RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 FAM9BQ8IZU0 186 aa24■■□□□ 1.43
RAB40C-205ENST00000539661 SMG6Q86US8 1419 aaKnown RBP23.98■■□□□ 1.43
RAB40C-205ENST00000539661 C11orf95C9JLR9 678 aaPredicted RBP23.96■■□□□ 1.43
RAB40C-205ENST00000539661 L3MBTL2Q969R5 705 aa23.96■■□□□ 1.43
RAB40C-205ENST00000539661 RRP7BPQ9NSQ0 103 aa23.95■■□□□ 1.42
RAB40C-205ENST00000539661 MPHOSPH9Q99550 1183 aa23.95■■□□□ 1.42
RAB40C-205ENST00000539661 KDM6BO15054 1643 aa23.94■■□□□ 1.42
RAB40C-205ENST00000539661 MIA2Q96PC5 1412 aa23.94■■□□□ 1.42
RAB40C-205ENST00000539661 ZNF608Q9ULD9 1512 aaPredicted RBP23.93■■□□□ 1.42
RAB40C-205ENST00000539661 MAGI3Q5TCQ9 1506 aa23.93■■□□□ 1.42
RAB40C-205ENST00000539661 SPATA31E1Q6ZUB1 1445 aa23.93■■□□□ 1.42
RAB40C-205ENST00000539661 RPRD2Q5VT52 1461 aaKnown RBP23.93■■□□□ 1.42
RAB40C-205ENST00000539661 RNF123Q5XPI4 1314 aa23.92■■□□□ 1.42
RAB40C-205ENST00000539661 TARBP1Q13395 1621 aaKnown RBP23.9■■□□□ 1.42
RAB40C-205ENST00000539661 TEX14Q8IWB6 1497 aa23.89■■□□□ 1.42
RAB40C-205ENST00000539661 KIF7Q2M1P5 1343 aa23.88■■□□□ 1.41
RAB40C-205ENST00000539661 ANKRD30BQ9BXX2 1392 aa23.88■■□□□ 1.41
RAB40C-205ENST00000539661 CHIC2Q9UKJ5 165 aa23.86■■□□□ 1.41
RAB40C-205ENST00000539661 NUDCQ9Y266 331 aa23.85■■□□□ 1.41
RAB40C-205ENST00000539661 MRC2Q9UBG0 1479 aa23.85■■□□□ 1.41
RAB40C-205ENST00000539661 ROCK1Q13464 1354 aa23.84■■□□□ 1.41
RAB40C-205ENST00000539661 ANP32AP39687 249 aaKnown RBP23.83■■□□□ 1.41
RAB40C-205ENST00000539661 IPO9Q96P70 1041 aaKnown RBP23.82■■□□□ 1.4
RAB40C-205ENST00000539661 NBPF8Q3BBV2 869 aa23.82■■□□□ 1.4
RAB40C-205ENST00000539661 PAK3O75914 559 aaPredicted RBP23.81■■□□□ 1.4
RAB40C-205ENST00000539661 CCDC136Q96JN2 1154 aa23.79■■□□□ 1.4
RAB40C-205ENST00000539661 FBLN2P98095 1184 aa23.79■■□□□ 1.4
RAB40C-205ENST00000539661 EPRSP07814 1512 aaKnown RBP23.78■■□□□ 1.4
RAB40C-205ENST00000539661 DHX29Q7Z478 1369 aaKnown RBP23.78■■□□□ 1.4
RAB40C-205ENST00000539661 NBR1Q14596 966 aa23.76■■□□□ 1.39
RAB40C-205ENST00000539661 ARID4BQ4LE39 1312 aaPredicted RBP23.75■■□□□ 1.39
RAB40C-205ENST00000539661 ERCC6Q03468 1493 aa23.73■■□□□ 1.39
RAB40C-205ENST00000539661 ZBTB47Q9UFB7 747 aaPredicted RBP23.73■■□□□ 1.39
RAB40C-205ENST00000539661 DAPK1P53355 1430 aa23.72■■□□□ 1.39
RAB40C-205ENST00000539661 DNMT1P26358 1616 aaKnown RBP23.72■■□□□ 1.39
RAB40C-205ENST00000539661 FOXD1Q16676 465 aa23.72■■□□□ 1.39
RAB40C-205ENST00000539661 RTL5Q5HYW3 569 aaPredicted RBP23.72■■□□□ 1.39
RAB40C-205ENST00000539661 PBRM1Q86U86 1689 aa23.71■■□□□ 1.39
RAB40C-205ENST00000539661 MBD5Q9P267 1494 aa23.7■■□□□ 1.38
RAB40C-205ENST00000539661 WDR62O43379 1518 aa23.68■■□□□ 1.38
RAB40C-205ENST00000539661 ROCK2O75116 1388 aaKnown RBP23.65■■□□□ 1.38
RAB40C-205ENST00000539661 BCORL1Q5H9F3 1711 aa23.65■■□□□ 1.38
RAB40C-205ENST00000539661 IFT140Q96RY7 1462 aa23.65■■□□□ 1.38
RAB40C-205ENST00000539661 ABCC5O15440 1437 aa23.65■■□□□ 1.38
RAB40C-205ENST00000539661 KIF14Q15058 1648 aa23.64■■□□□ 1.38
RAB40C-205ENST00000539661 CDK13Q14004 1512 aaKnown RBP23.64■■□□□ 1.38
RAB40C-205ENST00000539661 SLC4A1APQ9BWU0 796 aaKnown RBP23.64■■□□□ 1.37
RAB40C-205ENST00000539661 IQGAP2Q13576 1575 aa23.63■■□□□ 1.37
RAB40C-205ENST00000539661 PNISRQ8TF01 805 aaKnown RBP23.63■■□□□ 1.37
RAB40C-205ENST00000539661 USP47Q96K76 1375 aa23.62■■□□□ 1.37
RAB40C-205ENST00000539661 KDM5CP41229 1560 aa23.62■■□□□ 1.37
RAB40C-205ENST00000539661 ADAMTS12P58397 1594 aa23.6■■□□□ 1.37
RAB40C-205ENST00000539661 PZPP20742 1482 aa23.6■■□□□ 1.37
RAB40C-205ENST00000539661 KTN1Q86UP2 1357 aaKnown RBP23.59■■□□□ 1.37
RAB40C-205ENST00000539661 LRPPRCP42704 1394 aaKnown RBP23.58■■□□□ 1.37
RAB40C-205ENST00000539661 TCERG1O14776 1098 aaKnown RBP23.58■■□□□ 1.36
RAB40C-205ENST00000539661 CHMP7Q8WUX9 453 aaPredicted RBP23.55■■□□□ 1.36
RAB40C-205ENST00000539661 USP35Q9P2H5 1018 aa23.55■■□□□ 1.36
RAB40C-205ENST00000539661 TMC1Q8TDI8 760 aa23.55■■□□□ 1.36
RAB40C-205ENST00000539661 KIAA1107Q9UPP5 1409 aa23.54■■□□□ 1.36
RAB40C-205ENST00000539661 BRD4O60885 1362 aaPredicted RBP23.54■■□□□ 1.36
RAB40C-205ENST00000539661 KIF15Q9NS87 1388 aa23.54■■□□□ 1.36
RAB40C-205ENST00000539661 EIF4G3O43432 1585 aaKnown RBP23.53■■□□□ 1.36
RAB40C-205ENST00000539661 UHRF1BP1Q6BDS2 1440 aa23.53■■□□□ 1.36
RAB40C-205ENST00000539661 ADGBQ8N7X0 1667 aa23.53■■□□□ 1.36
RAB40C-205ENST00000539661 RRP1P56182 461 aaKnown RBP23.51■■□□□ 1.35
RAB40C-205ENST00000539661 MS4A1P11836 297 aa23.51■■□□□ 1.35
RAB40C-205ENST00000539661 RALGAPBQ86X10 1494 aa23.51■■□□□ 1.35
RAB40C-205ENST00000539661 RALBP1Q15311 655 aa23.47■■□□□ 1.35
RAB40C-205ENST00000539661 MYBBP1AQ9BQG0 1328 aaKnown RBP23.47■■□□□ 1.35
RAB40C-205ENST00000539661 ADGRL2O95490 1459 aa23.46■■□□□ 1.35
RAB40C-205ENST00000539661 ZNF644Q9H582 1327 aaPredicted RBP23.46■■□□□ 1.35
RAB40C-205ENST00000539661 ARHGEF12Q9NZN5 1544 aa23.45■■□□□ 1.34
RAB40C-205ENST00000539661 PDE3BQ13370 1112 aa23.45■■□□□ 1.34
RAB40C-205ENST00000539661 POLR3GLQ9BT43 218 aa23.44■■□□□ 1.34
RAB40C-205ENST00000539661 E9PCH4 1651 aa23.44■■□□□ 1.34
RAB40C-205ENST00000539661 PDE4AP27815 886 aa23.44■■□□□ 1.34
RAB40C-205ENST00000539661 GRIN2AQ12879 1464 aa23.43■■□□□ 1.34
RAB40C-205ENST00000539661 BACH2Q9BYV9 841 aa23.43■■□□□ 1.34
RAB40C-205ENST00000539661 PPM1GO15355 546 aaPredicted RBP23.43■■□□□ 1.34
RAB40C-205ENST00000539661 ITSN2Q9NZM3 1697 aa23.43■■□□□ 1.34
RAB40C-205ENST00000539661 DISP1Q96F81 1524 aa23.42■■□□□ 1.34
RAB40C-205ENST00000539661 RCAN3Q9UKA8 241 aa23.42■■□□□ 1.34
RAB40C-205ENST00000539661 EXOC6Q8TAG9 804 aa23.41■■□□□ 1.34
RAB40C-205ENST00000539661 CROCC2H7BZ55 1655 aa23.41■■□□□ 1.34
RAB40C-205ENST00000539661 CAMSAP2Q08AD1 1489 aa23.41■■□□□ 1.34
RAB40C-205ENST00000539661 PRKCSHP14314 528 aaPredicted RBP23.39■■□□□ 1.33
RAB40C-205ENST00000539661 CNGB1Q14028 1251 aaPredicted RBP23.39■■□□□ 1.33
RAB40C-205ENST00000539661 NUP153P49790 1475 aaKnown RBP23.39■■□□□ 1.33
RAB40C-205ENST00000539661 RAPGEF6Q8TEU7 1601 aa23.38■■□□□ 1.33
RAB40C-205ENST00000539661 NEFMP07197 916 aa23.37■■□□□ 1.33
RAB40C-205ENST00000539661 ZNF326Q5BKZ1 582 aaKnown RBP23.37■■□□□ 1.33
RAB40C-205ENST00000539661 KIAA0556O60303 1618 aa23.37■■□□□ 1.33
RAB40C-205ENST00000539661 WASHC2CQ9Y4E1 1318 aa23.36■■□□□ 1.33
RAB40C-205ENST00000539661 PKD2Q13563 968 aa23.36■■□□□ 1.33
RAB40C-205ENST00000539661 NPM2Q86SE8 214 aaKnown RBP23.36■■□□□ 1.33
RAB40C-205ENST00000539661 KIAA0586Q9BVV6 1533 aa23.35■■□□□ 1.33
RAB40C-205ENST00000539661 INSRP06213 1382 aa23.35■■□□□ 1.33
RAB40C-205ENST00000539661 PLB1Q6P1J6 1458 aa23.35■■□□□ 1.33
RAB40C-205ENST00000539661 CARD11Q9BXL7 1154 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms