RNA–Protein interactions for RNA: ENST00000539847.1

CCDC60-204, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CCDC60, Length 581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-204ENST00000539847 KIAA0556O60303 1618 aa11.82□□□□□ -0.52
CCDC60-204ENST00000539847 HAP1P54257 671 aaPredicted RBP11.82□□□□□ -0.52
CCDC60-204ENST00000539847 GOLGA3Q08378 1498 aa11.82□□□□□ -0.52
CCDC60-204ENST00000539847 MAGI3Q5TCQ9 1506 aa11.81□□□□□ -0.52
CCDC60-204ENST00000539847 ZCCHC11Q5TAX3 1644 aaKnown RBP11.8□□□□□ -0.52
CCDC60-204ENST00000539847 ILDR1Q86SU0 546 aaPredicted RBP11.79□□□□□ -0.52
CCDC60-204ENST00000539847 CD109Q6YHK3 1445 aa11.77□□□□□ -0.52
CCDC60-204ENST00000539847 DSG3P32926 999 aa11.76□□□□□ -0.53
CCDC60-204ENST00000539847 BCANQ96GW7 911 aa11.76□□□□□ -0.53
CCDC60-204ENST00000539847 PHLDB1Q86UU1 1377 aa11.76□□□□□ -0.53
CCDC60-204ENST00000539847 ABCA8O94911 1581 aa11.75□□□□□ -0.53
CCDC60-204ENST00000539847 CFAP43Q8NDM7 1665 aa11.75□□□□□ -0.53
CCDC60-204ENST00000539847 FAM9AQ8IZU1 332 aaPredicted RBP11.74□□□□□ -0.53
CCDC60-204ENST00000539847 ARAP3Q8WWN8 1544 aa11.73□□□□□ -0.53
CCDC60-204ENST00000539847 PRXQ9BXM0 1461 aa11.73□□□□□ -0.53
CCDC60-204ENST00000539847 HECW2Q9P2P5 1572 aa11.73□□□□□ -0.53
CCDC60-204ENST00000539847 ZNF692Q9BU19 519 aaPredicted RBP11.72□□□□□ -0.53
CCDC60-204ENST00000539847 PKD2Q13563 968 aa11.71□□□□□ -0.53
CCDC60-204ENST00000539847 CTTNBP2Q8WZ74 1663 aa11.7□□□□□ -0.54
CCDC60-204ENST00000539847 KCNH8Q96L42 1107 aa11.68□□□□□ -0.54
CCDC60-204ENST00000539847 VSIG10Q8N0Z9 540 aa11.67□□□□□ -0.54
CCDC60-204ENST00000539847 ATP10BO94823 1461 aa11.65□□□□□ -0.54
CCDC60-204ENST00000539847 NEO1Q92859 1461 aa11.65□□□□□ -0.54
CCDC60-204ENST00000539847 PRKCSHP14314 528 aaPredicted RBP11.65□□□□□ -0.54
CCDC60-204ENST00000539847 KLHL34Q8N239 644 aa11.64□□□□□ -0.55
CCDC60-204ENST00000539847 ABCA9Q8IUA7 1624 aa11.64□□□□□ -0.55
CCDC60-204ENST00000539847 TAOK2Q9UL54 1235 aa11.63□□□□□ -0.55
CCDC60-204ENST00000539847 SSUH2Q9Y2M2 353 aa11.62□□□□□ -0.55
CCDC60-204ENST00000539847 SPDYE2BA6NHP3 402 aa11.61□□□□□ -0.55
CCDC60-204ENST00000539847 SPDYE6P0CI01 402 aa11.61□□□□□ -0.55
CCDC60-204ENST00000539847 SPDYE2Q495Y8 402 aa11.61□□□□□ -0.55
CCDC60-204ENST00000539847 PTPRMP28827 1452 aa11.6□□□□□ -0.55
CCDC60-204ENST00000539847 FBXO41Q8TF61 875 aa11.6□□□□□ -0.55
CCDC60-204ENST00000539847 ADAMTSL3P82987 1691 aa11.59□□□□□ -0.55
CCDC60-204ENST00000539847 SAMD9Q5K651 1589 aa11.59□□□□□ -0.55
CCDC60-204ENST00000539847 SPOCK2Q92563 424 aa11.59□□□□□ -0.55
CCDC60-204ENST00000539847 KIF21BO75037 1637 aa11.59□□□□□ -0.55
CCDC60-204ENST00000539847 ACIN1Q9UKV3 1341 aaKnown RBP11.59□□□□□ -0.55
CCDC60-204ENST00000539847 STAG3Q9UJ98 1225 aa11.58□□□□□ -0.56
CCDC60-204ENST00000539847 RAPGEF3O95398 923 aa11.56□□□□□ -0.56
CCDC60-204ENST00000539847 EEA1Q15075 1411 aa11.56□□□□□ -0.56
CCDC60-204ENST00000539847 RAPGEF6Q8TEU7 1601 aa11.56□□□□□ -0.56
CCDC60-204ENST00000539847 FHOD3Q2V2M9 1422 aa11.55□□□□□ -0.56
CCDC60-204ENST00000539847 NUP153P49790 1475 aaKnown RBP11.55□□□□□ -0.56
CCDC60-204ENST00000539847 PLCD3Q8N3E9 789 aa11.54□□□□□ -0.56
CCDC60-204ENST00000539847 DENND4BO75064 1496 aaPredicted RBP11.53□□□□□ -0.56
CCDC60-204ENST00000539847 PLEKHD1A6NEE1 506 aa11.53□□□□□ -0.56
CCDC60-204ENST00000539847 CENPBP07199 599 aaPredicted RBP11.53□□□□□ -0.56
CCDC60-204ENST00000539847 P3H3Q8IVL6 736 aa11.53□□□□□ -0.56
CCDC60-204ENST00000539847 ARHGEF40Q8TER5 1519 aa11.53□□□□□ -0.56
CCDC60-204ENST00000539847 PCF11O94913 1555 aaKnown RBP11.53□□□□□ -0.56
CCDC60-204ENST00000539847 FRMPD1Q5SYB0 1578 aa11.53□□□□□ -0.56
CCDC60-204ENST00000539847 POGZQ7Z3K3 1410 aa11.52□□□□□ -0.56
CCDC60-204ENST00000539847 BCORL1Q5H9F3 1711 aa11.52□□□□□ -0.56
CCDC60-204ENST00000539847 MAGI2Q86UL8 1455 aa11.52□□□□□ -0.56
CCDC60-204ENST00000539847 MIER1Q8N108 512 aa11.52□□□□□ -0.57
CCDC60-204ENST00000539847 LMTK3Q96Q04 1460 aa11.51□□□□□ -0.57
CCDC60-204ENST00000539847 ARID3CA6NKF2 412 aa11.51□□□□□ -0.57
CCDC60-204ENST00000539847 ARID4BQ4LE39 1312 aaPredicted RBP11.51□□□□□ -0.57
CCDC60-204ENST00000539847 AKNAQ7Z591 1439 aa11.51□□□□□ -0.57
CCDC60-204ENST00000539847 ZMYM4Q5VZL5 1548 aa11.5□□□□□ -0.57
CCDC60-204ENST00000539847 CFAP74Q9C0B2 1584 aa11.5□□□□□ -0.57
CCDC60-204ENST00000539847 ECM2O94769 699 aaPredicted RBP11.5□□□□□ -0.57
CCDC60-204ENST00000539847 FANCAO15360 1455 aa11.49□□□□□ -0.57
CCDC60-204ENST00000539847 EFCAB5A4FU69 1503 aa11.49□□□□□ -0.57
CCDC60-204ENST00000539847 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.48□□□□□ -0.57
CCDC60-204ENST00000539847 MADDQ8WXG6 1647 aa11.48□□□□□ -0.57
CCDC60-204ENST00000539847 BBXQ8WY36 941 aaPredicted RBP11.47□□□□□ -0.57
CCDC60-204ENST00000539847 RICTORQ6R327 1708 aa11.46□□□□□ -0.57
CCDC60-204ENST00000539847 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.45□□□□□ -0.58
CCDC60-204ENST00000539847 KDM2AQ9Y2K7 1162 aa11.45□□□□□ -0.58
CCDC60-204ENST00000539847 ZFYVE16Q7Z3T8 1539 aa11.45□□□□□ -0.58
CCDC60-204ENST00000539847 TPRNQ4KMQ1 711 aa11.44□□□□□ -0.58
CCDC60-204ENST00000539847 PLCH2O75038 1416 aa11.43□□□□□ -0.58
CCDC60-204ENST00000539847 RGL2O15211 777 aa11.41□□□□□ -0.58
CCDC60-204ENST00000539847 NEUROD1Q13562 356 aa11.41□□□□□ -0.58
CCDC60-204ENST00000539847 DIEXFQ68CQ4 756 aaKnown RBP11.41□□□□□ -0.58
CCDC60-204ENST00000539847 CDK11AQ9UQ88 783 aaPredicted RBP11.41□□□□□ -0.58
CCDC60-204ENST00000539847 YEATS2Q9ULM3 1422 aa11.41□□□□□ -0.58
CCDC60-204ENST00000539847 TTC37Q6PGP7 1564 aa11.41□□□□□ -0.58
CCDC60-204ENST00000539847 RIMS1Q86UR5 1692 aaKnown RBP11.4□□□□□ -0.58
CCDC60-204ENST00000539847 ATP10AO60312 1499 aa11.4□□□□□ -0.58
CCDC60-204ENST00000539847 CACNB1Q02641 598 aaPredicted RBP11.4□□□□□ -0.58
CCDC60-204ENST00000539847 EFCAB2Q5VUJ9 269 aa11.4□□□□□ -0.58
CCDC60-204ENST00000539847 CCER1Q8TC90 406 aaPredicted RBP11.4□□□□□ -0.58
CCDC60-204ENST00000539847 FMN1Q68DA7 1419 aa11.4□□□□□ -0.58
CCDC60-204ENST00000539847 SCAPERQ9BY12 1400 aa11.4□□□□□ -0.58
CCDC60-204ENST00000539847 C9orf84Q5VXU9 1444 aa11.39□□□□□ -0.59
CCDC60-204ENST00000539847 PAXIP1Q6ZW49 1069 aaPredicted RBP11.39□□□□□ -0.59
CCDC60-204ENST00000539847 ARHGEF12Q9NZN5 1544 aa11.39□□□□□ -0.59
CCDC60-204ENST00000539847 HECW1Q76N89 1606 aa11.38□□□□□ -0.59
CCDC60-204ENST00000539847 HSPA2P54652 639 aa11.37□□□□□ -0.59
CCDC60-204ENST00000539847 CERKQ8TCT0 537 aa11.37□□□□□ -0.59
CCDC60-204ENST00000539847 ZNF518AQ6AHZ1 1483 aa11.37□□□□□ -0.59
CCDC60-204ENST00000539847 CDK13Q14004 1512 aaKnown RBP11.35□□□□□ -0.59
CCDC60-204ENST00000539847 CFAP44Q96MT7 982 aa11.35□□□□□ -0.59
CCDC60-204ENST00000539847 CIZ1Q9ULV3 898 aaPredicted RBP11.35□□□□□ -0.59
CCDC60-204ENST00000539847 REREQ9P2R6 1566 aa11.34□□□□□ -0.59
CCDC60-204ENST00000539847 RANGAP1P46060 587 aaPredicted RBP11.34□□□□□ -0.59
CCDC60-204ENST00000539847 GTF3C3Q9Y5Q9 886 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms