP13.06□□□□□ -0.32
CTNNA1-243ENST00000540387 CCNB3Q8WWL7 1395 aa13.02□□□□□ -0.32
CTNNA1-243ENST00000540387 ZCCHC11Q5TAX3 1644 aaKnown RBP13.02□□□□□ -0.32
CTNNA1-243ENST00000540387 RRBP1Q9P2E9 1410 aaKnown RBP13.02□□□□□ -0.33
CTNNA1-243ENST00000540387 SUPT6HQ7KZ85 1726 aaKnown RBP13.02□□□□□ -0.33
CTNNA1-243ENST00000540387 FAM50AQ14320 339 aaKnown RBP13.02□□□□□ -0.33
CTNNA1-243ENST00000540387 C11orf95C9JLR9 678 aaPredicted RBP13.01□□□□□ -0.33
CTNNA1-243ENST00000540387 PODXL2Q9NZ53 605 aa13.01□□□□□ -0.33
CTNNA1-243ENST00000540387 WASHC2AQ641Q2 1341 aa13.01□□□□□ -0.33
CTNNA1-243ENST00000540387 MYOM3Q5VTT5 1437 aa13□□□□□ -0.33
CTNNA1-243ENST00000540387 KIF14Q15058 1648 aa13□□□□□ -0.33
CTNNA1-243ENST00000540387 DDX10Q13206 875 aaKnown RBP12.99□□□□□ -0.33
CTNNA1-243ENST00000540387 FGD6Q6ZV73 1430 aa12.99□□□□□ -0.33
CTNNA1-243ENST00000540387 ASXL2Q76L83 1435 aa12.99□□□□□ -0.33
CTNNA1-243ENST00000540387 CCER2I3L3R5 266 aa12.98□□□□□ -0.33
CTNNA1-243ENST00000540387 PPP4R2Q9NY27 417 aa12.98□□□□□ -0.33
CTNNA1-243ENST00000540387 CFDP1Q9UEE9 299 aaPredicted RBP12.97□□□□□ -0.33
CTNNA1-243ENST00000540387 GPATCH8Q9UKJ3 1502 aaKnown RBP12.97□□□□□ -0.33
CTNNA1-243ENST00000540387 ZNF644Q9H582 1327 aaPredicted RBP12.97□□□□□ -0.33
CTNNA1-243ENST00000540387 ABCC10Q5T3U5 1492 aa12.97□□□□□ -0.33
CTNNA1-243ENST00000540387 IPO9Q96P70 1041 aaKnown RBP12.96□□□□□ -0.33
CTNNA1-243ENST00000540387 WDR7Q9Y4E6 1490 aa12.96□□□□□ -0.33
CTNNA1-243ENST00000540387 DNAJC5Q9H3Z4 198 aa12.96□□□□□ -0.33
CTNNA1-243ENST00000540387 ZNF777Q9ULD5 760 aaPredicted RBP12.96□□□□□ -0.33
CTNNA1-243ENST00000540387 WASHC2CQ9Y4E1 1318 aa12.95□□□□□ -0.34
CTNNA1-243ENST00000540387 ZBTB47Q9UFB7 747 aaPredicted RBP12.94□□□□□ -0.34
CTNNA1-243ENST00000540387 TIMELESSQ9UNS1 1208 aa12.94□□□□□ -0.34
CTNNA1-243ENST00000540387 MIA2Q96PC5 1412 aa12.93□□□□□ -0.34
CTNNA1-243ENST00000540387 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.93□□□□□ -0.34
CTNNA1-243ENST00000540387 BRPF3Q9ULD4 1205 aa12.93□□□□□ -0.34
CTNNA1-243ENST00000540387 ANP32AP39687 249 aaKnown RBP12.93□□□□□ -0.34
CTNNA1-243ENST00000540387 PPP1R15AO75807 674 aaPredicted RBP12.91□□□□□ -0.34
CTNNA1-243ENST00000540387 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.91□□□□□ -0.34
CTNNA1-243ENST00000540387 RSPH6AQ9H0K4 717 aa12.91□□□□□ -0.34
CTNNA1-243ENST00000540387 B4GALNT3Q6L9W6 998 aa12.9□□□□□ -0.34
CTNNA1-243ENST00000540387 ZMYND15Q9H091 742 aa12.9□□□□□ -0.34
CTNNA1-243ENST00000540387 TTC37Q6PGP7 1564 aa12.9□□□□□ -0.34
CTNNA1-243ENST00000540387 PTPN23Q9H3S7 1636 aa12.89□□□□□ -0.35
CTNNA1-243ENST00000540387 GLIPR1L2Q4G1C9 344 aa12.89□□□□□ -0.35
CTNNA1-243ENST00000540387 ANP32CO43423 234 aa12.88□□□□□ -0.35
CTNNA1-243ENST00000540387 TCOF1Q13428 1488 aaKnown RBP12.88□□□□□ -0.35
CTNNA1-243ENST00000540387 PLCH2O75038 1416 aa12.88□□□□□ -0.35
CTNNA1-243ENST00000540387 PTPRKQ15262 1439 aa12.87□□□□□ -0.35
CTNNA1-243ENST00000540387 HNRNPMP52272 730 aaKnown RBP eCLIP12.87□□□□□ -0.35
CTNNA1-243ENST00000540387 USP35Q9P2H5 1018 aa12.87□□□□□ -0.35
CTNNA1-243ENST00000540387 CHIC2Q9UKJ5 165 aa12.87□□□□□ -0.35
CTNNA1-243ENST00000540387 MAPKBP1O60336 1514 aa12.87□□□□□ -0.35
CTNNA1-243ENST00000540387 CDC42BPAQ5VT25 1732 aa12.87□□□□□ -0.35
CTNNA1-243ENST00000540387 NEFMP07197 916 aa12.86□□□□□ -0.35
CTNNA1-243ENST00000540387 EFCAB2Q5VUJ9 269 aa12.86□□□□□ -0.35
CTNNA1-243ENST00000540387 FAM69CQ0P6D2 419 aa12.85□□□□□ -0.35
CTNNA1-243ENST00000540387 VSIG10Q8N0Z9 540 aa12.85□□□□□ -0.35
CTNNA1-243ENST00000540387 CAMSAP2Q08AD1 1489 aa12.85□□□□□ -0.35
CTNNA1-243ENST00000540387 ARHGAP5Q13017 1502 aa12.85□□□□□ -0.35
CTNNA1-243ENST00000540387 HNRNPUQ00839 825 aaKnown RBP eCLIP12.85□□□□□ -0.35
CTNNA1-243ENST00000540387 ITSN2Q9NZM3 1697 aa12.84□□□□□ -0.35
CTNNA1-243ENST00000540387 CD109Q6YHK3 1445 aa12.84□□□□□ -0.35
CTNNA1-243ENST00000540387 CDC42BPBQ9Y5S2 1711 aa12.83□□□□□ -0.35
CTNNA1-243ENST00000540387 ABCC5O15440 1437 aa12.83□□□□□ -0.36
CTNNA1-243ENST00000540387 PREX2Q70Z35 1606 aa12.82□□□□□ -0.36
CTNNA1-243ENST00000540387 ABCA9Q8IUA7 1624 aa12.82□□□□□ -0.36
CTNNA1-243ENST00000540387 RRP7BPQ9NSQ0 103 aa12.81□□□□□ -0.36
CTNNA1-243ENST00000540387 DAPK1P53355 1430 aa12.81□□□□□ -0.36
CTNNA1-243ENST00000540387 LAS1LQ9Y4W2 734 aaKnown RBP12.81□□□□□ -0.36
CTNNA1-243ENST00000540387 MYO5CQ9NQX4 1742 aa12.81□□□□□ -0.36
CTNNA1-243ENST00000540387 SAMD9LQ8IVG5 1584 aa12.8□□□□□ -0.36
CTNNA1-243ENST00000540387 MBD5Q9P267 1494 aa12.8□□□□□ -0.36
CTNNA1-243ENST00000540387 TSPY4P0CV99 314 aa12.79□□□□□ -0.36
CTNNA1-243ENST00000540387 TSPY10P0CW01 314 aa12.79□□□□□ -0.36
CTNNA1-243ENST00000540387 FANCAO15360 1455 aa12.79□□□□□ -0.36
CTNNA1-243ENST00000540387 ARHGEF12Q9NZN5 1544 aa12.78□□□□□ -0.36
CTNNA1-243ENST00000540387 RSPH4AQ5TD94 716 aa12.78□□□□□ -0.36
CTNNA1-243ENST00000540387 AFAP1Q8N556 730 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms