RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SCAPERQ9BY12 1400 aa31.31■■■□□ 2.6
CPSF1-209ENST00000532725 KANK4Q5T7N3 995 aaPredicted RBP31.3■■■□□ 2.6
CPSF1-209ENST00000532725 CDC42BPBQ9Y5S2 1711 aa31.29■■■□□ 2.6
CPSF1-209ENST00000532725 ADGRL1O94910 1474 aa31.29■■■□□ 2.6
CPSF1-209ENST00000532725 CCNB3Q8WWL7 1395 aa31.28■■■□□ 2.6
CPSF1-209ENST00000532725 LRRC9Q6ZRR7 1453 aa31.27■■■□□ 2.6
CPSF1-209ENST00000532725 PREX2Q70Z35 1606 aa31.26■■■□□ 2.59
CPSF1-209ENST00000532725 CDC42BPAQ5VT25 1732 aa31.25■■■□□ 2.59
CPSF1-209ENST00000532725 APLP2Q06481 763 aa31.25■■■□□ 2.59
CPSF1-209ENST00000532725 FRMPD1Q5SYB0 1578 aa31.25■■■□□ 2.59
CPSF1-209ENST00000532725 CFDP1Q9UEE9 299 aaPredicted RBP31.24■■■□□ 2.59
CPSF1-209ENST00000532725 ZNF777Q9ULD5 760 aaPredicted RBP31.2■■■□□ 2.59
CPSF1-209ENST00000532725 RICTORQ6R327 1708 aa31.2■■■□□ 2.58
CPSF1-209ENST00000532725 NCOA2Q15596 1464 aa31.2■■■□□ 2.58
CPSF1-209ENST00000532725 POGZQ7Z3K3 1410 aa31.19■■■□□ 2.58
CPSF1-209ENST00000532725 AFAP1Q8N556 730 aa31.18■■■□□ 2.58
CPSF1-209ENST00000532725 ARHGEF12Q9NZN5 1544 aa31.15■■■□□ 2.58
CPSF1-209ENST00000532725 SUPT6HQ7KZ85 1726 aaKnown RBP31.15■■■□□ 2.58
CPSF1-209ENST00000532725 KDM4FA0A1W2PPD8 638 aa31.11■■■□□ 2.57
CPSF1-209ENST00000532725 ZMYM4Q5VZL5 1548 aa31.11■■■□□ 2.57
CPSF1-209ENST00000532725 ABCC1P33527 1531 aa31.1■■■□□ 2.57
CPSF1-209ENST00000532725 TRAPPC8Q9Y2L5 1435 aa31.1■■■□□ 2.57
CPSF1-209ENST00000532725 ZNF644Q9H582 1327 aaPredicted RBP31.1■■■□□ 2.57
CPSF1-209ENST00000532725 HNRNPMP52272 730 aaKnown RBP eCLIP31.1■■■□□ 2.57
CPSF1-209ENST00000532725 SAMD9LQ8IVG5 1584 aa31.09■■■□□ 2.57
CPSF1-209ENST00000532725 ZNF518AQ6AHZ1 1483 aa31.09■■■□□ 2.57
CPSF1-209ENST00000532725 MAGI2Q86UL8 1455 aa31.09■■■□□ 2.57
CPSF1-209ENST00000532725 KIAA1107Q9UPP5 1409 aa31.08■■■□□ 2.57
CPSF1-209ENST00000532725 YEATS2Q9ULM3 1422 aa31.06■■■□□ 2.56
CPSF1-209ENST00000532725 PLEKHH2Q8IVE3 1493 aa31.04■■■□□ 2.56
CPSF1-209ENST00000532725 KDM5CP41229 1560 aa31.03■■■□□ 2.56
CPSF1-209ENST00000532725 ITSN2Q9NZM3 1697 aa31.03■■■□□ 2.56
CPSF1-209ENST00000532725 ZFYVE16Q7Z3T8 1539 aa31.01■■■□□ 2.55
CPSF1-209ENST00000532725 ARHGEF40Q8TER5 1519 aa30.99■■■□□ 2.55
CPSF1-209ENST00000532725 SYCP2Q9BX26 1530 aa30.99■■■□□ 2.55
CPSF1-209ENST00000532725 MLH3Q9UHC1 1453 aa30.99■■■□□ 2.55
CPSF1-209ENST00000532725 MYT1LQ9UL68 1186 aa30.97■■■□□ 2.55
CPSF1-209ENST00000532725 MBD5Q9P267 1494 aa30.96■■■□□ 2.55
CPSF1-209ENST00000532725 AEBP2Q6ZN18 517 aaPredicted RBP30.95■■■□□ 2.55
CPSF1-209ENST00000532725 MYOM3Q5VTT5 1437 aa30.95■■■□□ 2.54
CPSF1-209ENST00000532725 ATP10AO60312 1499 aa30.95■■■□□ 2.54
CPSF1-209ENST00000532725 SPAG9O60271 1321 aaKnown RBP30.93■■■□□ 2.54
CPSF1-209ENST00000532725 ARID4BQ4LE39 1312 aaPredicted RBP30.93■■■□□ 2.54
CPSF1-209ENST00000532725 MIA2Q96PC5 1412 aa30.92■■■□□ 2.54
CPSF1-209ENST00000532725 RSPH4AQ5TD94 716 aa30.91■■■□□ 2.54
CPSF1-209ENST00000532725 HECW2Q9P2P5 1572 aa30.91■■■□□ 2.54
CPSF1-209ENST00000532725 CAMSAP2Q08AD1 1489 aa30.9■■■□□ 2.54
CPSF1-209ENST00000532725 C9orf84Q5VXU9 1444 aa30.86■■■□□ 2.53
CPSF1-209ENST00000532725 KIDINS220Q9ULH0 1771 aa30.85■■■□□ 2.53
CPSF1-209ENST00000532725 DIP2CQ9Y2E4 1556 aa30.83■■■□□ 2.53
CPSF1-209ENST00000532725 SIGLEC1Q9BZZ2 1709 aa30.82■■■□□ 2.52
CPSF1-209ENST00000532725 ABCA6Q8N139 1617 aa30.8■■■□□ 2.52
CPSF1-209ENST00000532725 CCDC141Q6ZP82 1450 aa30.79■■■□□ 2.52
CPSF1-209ENST00000532725 PPARGC1BQ86YN6 1023 aaKnown RBP30.78■■■□□ 2.52
CPSF1-209ENST00000532725 RTEL1-TNFRSF6BF6WH68 1400 aa30.78■■■□□ 2.52
CPSF1-209ENST00000532725 ATP7AQ04656 1500 aa30.78■■■□□ 2.52
CPSF1-209ENST00000532725 TSPY4P0CV99 314 aa30.77■■■□□ 2.52
CPSF1-209ENST00000532725 TSPY10P0CW01 314 aa30.77■■■□□ 2.52
CPSF1-209ENST00000532725 FGD6Q6ZV73 1430 aa30.77■■■□□ 2.52
CPSF1-209ENST00000532725 BCORL1Q5H9F3 1711 aa30.76■■■□□ 2.52
CPSF1-209ENST00000532725 ARHGEF5Q12774 1597 aa30.76■■■□□ 2.52
CPSF1-209ENST00000532725 MLECQ14165 292 aa30.76■■■□□ 2.51
CPSF1-209ENST00000532725 REREQ9P2R6 1566 aa30.75■■■□□ 2.51
CPSF1-209ENST00000532725 ADAMTSL3P82987 1691 aa30.75■■■□□ 2.51
CPSF1-209ENST00000532725 INO80Q9ULG1 1556 aaPredicted RBP30.75■■■□□ 2.51
CPSF1-209ENST00000532725 PTPN23Q9H3S7 1636 aa30.71■■■□□ 2.51
CPSF1-209ENST00000532725 TCOF1Q13428 1488 aaKnown RBP30.7■■■□□ 2.51
CPSF1-209ENST00000532725 AGLP35573 1532 aa30.69■■■□□ 2.5
CPSF1-209ENST00000532725 A2MP01023 1474 aa30.67■■■□□ 2.5
CPSF1-209ENST00000532725 ABCC5O15440 1437 aa30.64■■■□□ 2.5
CPSF1-209ENST00000532725 DHX29Q7Z478 1369 aaKnown RBP30.63■■■□□ 2.49
CPSF1-209ENST00000532725 MADDQ8WXG6 1647 aa30.62■■■□□ 2.49
CPSF1-209ENST00000532725 PTPRMP28827 1452 aa30.62■■■□□ 2.49
CPSF1-209ENST00000532725 FAM50AQ14320 339 aaKnown RBP30.61■■■□□ 2.49
CPSF1-209ENST00000532725 PLXNC1O60486 1568 aa30.59■■■□□ 2.49
CPSF1-209ENST00000532725 MAST1Q9Y2H9 1570 aa30.59■■■□□ 2.49
CPSF1-209ENST00000532725 ADGBQ8N7X0 1667 aa30.58■■■□□ 2.49
CPSF1-209ENST00000532725 DAPK1P53355 1430 aa30.57■■■□□ 2.48
CPSF1-209ENST00000532725 DNMT1P26358 1616 aaKnown RBP30.53■■■□□ 2.48
CPSF1-209ENST00000532725 SHANK2Q9UPX8 1470 aa30.52■■■□□ 2.48
CPSF1-209ENST00000532725 RIMS1Q86UR5 1692 aaKnown RBP30.52■■■□□ 2.48
CPSF1-209ENST00000532725 GGT6Q6P531 493 aa30.51■■■□□ 2.47
CPSF1-209ENST00000532725 KIF3BO15066 747 aa30.5■■■□□ 2.47
CPSF1-209ENST00000532725 CHIC2Q9UKJ5 165 aa30.5■■■□□ 2.47
CPSF1-209ENST00000532725 FER1L4A9Z1Z3 1794 aa30.49■■■□□ 2.47
CPSF1-209ENST00000532725 ESF1Q9H501 851 aaKnown RBP30.48■■■□□ 2.47
CPSF1-209ENST00000532725 RRP7BPQ9NSQ0 103 aa30.48■■■□□ 2.47
CPSF1-209ENST00000532725 PPP6R1Q9UPN7 881 aa30.48■■■□□ 2.47
CPSF1-209ENST00000532725 CEBPAP49715 358 aaPredicted RBP30.46■■■□□ 2.47
CPSF1-209ENST00000532725 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.45■■■□□ 2.47
CPSF1-209ENST00000532725 PLPPR3Q6T4P5 718 aa30.45■■■□□ 2.47
CPSF1-209ENST00000532725 CROCC2H7BZ55 1655 aa30.45■■■□□ 2.46
CPSF1-209ENST00000532725 ANKRD30AQ9BXX3 1397 aa30.42■■■□□ 2.46
CPSF1-209ENST00000532725 KIF15Q9NS87 1388 aa30.42■■■□□ 2.46
CPSF1-209ENST00000532725 NCOA1Q15788 1441 aa30.42■■■□□ 2.46
CPSF1-209ENST00000532725 PTPRKQ15262 1439 aa30.41■■■□□ 2.46
CPSF1-209ENST00000532725 CNTLNQ9NXG0 1405 aa30.41■■■□□ 2.46
CPSF1-209ENST00000532725 DUOX2Q9NRD8 1548 aa30.39■■■□□ 2.46
CPSF1-209ENST00000532725 RRBP1Q9P2E9 1410 aaKnown RBP30.39■■■□□ 2.45
CPSF1-209ENST00000532725 ZMYM3Q14202 1370 aa30.37■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 186.9 ms