RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 ATF5Q9Y2D1 282 aaPredicted RBP15.84■□□□□ 0.13
CLIP1-210ENST00000538120 NUP153P49790 1475 aaKnown RBP15.83■□□□□ 0.13
CLIP1-210ENST00000538120 ATXN8OSP0DMR3 200 aa15.83■□□□□ 0.12
CLIP1-210ENST00000538120 ARID3CA6NKF2 412 aa15.82■□□□□ 0.12
CLIP1-210ENST00000538120 RAPGEF6Q8TEU7 1601 aa15.81■□□□□ 0.12
CLIP1-210ENST00000538120 GTF3C3Q9Y5Q9 886 aa15.81■□□□□ 0.12
CLIP1-210ENST00000538120 PTPRKQ15262 1439 aa15.81■□□□□ 0.12
CLIP1-210ENST00000538120 CARMIL2Q6F5E8 1435 aa15.79■□□□□ 0.12
CLIP1-210ENST00000538120 PLB1Q6P1J6 1458 aa15.78■□□□□ 0.12
CLIP1-210ENST00000538120 SPINK5Q9NQ38 1064 aaPredicted RBP15.77■□□□□ 0.12
CLIP1-210ENST00000538120 TCOF1Q13428 1488 aaKnown RBP15.77■□□□□ 0.11
CLIP1-210ENST00000538120 PTPN23Q9H3S7 1636 aa15.76■□□□□ 0.11
CLIP1-210ENST00000538120 MAPKBP1O60336 1514 aa15.76■□□□□ 0.11
CLIP1-210ENST00000538120 ZNF316A6NFI3 1004 aaPredicted RBP15.73■□□□□ 0.11
CLIP1-210ENST00000538120 CENPBP07199 599 aaPredicted RBP15.73■□□□□ 0.11
CLIP1-210ENST00000538120 MIA2Q96PC5 1412 aa15.73■□□□□ 0.11
CLIP1-210ENST00000538120 CHD1O14646 1710 aa15.72■□□□□ 0.11
CLIP1-210ENST00000538120 HFM1A2PYH4 1435 aa15.71■□□□□ 0.11
CLIP1-210ENST00000538120 ABCA8O94911 1581 aa15.71■□□□□ 0.1
CLIP1-210ENST00000538120 PRG4Q92954 1404 aaPredicted RBP15.7■□□□□ 0.1
CLIP1-210ENST00000538120 CDK11AQ9UQ88 783 aaPredicted RBP15.69■□□□□ 0.1
CLIP1-210ENST00000538120 NAIPQ13075 1403 aa15.69■□□□□ 0.1
CLIP1-210ENST00000538120 TROQ12816 1431 aaPredicted RBP15.69■□□□□ 0.1
CLIP1-210ENST00000538120 SHROOM2Q13796 1616 aa15.65■□□□□ 0.1
CLIP1-210ENST00000538120 ATP10BO94823 1461 aa15.64■□□□□ 0.09
CLIP1-210ENST00000538120 PTPRGP23470 1445 aa15.64■□□□□ 0.09
CLIP1-210ENST00000538120 YTHDC1Q96MU7 727 aaKnown RBP15.62■□□□□ 0.09
CLIP1-210ENST00000538120 ADCY10Q96PN6 1610 aa15.62■□□□□ 0.09
CLIP1-210ENST00000538120 ZNF644Q9H582 1327 aaPredicted RBP15.62■□□□□ 0.09
CLIP1-210ENST00000538120 CAPN15O75808 1086 aa15.62■□□□□ 0.09
CLIP1-210ENST00000538120 CHIC2Q9UKJ5 165 aa15.62■□□□□ 0.09
CLIP1-210ENST00000538120 KIF14Q15058 1648 aa15.61■□□□□ 0.09
CLIP1-210ENST00000538120 SIN3AQ96ST3 1273 aa15.61■□□□□ 0.09
CLIP1-210ENST00000538120 RRP7BPQ9NSQ0 103 aa15.61■□□□□ 0.09
CLIP1-210ENST00000538120 AKNAQ7Z591 1439 aa15.61■□□□□ 0.09
CLIP1-210ENST00000538120 UACAQ9BZF9 1416 aa15.61■□□□□ 0.09
CLIP1-210ENST00000538120 GPATCH8Q9UKJ3 1502 aaKnown RBP15.6■□□□□ 0.09
CLIP1-210ENST00000538120 CACNB1Q02641 598 aaPredicted RBP15.6■□□□□ 0.09
CLIP1-210ENST00000538120 ERICH6Q7L0X2 663 aa15.59■□□□□ 0.09
CLIP1-210ENST00000538120 ABCC5O15440 1437 aa15.59■□□□□ 0.09
CLIP1-210ENST00000538120 DAPK1P53355 1430 aa15.59■□□□□ 0.09
CLIP1-210ENST00000538120 ERCC6L2Q5T890 1561 aa15.58■□□□□ 0.09
CLIP1-210ENST00000538120 PLEKHD1A6NEE1 506 aa15.58■□□□□ 0.08
CLIP1-210ENST00000538120 TRHP20396 242 aaPredicted RBP15.58■□□□□ 0.08
CLIP1-210ENST00000538120 AMER1Q5JTC6 1135 aaPredicted RBP15.58■□□□□ 0.08
CLIP1-210ENST00000538120 GCC2Q8IWJ2 1684 aa15.57■□□□□ 0.08
CLIP1-210ENST00000538120 DNMT1P26358 1616 aaKnown RBP15.57■□□□□ 0.08
CLIP1-210ENST00000538120 CLASP1Q7Z460 1538 aa15.57■□□□□ 0.08
CLIP1-210ENST00000538120 ABCC10Q5T3U5 1492 aa15.56■□□□□ 0.08
CLIP1-210ENST00000538120 KDM6BO15054 1643 aa15.56■□□□□ 0.08
CLIP1-210ENST00000538120 MIER1Q8N108 512 aa15.55■□□□□ 0.08
CLIP1-210ENST00000538120 CFDP1Q9UEE9 299 aaPredicted RBP15.55■□□□□ 0.08
CLIP1-210ENST00000538120 ROCK1Q13464 1354 aa15.55■□□□□ 0.08
CLIP1-210ENST00000538120 ZNF219Q9P2Y4 722 aaPredicted RBP15.55■□□□□ 0.08
CLIP1-210ENST00000538120 CAMSAP2Q08AD1 1489 aa15.55■□□□□ 0.08
CLIP1-210ENST00000538120 ITSN2Q9NZM3 1697 aa15.54■□□□□ 0.08
CLIP1-210ENST00000538120 TIMELESSQ9UNS1 1208 aa15.52■□□□□ 0.07
CLIP1-210ENST00000538120 DENND4BO75064 1496 aaPredicted RBP15.51■□□□□ 0.07
CLIP1-210ENST00000538120 CDC42BPAQ5VT25 1732 aa15.49■□□□□ 0.07
CLIP1-210ENST00000538120 ZNF777Q9ULD5 760 aaPredicted RBP15.49■□□□□ 0.07
CLIP1-210ENST00000538120 ABCC2Q92887 1545 aa15.48■□□□□ 0.07
CLIP1-210ENST00000538120 PPP1R15AO75807 674 aaPredicted RBP15.46■□□□□ 0.07
CLIP1-210ENST00000538120 TRIM52Q96A61 297 aa15.45■□□□□ 0.06
CLIP1-210ENST00000538120 NCOA1Q15788 1441 aa15.45■□□□□ 0.06
CLIP1-210ENST00000538120 ADGRL2O95490 1459 aa15.44■□□□□ 0.06
CLIP1-210ENST00000538120 MPHOSPH9Q99550 1183 aa15.44■□□□□ 0.06
CLIP1-210ENST00000538120 CROCC2H7BZ55 1655 aa15.43■□□□□ 0.06
CLIP1-210ENST00000538120 UHRF1BP1LA0JNW5 1464 aa15.42■□□□□ 0.06
CLIP1-210ENST00000538120 ADGBQ8N7X0 1667 aa15.41■□□□□ 0.06
CLIP1-210ENST00000538120 TONSLQ96HA7 1378 aa15.4■□□□□ 0.06
CLIP1-210ENST00000538120 MBD5Q9P267 1494 aa15.39■□□□□ 0.05
CLIP1-210ENST00000538120 KDM5BQ9UGL1 1544 aa15.39■□□□□ 0.05
CLIP1-210ENST00000538120 DSG3P32926 999 aa15.39■□□□□ 0.05
CLIP1-210ENST00000538120 SHANK2Q9UPX8 1470 aa15.39■□□□□ 0.05
CLIP1-210ENST00000538120 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.38■□□□□ 0.05
CLIP1-210ENST00000538120 PREX2Q70Z35 1606 aa15.38■□□□□ 0.05
CLIP1-210ENST00000538120 CDC42BPBQ9Y5S2 1711 aa15.38■□□□□ 0.05
CLIP1-210ENST00000538120 ABCB7O75027 752 aa15.38■□□□□ 0.05
CLIP1-210ENST00000538120 ANKRD30AQ9BXX3 1397 aa15.38■□□□□ 0.05
CLIP1-210ENST00000538120 TTC37Q6PGP7 1564 aa15.38■□□□□ 0.05
CLIP1-210ENST00000538120 HNRNPMP52272 730 aaKnown RBP eCLIP15.37■□□□□ 0.05
CLIP1-210ENST00000538120 SAMD9LQ8IVG5 1584 aa15.37■□□□□ 0.05
CLIP1-210ENST00000538120 ARHGEF5Q12774 1597 aa15.37■□□□□ 0.05
CLIP1-210ENST00000538120 C9orf84Q5VXU9 1444 aa15.37■□□□□ 0.05
CLIP1-210ENST00000538120 ZCCHC11Q5TAX3 1644 aaKnown RBP15.36■□□□□ 0.05
CLIP1-210ENST00000538120 POLA2Q14181 598 aa15.36■□□□□ 0.05
CLIP1-210ENST00000538120 ARXQ96QS3 562 aa15.36■□□□□ 0.05
CLIP1-210ENST00000538120 PZPP20742 1482 aa15.36■□□□□ 0.05
CLIP1-210ENST00000538120 ANKRD30BQ9BXX2 1392 aa15.35■□□□□ 0.05
CLIP1-210ENST00000538120 ANKRD50Q9ULJ7 1429 aa15.33■□□□□ 0.04
CLIP1-210ENST00000538120 KCNH8Q96L42 1107 aa15.33■□□□□ 0.04
CLIP1-210ENST00000538120 TSPY4P0CV99 314 aa15.32■□□□□ 0.04
CLIP1-210ENST00000538120 TSPY10P0CW01 314 aa15.32■□□□□ 0.04
CLIP1-210ENST00000538120 CCDC141Q6ZP82 1450 aa15.31■□□□□ 0.04
CLIP1-210ENST00000538120 ARHGAP5Q13017 1502 aa15.31■□□□□ 0.04
CLIP1-210ENST00000538120 RSPH4AQ5TD94 716 aa15.3■□□□□ 0.04
CLIP1-210ENST00000538120 SYCP2Q9BX26 1530 aa15.29■□□□□ 0.04
CLIP1-210ENST00000538120 PLCH2O75038 1416 aa15.28■□□□□ 0.04
CLIP1-210ENST00000538120 KIF15Q9NS87 1388 aa15.28■□□□□ 0.04
CLIP1-210ENST00000538120 RPRD2Q5VT52 1461 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms