RNA–Protein interactions for RNA: ENST00000533667.5

CTNND1-236, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 4,990 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-236ENST00000533667 ERCC6Q03468 1493 aa8.92□□□□□ -0.98
CTNND1-236ENST00000533667 CECR2Q9BXF3 1484 aa8.92□□□□□ -0.98
CTNND1-236ENST00000533667 FGD1P98174 961 aa8.92□□□□□ -0.98
CTNND1-236ENST00000533667 CHAF1AQ13111 956 aaPredicted RBP8.92□□□□□ -0.98
CTNND1-236ENST00000533667 KCNJ4P48050 445 aa8.91□□□□□ -0.98
CTNND1-236ENST00000533667 RBM19Q9Y4C8 960 aaKnown RBP8.91□□□□□ -0.98
CTNND1-236ENST00000533667 CARMIL2Q6F5E8 1435 aa8.91□□□□□ -0.98
CTNND1-236ENST00000533667 GOLGA6L4A6NEF3 574 aa8.91□□□□□ -0.98
CTNND1-236ENST00000533667 VSIG10Q8N0Z9 540 aa8.91□□□□□ -0.98
CTNND1-236ENST00000533667 CHMP4AQ9BY43 222 aa8.9□□□□□ -0.98
CTNND1-236ENST00000533667 RTN4Q9NQC3 1192 aaKnown RBP8.9□□□□□ -0.98
CTNND1-236ENST00000533667 SMARCA2P51531 1590 aa8.9□□□□□ -0.99
CTNND1-236ENST00000533667 SENP3-EIF4A1A0A087X0R7 540 aa8.9□□□□□ -0.99
CTNND1-236ENST00000533667 MSNP26038 577 aaKnown RBP8.89□□□□□ -0.99
CTNND1-236ENST00000533667 RWDD1Q9H446 243 aaPredicted RBP8.89□□□□□ -0.99
CTNND1-236ENST00000533667 ROCK2O75116 1388 aaKnown RBP8.89□□□□□ -0.99
CTNND1-236ENST00000533667 RAB3GAP2Q9H2M9 1393 aa8.89□□□□□ -0.99
CTNND1-236ENST00000533667 PKD2Q13563 968 aa8.89□□□□□ -0.99
CTNND1-236ENST00000533667 RCAN3Q9UKA8 241 aa8.89□□□□□ -0.99
CTNND1-236ENST00000533667 EIF3AQ14152 1382 aaKnown RBP8.89□□□□□ -0.99
CTNND1-236ENST00000533667 GBP4Q96PP9 640 aa8.89□□□□□ -0.99
CTNND1-236ENST00000533667 ANKRD30AQ9BXX3 1397 aa8.89□□□□□ -0.99
CTNND1-236ENST00000533667 PLCB2Q00722 1185 aa8.89□□□□□ -0.99
CTNND1-236ENST00000533667 CCDC88BA6NC98 1476 aa8.88□□□□□ -0.99
CTNND1-236ENST00000533667 PDE3BQ13370 1112 aa8.88□□□□□ -0.99
CTNND1-236ENST00000533667 HDGFL2Q7Z4V5 671 aaPredicted RBP8.88□□□□□ -0.99
CTNND1-236ENST00000533667 SRPK2P78362 688 aaKnown RBP8.88□□□□□ -0.99
CTNND1-236ENST00000533667 SENP3Q9H4L4 574 aaPredicted RBP8.88□□□□□ -0.99
CTNND1-236ENST00000533667 MPHOSPH9Q99550 1183 aa8.87□□□□□ -0.99
CTNND1-236ENST00000533667 PMFBP1Q8TBY8 1022 aa8.87□□□□□ -0.99
CTNND1-236ENST00000533667 PHLDB1Q86UU1 1377 aa8.87□□□□□ -0.99
CTNND1-236ENST00000533667 RTF1Q92541 710 aaKnown RBP8.86□□□□□ -0.99
CTNND1-236ENST00000533667 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.86□□□□□ -0.99
CTNND1-236ENST00000533667 PLEKHG5O94827 1062 aa8.86□□□□□ -0.99
CTNND1-236ENST00000533667 RSPH4AQ5TD94 716 aa8.85□□□□□ -0.99
CTNND1-236ENST00000533667 KANK4Q5T7N3 995 aaPredicted RBP8.85□□□□□ -0.99
CTNND1-236ENST00000533667 UBE2Q2Q8WVN8 375 aa8.85□□□□□ -0.99
CTNND1-236ENST00000533667 HTATSF1O43719 755 aaKnown RBP8.84□□□□□ -0.99
CTNND1-236ENST00000533667 MROH2BQ7Z745 1585 aa8.84□□□□□ -0.99
CTNND1-236ENST00000533667 PDS5BQ9NTI5 1447 aa8.84□□□□□ -0.99
CTNND1-236ENST00000533667 HDAC5Q9UQL6 1122 aa8.84□□□□□ -0.99
CTNND1-236ENST00000533667 NUP155O75694 1391 aa8.84□□□□□ -0.99
CTNND1-236ENST00000533667 GOLGA2Q08379 1002 aa8.84□□□□□ -0.99
CTNND1-236ENST00000533667 TPRNQ4KMQ1 711 aa8.84□□□□□ -0.99
CTNND1-236ENST00000533667 KIAA1211Q6ZU35 1233 aa8.84□□□□□ -0.99
CTNND1-236ENST00000533667 SYAP1Q96A49 352 aaPredicted RBP8.84□□□□□ -0.99
CTNND1-236ENST00000533667 HSP90AA2PQ14568 343 aaPredicted RBP8.84□□□□□ -0.99
CTNND1-236ENST00000533667 LMOD2Q6P5Q4 547 aa8.84□□□□□ -0.99
CTNND1-236ENST00000533667 EFCAB2Q5VUJ9 269 aa8.83□□□□□ -1
CTNND1-236ENST00000533667 NLRP13Q86W25 1043 aa8.83□□□□□ -1
CTNND1-236ENST00000533667 TOP2AP11388 1531 aaKnown RBP8.83□□□□□ -1
CTNND1-236ENST00000533667 A0A0U1RQG5 324 aaPredicted RBP8.82□□□□□ -1
CTNND1-236ENST00000533667 ABCC8Q09428 1581 aa8.82□□□□□ -1
CTNND1-236ENST00000533667 NAP1L2Q9ULW6 460 aaPredicted RBP8.82□□□□□ -1
CTNND1-236ENST00000533667 PDE4CQ08493 712 aa8.82□□□□□ -1
CTNND1-236ENST00000533667 U2AF1L5P0DN76 240 aaPredicted RBP8.82□□□□□ -1
CTNND1-236ENST00000533667 U2AF1Q01081 240 aaKnown RBP eCLIP8.82□□□□□ -12e-10■■□□□ 12.3
CTNND1-236ENST00000533667 KIAA2012Q0VF49 1180 aa8.81□□□□□ -1
CTNND1-236ENST00000533667 IPO9Q96P70 1041 aaKnown RBP8.81□□□□□ -1
CTNND1-236ENST00000533667 CCDC18Q5T9S5 1454 aa8.81□□□□□ -1
CTNND1-236ENST00000533667 RAPGEF2Q9Y4G8 1499 aa8.81□□□□□ -1
CTNND1-236ENST00000533667 NPHP1O15259 732 aa8.8□□□□□ -1
CTNND1-236ENST00000533667 HMMRO75330 724 aa8.8□□□□□ -1
CTNND1-236ENST00000533667 ITPRIPQ8IWB1 547 aa8.8□□□□□ -1
CTNND1-236ENST00000533667 DRC7Q8IY82 874 aa8.8□□□□□ -1
CTNND1-236ENST00000533667 LMOD3Q0VAK6 560 aa8.8□□□□□ -1
CTNND1-236ENST00000533667 TERF2IPQ9NYB0 399 aa8.8□□□□□ -1
CTNND1-236ENST00000533667 KIF15Q9NS87 1388 aa8.8□□□□□ -1
CTNND1-236ENST00000533667 CSPP1Q1MSJ5 1256 aa8.79□□□□□ -1
CTNND1-236ENST00000533667 USP35Q9P2H5 1018 aa8.79□□□□□ -1
CTNND1-236ENST00000533667 SPAG9O60271 1321 aaKnown RBP8.79□□□□□ -1
CTNND1-236ENST00000533667 L3MBTL2Q969R5 705 aa8.78□□□□□ -1
CTNND1-236ENST00000533667 STK31Q9BXU1 1019 aa8.78□□□□□ -1
CTNND1-236ENST00000533667 TSHZ2Q9NRE2 1034 aa8.78□□□□□ -1
CTNND1-236ENST00000533667 GPATCH3Q96I76 525 aa8.78□□□□□ -1
CTNND1-236ENST00000533667 GNL2Q13823 731 aaKnown RBP8.78□□□□□ -1
CTNND1-236ENST00000533667 GGT6Q6P531 493 aa8.78□□□□□ -1
CTNND1-236ENST00000533667 CENPJQ9HC77 1338 aaPredicted RBP8.77□□□□□ -1
CTNND1-236ENST00000533667 GOLGA6L3A6NEY3 463 aa8.77□□□□□ -1.01
CTNND1-236ENST00000533667 CCDC34Q96HJ3 373 aa8.77□□□□□ -1.01
CTNND1-236ENST00000533667 FOXD1Q16676 465 aa8.77□□□□□ -1.01
CTNND1-236ENST00000533667 MYBBP1AQ9BQG0 1328 aaKnown RBP8.77□□□□□ -1.01
CTNND1-236ENST00000533667 TPM4P67936 248 aa8.76□□□□□ -1.01
CTNND1-236ENST00000533667 SPRYD3Q8NCJ5 442 aa8.76□□□□□ -1.01
CTNND1-236ENST00000533667 SMC4Q9NTJ3 1288 aa8.76□□□□□ -1.01
CTNND1-236ENST00000533667 SAFB2Q14151 953 aaKnown RBP eCLIP8.76□□□□□ -1.01
CTNND1-236ENST00000533667 NGEFQ8N5V2 710 aa8.75□□□□□ -1.01
CTNND1-236ENST00000533667 UACAQ9BZF9 1416 aa8.75□□□□□ -1.01
CTNND1-236ENST00000533667 STK26Q9P289 416 aa8.75□□□□□ -1.01
CTNND1-236ENST00000533667 APPP05067 770 aa8.75□□□□□ -1.01
CTNND1-236ENST00000533667 TNNT3P45378 269 aaPredicted RBP8.75□□□□□ -1.01
CTNND1-236ENST00000533667 SLKQ9H2G2 1235 aaPredicted RBP8.75□□□□□ -1.01
CTNND1-236ENST00000533667 PHF14O94880 888 aa8.75□□□□□ -1.01
CTNND1-236ENST00000533667 CENPQQ7L2Z9 268 aaPredicted RBP8.74□□□□□ -1.01
CTNND1-236ENST00000533667 DHX57Q6P158 1386 aaKnown RBP8.74□□□□□ -1.01
CTNND1-236ENST00000533667 DDX11L8A8MPP1 907 aa8.74□□□□□ -1.01
CTNND1-236ENST00000533667 HOMEZQ8IX15 550 aa8.74□□□□□ -1.01
CTNND1-236ENST00000533667 MFAP1P55081 439 aaKnown RBP8.73□□□□□ -1.01
CTNND1-236ENST00000533667 TDRD9Q8NDG6 1382 aaKnown RBP8.73□□□□□ -1.01
CTNND1-236ENST00000533667 SOX12O15370 315 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms