RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	CDK11A	Q9UQ88	783 aa	Predicted RBP	19.11	■□□□□ 0.65
CTNND1-238	ENST00000534647	SCAPER	Q9BY12	1400 aa		19.09	■□□□□ 0.65
CTNND1-238	ENST00000534647	EFCAB2	Q5VUJ9	269 aa		19.09	■□□□□ 0.65
CTNND1-238	ENST00000534647	PCF11	O94913	1555 aa	Known RBP	19.09	■□□□□ 0.65
CTNND1-238	ENST00000534647	ZFYVE16	Q7Z3T8	1539 aa		19.09	■□□□□ 0.65
CTNND1-238	ENST00000534647	LMTK3	Q96Q04	1460 aa		19.09	■□□□□ 0.65
CTNND1-238	ENST00000534647	ARHGAP35	Q9NRY4	1499 aa		19.09	■□□□□ 0.65
CTNND1-238	ENST00000534647	YEATS2	Q9ULM3	1422 aa		19.08	■□□□□ 0.65
CTNND1-238	ENST00000534647	FBXO41	Q8TF61	875 aa		19.08	■□□□□ 0.64
CTNND1-238	ENST00000534647	HECW1	Q76N89	1606 aa		19.06	■□□□□ 0.64
CTNND1-238	ENST00000534647	ATP1B4	Q9UN42	357 aa	Predicted RBP	19.04	■□□□□ 0.64
CTNND1-238	ENST00000534647	ATP10A	O60312	1499 aa		19.03	■□□□□ 0.64
CTNND1-238	ENST00000534647	RIMS1	Q86UR5	1692 aa	Known RBP	19.02	■□□□□ 0.64
CTNND1-238	ENST00000534647	TRO	Q12816	1431 aa	Predicted RBP	19.02	■□□□□ 0.64
CTNND1-238	ENST00000534647	SIGLEC1	Q9BZZ2	1709 aa		19	■□□□□ 0.63
CTNND1-238	ENST00000534647	CLIP1	P30622	1438 aa		18.98	■□□□□ 0.63
CTNND1-238	ENST00000534647	C9orf84	Q5VXU9	1444 aa		18.98	■□□□□ 0.63
CTNND1-238	ENST00000534647	ZNF518A	Q6AHZ1	1483 aa		18.97	■□□□□ 0.63
CTNND1-238	ENST00000534647	MYO5C	Q9NQX4	1742 aa		18.97	■□□□□ 0.63
CTNND1-238	ENST00000534647	KIF14	Q15058	1648 aa		18.96	■□□□□ 0.63
CTNND1-238	ENST00000534647	ARHGEF12	Q9NZN5	1544 aa		18.96	■□□□□ 0.63
CTNND1-238	ENST00000534647	MLEC	Q14165	292 aa		18.96	■□□□□ 0.63
CTNND1-238	ENST00000534647	HSPA2	P54652	639 aa		18.95	■□□□□ 0.62
CTNND1-238	ENST00000534647	AFAP1	Q8N556	730 aa		18.95	■□□□□ 0.62
CTNND1-238	ENST00000534647	KDM5C	P41229	1560 aa		18.93	■□□□□ 0.62
CTNND1-238	ENST00000534647	CASKIN1	Q8WXD9	1431 aa		18.92	■□□□□ 0.62
CTNND1-238	ENST00000534647	ARHGAP5	Q13017	1502 aa		18.92	■□□□□ 0.62
CTNND1-238	ENST00000534647	MLH3	Q9UHC1	1453 aa		18.9	■□□□□ 0.62
CTNND1-238	ENST00000534647	PPP6R1	Q9UPN7	881 aa		18.9	■□□□□ 0.62
CTNND1-238	ENST00000534647	FER1L4	A9Z1Z3	1794 aa		18.9	■□□□□ 0.62
CTNND1-238	ENST00000534647	CCDC18	Q5T9S5	1454 aa		18.9	■□□□□ 0.62
CTNND1-238	ENST00000534647	RERE	Q9P2R6	1566 aa		18.89	■□□□□ 0.61
CTNND1-238	ENST00000534647	LRRIQ1	Q96JM4	1722 aa		18.88	■□□□□ 0.61
CTNND1-238	ENST00000534647	CEBPA	P49715	358 aa	Predicted RBP	18.85	■□□□□ 0.61
CTNND1-238	ENST00000534647	CDC42BPB	Q9Y5S2	1711 aa		18.85	■□□□□ 0.61
CTNND1-238	ENST00000534647	DIP2C	Q9Y2E4	1556 aa		18.84	■□□□□ 0.61
CTNND1-238	ENST00000534647	AGL	P35573	1532 aa		18.84	■□□□□ 0.61
CTNND1-238	ENST00000534647	TRAPPC8	Q9Y2L5	1435 aa		18.83	■□□□□ 0.61
CTNND1-238	ENST00000534647	CERK	Q8TCT0	537 aa		18.83	■□□□□ 0.6
CTNND1-238	ENST00000534647	PREX2	Q70Z35	1606 aa		18.82	■□□□□ 0.6
CTNND1-238	ENST00000534647	MYT1L	Q9UL68	1186 aa		18.82	■□□□□ 0.6
CTNND1-238	ENST00000534647	DMRT2	Q9Y5R5	561 aa		18.82	■□□□□ 0.6
CTNND1-238	ENST00000534647	ABCC1	P33527	1531 aa		18.81	■□□□□ 0.6
CTNND1-238	ENST00000534647	FYCO1	Q9BQS8	1478 aa		18.81	■□□□□ 0.6
CTNND1-238	ENST00000534647	PREX1	Q8TCU6	1659 aa		18.81	■□□□□ 0.6
CTNND1-238	ENST00000534647	SETD1B	Q9UPS6	1966 aa	Known RBP	18.79	■□□□□ 0.6
CTNND1-238	ENST00000534647	UHRF1BP1	Q6BDS2	1440 aa		18.78	■□□□□ 0.6
CTNND1-238	ENST00000534647	ABCA6	Q8N139	1617 aa		18.78	■□□□□ 0.6
CTNND1-238	ENST00000534647	ESF1	Q9H501	851 aa	Known RBP	18.75	■□□□□ 0.59
CTNND1-238	ENST00000534647	ITSN2	Q9NZM3	1697 aa		18.75	■□□□□ 0.59
CTNND1-238	ENST00000534647	CNTLN	Q9NXG0	1405 aa		18.74	■□□□□ 0.59
CTNND1-238	ENST00000534647	GPATCH8	Q9UKJ3	1502 aa	Known RBP	18.74	■□□□□ 0.59
CTNND1-238	ENST00000534647	CDC42BPA	Q5VT25	1732 aa		18.74	■□□□□ 0.59
CTNND1-238	ENST00000534647	KIAA1107	Q9UPP5	1409 aa		18.74	■□□□□ 0.59
CTNND1-238	ENST00000534647	KIDINS220	Q9ULH0	1771 aa		18.73	■□□□□ 0.59
CTNND1-238	ENST00000534647	SAMD9L	Q8IVG5	1584 aa		18.72	■□□□□ 0.59
CTNND1-238	ENST00000534647	PTPRT	O14522	1441 aa		18.71	■□□□□ 0.59
CTNND1-238	ENST00000534647	STRC	Q7RTU9	1775 aa		18.7	■□□□□ 0.58
CTNND1-238	ENST00000534647	ZNF777	Q9ULD5	760 aa	Predicted RBP	18.7	■□□□□ 0.58
CTNND1-238	ENST00000534647	SPAG9	O60271	1321 aa	Known RBP	18.7	■□□□□ 0.58
CTNND1-238	ENST00000534647	C3	P01024	1663 aa		18.69	■□□□□ 0.58
CTNND1-238	ENST00000534647	HNRNPM	P52272	730 aa	Known RBP eCLIP	18.69	■□□□□ 0.58	1e-6	■■■■□ 21.9
CTNND1-238	ENST00000534647	CFDP1	Q9UEE9	299 aa	Predicted RBP	18.69	■□□□□ 0.58
CTNND1-238	ENST00000534647	PLEKHH2	Q8IVE3	1493 aa		18.69	■□□□□ 0.58
CTNND1-238	ENST00000534647	NPAT	Q14207	1427 aa		18.68	■□□□□ 0.58
CTNND1-238	ENST00000534647	SYCP2	Q9BX26	1530 aa		18.66	■□□□□ 0.58
CTNND1-238	ENST00000534647	ZMYM3	Q14202	1370 aa		18.66	■□□□□ 0.58
CTNND1-238	ENST00000534647	CCNB3	Q8WWL7	1395 aa		18.66	■□□□□ 0.58
CTNND1-238	ENST00000534647	RTN4	Q9NQC3	1192 aa	Known RBP	18.65	■□□□□ 0.58
CTNND1-238	ENST00000534647	AMER1	Q5JTC6	1135 aa	Predicted RBP	18.63	■□□□□ 0.57
CTNND1-238	ENST00000534647	MTUS2	Q5JR59	1369 aa		18.63	■□□□□ 0.57
CTNND1-238	ENST00000534647	MROH2A	A6NES4	1674 aa		18.63	■□□□□ 0.57
CTNND1-238	ENST00000534647	NCOA1	Q15788	1441 aa		18.62	■□□□□ 0.57
CTNND1-238	ENST00000534647	ATP7A	Q04656	1500 aa		18.62	■□□□□ 0.57
CTNND1-238	ENST00000534647	A2M	P01023	1474 aa		18.61	■□□□□ 0.57
CTNND1-238	ENST00000534647	PLXNC1	O60486	1568 aa		18.6	■□□□□ 0.57
CTNND1-238	ENST00000534647	INO80	Q9ULG1	1556 aa	Predicted RBP	18.6	■□□□□ 0.57
CTNND1-238	ENST00000534647	MBD5	Q9P267	1494 aa		18.58	■□□□□ 0.56
CTNND1-238	ENST00000534647	RTEL1-TNFRSF6B	F6WH68	1400 aa		18.57	■□□□□ 0.56
CTNND1-238	ENST00000534647	IQSEC2	Q5JU85	1478 aa		18.56	■□□□□ 0.56
CTNND1-238	ENST00000534647	CEP162	Q5TB80	1403 aa		18.56	■□□□□ 0.56
CTNND1-238	ENST00000534647	LTBP4	Q8N2S1	1624 aa		18.56	■□□□□ 0.56
CTNND1-238	ENST00000534647	ZNF644	Q9H582	1327 aa	Predicted RBP	18.55	■□□□□ 0.56
CTNND1-238	ENST00000534647	SUPT6H	Q7KZ85	1726 aa	Known RBP	18.55	■□□□□ 0.56
CTNND1-238	ENST00000534647	PTPRK	Q15262	1439 aa		18.55	■□□□□ 0.56
CTNND1-238	ENST00000534647	GGT6	Q6P531	493 aa		18.54	■□□□□ 0.56
CTNND1-238	ENST00000534647	PPP4R3CP	Q6ZMV5	832 aa		18.54	■□□□□ 0.56
CTNND1-238	ENST00000534647	EHBP1L1	Q8N3D4	1523 aa		18.54	■□□□□ 0.56
CTNND1-238	ENST00000534647	CAMSAP1	Q5T5Y3	1602 aa		18.53	■□□□□ 0.56
CTNND1-238	ENST00000534647	TIAM1	Q13009	1591 aa		18.53	■□□□□ 0.56
CTNND1-238	ENST00000534647	PKD2	Q13563	968 aa		18.53	■□□□□ 0.56
CTNND1-238	ENST00000534647	RSPH4A	Q5TD94	716 aa		18.53	■□□□□ 0.56
CTNND1-238	ENST00000534647	DHX29	Q7Z478	1369 aa	Known RBP	18.52	■□□□□ 0.55
CTNND1-238	ENST00000534647	PLA2R1	Q13018	1463 aa		18.52	■□□□□ 0.55
CTNND1-238	ENST00000534647	ADGB	Q8N7X0	1667 aa		18.5	■□□□□ 0.55
CTNND1-238	ENST00000534647	CLTC	Q00610	1675 aa	Known RBP	18.5	■□□□□ 0.55
CTNND1-238	ENST00000534647	NCKAP5L	Q9HCH0	1330 aa		18.49	■□□□□ 0.55
CTNND1-238	ENST00000534647	ZNF142	P52746	1687 aa	Predicted RBP	18.47	■□□□□ 0.55
CTNND1-238	ENST00000534647	TCOF1	Q13428	1488 aa	Known RBP	18.47	■□□□□ 0.55
CTNND1-238	ENST00000534647	NCBP3	Q53F19	620 aa	Known RBP	18.46	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms