RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ZMYM4Q5VZL5 1548 aa23.9■■□□□ 1.42
VPS28-215ENST00000531924 MYT1LQ9UL68 1186 aa23.89■■□□□ 1.41
VPS28-215ENST00000531924 CASKIN1Q8WXD9 1431 aa23.89■■□□□ 1.41
VPS28-215ENST00000531924 MYO5CQ9NQX4 1742 aa23.88■■□□□ 1.41
VPS28-215ENST00000531924 YEATS2Q9ULM3 1422 aa23.88■■□□□ 1.41
VPS28-215ENST00000531924 ARHGAP5Q13017 1502 aa23.88■■□□□ 1.41
VPS28-215ENST00000531924 CCDC18Q5T9S5 1454 aa23.87■■□□□ 1.41
VPS28-215ENST00000531924 MADDQ8WXG6 1647 aa23.86■■□□□ 1.41
VPS28-215ENST00000531924 MLECQ14165 292 aa23.86■■□□□ 1.41
VPS28-215ENST00000531924 PLPPR3Q6T4P5 718 aa23.86■■□□□ 1.41
VPS28-215ENST00000531924 PCF11O94913 1555 aaKnown RBP23.82■■□□□ 1.4
VPS28-215ENST00000531924 ILDR1Q86SU0 546 aaPredicted RBP23.82■■□□□ 1.4
VPS28-215ENST00000531924 ZNF518AQ6AHZ1 1483 aa23.81■■□□□ 1.4
VPS28-215ENST00000531924 AFAP1Q8N556 730 aa23.8■■□□□ 1.4
VPS28-215ENST00000531924 ATP10AO60312 1499 aa23.8■■□□□ 1.4
VPS28-215ENST00000531924 FYCO1Q9BQS8 1478 aa23.79■■□□□ 1.4
VPS28-215ENST00000531924 RIMS1Q86UR5 1692 aaKnown RBP23.78■■□□□ 1.4
VPS28-215ENST00000531924 LRRIQ1Q96JM4 1722 aa23.78■■□□□ 1.4
VPS28-215ENST00000531924 C9orf84Q5VXU9 1444 aa23.77■■□□□ 1.4
VPS28-215ENST00000531924 ZNF777Q9ULD5 760 aaPredicted RBP23.72■■□□□ 1.39
VPS28-215ENST00000531924 SIGLEC1Q9BZZ2 1709 aa23.68■■□□□ 1.38
VPS28-215ENST00000531924 PREX2Q70Z35 1606 aa23.68■■□□□ 1.38
VPS28-215ENST00000531924 KDM5CP41229 1560 aa23.68■■□□□ 1.38
VPS28-215ENST00000531924 LMTK3Q96Q04 1460 aa23.68■■□□□ 1.38
VPS28-215ENST00000531924 CDC42BPBQ9Y5S2 1711 aa23.67■■□□□ 1.38
VPS28-215ENST00000531924 HSPA2P54652 639 aa23.65■■□□□ 1.38
VPS28-215ENST00000531924 ESF1Q9H501 851 aaKnown RBP23.65■■□□□ 1.38
VPS28-215ENST00000531924 TRAPPC8Q9Y2L5 1435 aa23.65■■□□□ 1.38
VPS28-215ENST00000531924 FER1L4A9Z1Z3 1794 aa23.65■■□□□ 1.38
VPS28-215ENST00000531924 ABCC1P33527 1531 aa23.64■■□□□ 1.38
VPS28-215ENST00000531924 MLH3Q9UHC1 1453 aa23.64■■□□□ 1.38
VPS28-215ENST00000531924 MTUS2Q5JR59 1369 aa23.64■■□□□ 1.37
VPS28-215ENST00000531924 ARHGEF12Q9NZN5 1544 aa23.64■■□□□ 1.37
VPS28-215ENST00000531924 CFDP1Q9UEE9 299 aaPredicted RBP23.62■■□□□ 1.37
VPS28-215ENST00000531924 CCNB3Q8WWL7 1395 aa23.61■■□□□ 1.37
VPS28-215ENST00000531924 CEBPAP49715 358 aaPredicted RBP23.6■■□□□ 1.37
VPS28-215ENST00000531924 DIP2CQ9Y2E4 1556 aa23.6■■□□□ 1.37
VPS28-215ENST00000531924 CDC42BPAQ5VT25 1732 aa23.59■■□□□ 1.37
VPS28-215ENST00000531924 GPATCH8Q9UKJ3 1502 aaKnown RBP23.59■■□□□ 1.37
VPS28-215ENST00000531924 HNRNPMP52272 730 aaKnown RBP eCLIP23.58■■□□□ 1.37
VPS28-215ENST00000531924 SPAG9O60271 1321 aaKnown RBP23.58■■□□□ 1.36
VPS28-215ENST00000531924 ITSN2Q9NZM3 1697 aa23.57■■□□□ 1.36
VPS28-215ENST00000531924 CEP162Q5TB80 1403 aa23.56■■□□□ 1.36
VPS28-215ENST00000531924 ABCA6Q8N139 1617 aa23.55■■□□□ 1.36
VPS28-215ENST00000531924 REREQ9P2R6 1566 aa23.55■■□□□ 1.36
VPS28-215ENST00000531924 PLEKHH2Q8IVE3 1493 aa23.54■■□□□ 1.36
VPS28-215ENST00000531924 SYCP2Q9BX26 1530 aa23.53■■□□□ 1.36
VPS28-215ENST00000531924 FBXO41Q8TF61 875 aa23.52■■□□□ 1.36
VPS28-215ENST00000531924 SAMD9LQ8IVG5 1584 aa23.52■■□□□ 1.36
VPS28-215ENST00000531924 AGLP35573 1532 aa23.51■■□□□ 1.35
VPS28-215ENST00000531924 KIAA1107Q9UPP5 1409 aa23.5■■□□□ 1.35
VPS28-215ENST00000531924 KIDINS220Q9ULH0 1771 aa23.47■■□□□ 1.35
VPS28-215ENST00000531924 UHRF1BP1Q6BDS2 1440 aa23.47■■□□□ 1.35
VPS28-215ENST00000531924 EHBP1L1Q8N3D4 1523 aa23.46■■□□□ 1.35
VPS28-215ENST00000531924 CNTLNQ9NXG0 1405 aa23.45■■□□□ 1.34
VPS28-215ENST00000531924 PREX1Q8TCU6 1659 aa23.44■■□□□ 1.34
VPS28-215ENST00000531924 DMRT2Q9Y5R5 561 aa23.43■■□□□ 1.34
VPS28-215ENST00000531924 ZNF644Q9H582 1327 aaPredicted RBP23.42■■□□□ 1.34
VPS28-215ENST00000531924 ATP7AQ04656 1500 aa23.42■■□□□ 1.34
VPS28-215ENST00000531924 LOC105371045A0A1W2PR82 267 aa23.4■■□□□ 1.34
VPS28-215ENST00000531924 TIAM1Q13009 1591 aa23.39■■□□□ 1.33
VPS28-215ENST00000531924 A2MP01023 1474 aa23.38■■□□□ 1.33
VPS28-215ENST00000531924 GGT6Q6P531 493 aa23.37■■□□□ 1.33
VPS28-215ENST00000531924 C3P01024 1663 aa23.37■■□□□ 1.33
VPS28-215ENST00000531924 SETD1BQ9UPS6 1966 aaKnown RBP23.35■■□□□ 1.33
VPS28-215ENST00000531924 SUPT6HQ7KZ85 1726 aaKnown RBP23.35■■□□□ 1.33
VPS28-215ENST00000531924 INO80Q9ULG1 1556 aaPredicted RBP23.35■■□□□ 1.33
VPS28-215ENST00000531924 CERKQ8TCT0 537 aa23.34■■□□□ 1.33
VPS28-215ENST00000531924 ZMYM3Q14202 1370 aa23.34■■□□□ 1.33
VPS28-215ENST00000531924 NCOA2Q15596 1464 aa23.34■■□□□ 1.33
VPS28-215ENST00000531924 MBD5Q9P267 1494 aa23.31■■□□□ 1.32
VPS28-215ENST00000531924 RSPH4AQ5TD94 716 aa23.31■■□□□ 1.32
VPS28-215ENST00000531924 VPS8Q8N3P4 1428 aa23.31■■□□□ 1.32
VPS28-215ENST00000531924 PPP6R1Q9UPN7 881 aa23.3■■□□□ 1.32
VPS28-215ENST00000531924 RTEL1-TNFRSF6BF6WH68 1400 aa23.29■■□□□ 1.32
VPS28-215ENST00000531924 PLXNC1O60486 1568 aa23.29■■□□□ 1.32
VPS28-215ENST00000531924 NPATQ14207 1427 aa23.29■■□□□ 1.32
VPS28-215ENST00000531924 TSPY4P0CV99 314 aa23.27■■□□□ 1.32
VPS28-215ENST00000531924 TSPY10P0CW01 314 aa23.27■■□□□ 1.32
VPS28-215ENST00000531924 CCDC141Q6ZP82 1450 aa23.27■■□□□ 1.32
VPS28-215ENST00000531924 MROH2AA6NES4 1674 aa23.26■■□□□ 1.31
VPS28-215ENST00000531924 ADGBQ8N7X0 1667 aa23.26■■□□□ 1.31
VPS28-215ENST00000531924 CAMSAP2Q08AD1 1489 aa23.26■■□□□ 1.31
VPS28-215ENST00000531924 DHX29Q7Z478 1369 aaKnown RBP23.25■■□□□ 1.31
VPS28-215ENST00000531924 KIF3BO15066 747 aa23.24■■□□□ 1.31
VPS28-215ENST00000531924 LRRC9Q6ZRR7 1453 aa23.24■■□□□ 1.31
VPS28-215ENST00000531924 CLTCQ00610 1675 aaKnown RBP23.23■■□□□ 1.31
VPS28-215ENST00000531924 STRCQ7RTU9 1775 aa23.22■■□□□ 1.31
VPS28-215ENST00000531924 APLP2Q06481 763 aa23.21■■□□□ 1.31
VPS28-215ENST00000531924 PTPRTO14522 1441 aa23.21■■□□□ 1.31
VPS28-215ENST00000531924 PTPRKQ15262 1439 aa23.18■■□□□ 1.3
VPS28-215ENST00000531924 NCOA1Q15788 1441 aa23.18■■□□□ 1.3
VPS28-215ENST00000531924 KANK4Q5T7N3 995 aaPredicted RBP23.17■■□□□ 1.3
VPS28-215ENST00000531924 WASHC2CQ9Y4E1 1318 aa23.16■■□□□ 1.3
VPS28-215ENST00000531924 CAMSAP1Q5T5Y3 1602 aa23.15■■□□□ 1.3
VPS28-215ENST00000531924 MAP3K1Q13233 1512 aa23.14■■□□□ 1.3
VPS28-215ENST00000531924 ARHGEF5Q12774 1597 aa23.14■■□□□ 1.29
VPS28-215ENST00000531924 NCKAP5LQ9HCH0 1330 aa23.13■■□□□ 1.29
VPS28-215ENST00000531924 PKD2Q13563 968 aa23.12■■□□□ 1.29
VPS28-215ENST00000531924 MYO3AQ8NEV4 1616 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms