RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 JPH4Q96JJ6 628 aa11.91□□□□□ -0.5
CD44-228ENST00000528455 TNIKQ9UKE5 1360 aa11.89□□□□□ -0.51
CD44-228ENST00000528455 SHROOM2Q13796 1616 aa11.89□□□□□ -0.51
CD44-228ENST00000528455 ERCC6L2Q5T890 1561 aa11.88□□□□□ -0.51
CD44-228ENST00000528455 PRG4Q92954 1404 aaPredicted RBP11.87□□□□□ -0.51
CD44-228ENST00000528455 RGL2O15211 777 aa11.85□□□□□ -0.51
CD44-228ENST00000528455 CHRM1P11229 460 aaPredicted RBP11.85□□□□□ -0.51
CD44-228ENST00000528455 CD44P16070 742 aaKnown RBP11.85□□□□□ -0.51
CD44-228ENST00000528455 CCDC61Q9Y6R9 512 aa11.85□□□□□ -0.51
CD44-228ENST00000528455 KIAA0586Q9BVV6 1533 aa11.85□□□□□ -0.51
CD44-228ENST00000528455 C19orf67A6NJJ6 358 aa11.84□□□□□ -0.51
CD44-228ENST00000528455 PAK3O75914 559 aaPredicted RBP11.83□□□□□ -0.52
CD44-228ENST00000528455 PYGBP11216 843 aa11.83□□□□□ -0.52
CD44-228ENST00000528455 POTEHQ6S545 545 aa11.8□□□□□ -0.52
CD44-228ENST00000528455 RNF25Q96BH1 459 aaPredicted RBP11.8□□□□□ -0.52
CD44-228ENST00000528455 ZRANB1Q9UGI0 708 aa11.8□□□□□ -0.52
CD44-228ENST00000528455 CTTNBP2Q8WZ74 1663 aa11.79□□□□□ -0.52
CD44-228ENST00000528455 HAX1O00165 279 aa11.76□□□□□ -0.53
CD44-228ENST00000528455 IQGAP2Q13576 1575 aa11.75□□□□□ -0.53
CD44-228ENST00000528455 CARMIL2Q6F5E8 1435 aa11.75□□□□□ -0.53
CD44-228ENST00000528455 PTPRGP23470 1445 aa11.73□□□□□ -0.53
CD44-228ENST00000528455 EVX2Q03828 476 aa11.73□□□□□ -0.53
CD44-228ENST00000528455 KIF12Q96FN5 646 aa11.73□□□□□ -0.53
CD44-228ENST00000528455 UGGT2Q9NYU1 1516 aa11.73□□□□□ -0.53
CD44-228ENST00000528455 CLIP1P30622 1438 aa11.72□□□□□ -0.53
CD44-228ENST00000528455 CEP162Q5TB80 1403 aa11.72□□□□□ -0.53
CD44-228ENST00000528455 RIOK3O14730 519 aaKnown RBP11.72□□□□□ -0.53
CD44-228ENST00000528455 RANGAP1P46060 587 aaPredicted RBP11.72□□□□□ -0.53
CD44-228ENST00000528455 ZNF579Q8NAF0 562 aaKnown RBP11.72□□□□□ -0.53
CD44-228ENST00000528455 PHF12Q96QT6 1004 aa11.72□□□□□ -0.53
CD44-228ENST00000528455 TTBK1Q5TCY1 1321 aaPredicted RBP11.71□□□□□ -0.53
CD44-228ENST00000528455 MAP3K13O43283 966 aa11.7□□□□□ -0.54
CD44-228ENST00000528455 ADCY10Q96PN6 1610 aa11.68□□□□□ -0.54
CD44-228ENST00000528455 P3H3Q8IVL6 736 aa11.68□□□□□ -0.54
CD44-228ENST00000528455 EFCAB5A4FU69 1503 aa11.68□□□□□ -0.54
CD44-228ENST00000528455 ARHGAP35Q9NRY4 1499 aa11.68□□□□□ -0.54
CD44-228ENST00000528455 SGIP1Q9BQI5 828 aa11.67□□□□□ -0.54
CD44-228ENST00000528455 MAPKBP1O60336 1514 aa11.66□□□□□ -0.54
CD44-228ENST00000528455 DISP1Q96F81 1524 aa11.66□□□□□ -0.54
CD44-228ENST00000528455 FAM69CQ0P6D2 419 aa11.66□□□□□ -0.54
CD44-228ENST00000528455 ZNF467Q7Z7K2 595 aaPredicted RBP11.66□□□□□ -0.54
CD44-228ENST00000528455 PCDHB8Q9UN66 801 aa11.66□□□□□ -0.54
CD44-228ENST00000528455 PCDHB13Q9Y5F0 798 aa11.66□□□□□ -0.54
CD44-228ENST00000528455 SAMD9Q5K651 1589 aa11.66□□□□□ -0.54
CD44-228ENST00000528455 VGFO15240 615 aaPredicted RBP11.65□□□□□ -0.54
CD44-228ENST00000528455 ABCC10Q5T3U5 1492 aa11.64□□□□□ -0.55
CD44-228ENST00000528455 IFNL1Q8IU54 200 aa11.64□□□□□ -0.55
CD44-228ENST00000528455 KIF13AQ9H1H9 1805 aa11.64□□□□□ -0.55
CD44-228ENST00000528455 UACAQ9BZF9 1416 aa11.63□□□□□ -0.55
CD44-228ENST00000528455 TAOK2Q9UL54 1235 aa11.63□□□□□ -0.55
CD44-228ENST00000528455 ABCC2Q92887 1545 aa11.62□□□□□ -0.55
CD44-228ENST00000528455 UHRF1BP1LA0JNW5 1464 aa11.62□□□□□ -0.55
CD44-228ENST00000528455 FMN1Q68DA7 1419 aa11.61□□□□□ -0.55
CD44-228ENST00000528455 KIAA0556O60303 1618 aa11.61□□□□□ -0.55
CD44-228ENST00000528455 CHGAP10645 457 aaKnown RBP11.61□□□□□ -0.55
CD44-228ENST00000528455 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.59□□□□□ -0.55
CD44-228ENST00000528455 HS6ST3Q8IZP7 471 aa11.59□□□□□ -0.55
CD44-228ENST00000528455 MS4A3Q96HJ5 214 aa11.59□□□□□ -0.55
CD44-228ENST00000528455 ZFP91Q96JP5 570 aaPredicted RBP11.59□□□□□ -0.55
CD44-228ENST00000528455 FHOD3Q2V2M9 1422 aa11.59□□□□□ -0.55
CD44-228ENST00000528455 DIP2BQ9P265 1576 aa11.58□□□□□ -0.55
CD44-228ENST00000528455 VPS8Q8N3P4 1428 aa11.58□□□□□ -0.56
CD44-228ENST00000528455 PLB1Q6P1J6 1458 aa11.57□□□□□ -0.56
CD44-228ENST00000528455 PDAP1Q13442 181 aaKnown RBP11.57□□□□□ -0.56
CD44-228ENST00000528455 ASXL2Q76L83 1435 aa11.57□□□□□ -0.56
CD44-228ENST00000528455 KDM5BQ9UGL1 1544 aa11.55□□□□□ -0.56
CD44-228ENST00000528455 CASKIN1Q8WXD9 1431 aa11.55□□□□□ -0.56
CD44-228ENST00000528455 STK25O00506 426 aa11.55□□□□□ -0.56
CD44-228ENST00000528455 PSEN1P49768 467 aa11.55□□□□□ -0.56
CD44-228ENST00000528455 ATP1B4Q9UN42 357 aaPredicted RBP11.54□□□□□ -0.56
CD44-228ENST00000528455 GALR2O43603 387 aaPredicted RBP11.53□□□□□ -0.56
CD44-228ENST00000528455 CLCN6P51797 869 aa11.53□□□□□ -0.56
CD44-228ENST00000528455 BBXQ8WY36 941 aaPredicted RBP11.53□□□□□ -0.56
CD44-228ENST00000528455 BCL11BQ9C0K0 894 aaPredicted RBP11.53□□□□□ -0.56
CD44-228ENST00000528455 TRPC6Q9Y210 931 aa11.53□□□□□ -0.56
CD44-228ENST00000528455 TSPOAP1O95153 1857 aa11.52□□□□□ -0.57
CD44-228ENST00000528455 ZCCHC11Q5TAX3 1644 aaKnown RBP11.52□□□□□ -0.57
CD44-228ENST00000528455 GLI2P10070 1586 aa11.5□□□□□ -0.57
CD44-228ENST00000528455 STK24Q9Y6E0 443 aa11.5□□□□□ -0.57
CD44-228ENST00000528455 FYCO1Q9BQS8 1478 aa11.5□□□□□ -0.57
CD44-228ENST00000528455 MAP3K1Q13233 1512 aa11.5□□□□□ -0.57
CD44-228ENST00000528455 ABCA8O94911 1581 aa11.5□□□□□ -0.57
CD44-228ENST00000528455 CDK11AQ9UQ88 783 aaPredicted RBP11.49□□□□□ -0.57
CD44-228ENST00000528455 EPRSP07814 1512 aaKnown RBP11.49□□□□□ -0.57
CD44-228ENST00000528455 RAPGEF6Q8TEU7 1601 aa11.49□□□□□ -0.57
CD44-228ENST00000528455 GABBR2O75899 941 aa11.48□□□□□ -0.57
CD44-228ENST00000528455 KCNH8Q96L42 1107 aa11.48□□□□□ -0.57
CD44-228ENST00000528455 WDR7Q9Y4E6 1490 aa11.48□□□□□ -0.57
CD44-228ENST00000528455 KDM6BO15054 1643 aa11.47□□□□□ -0.57
CD44-228ENST00000528455 PLEKHD1A6NEE1 506 aa11.46□□□□□ -0.57
CD44-228ENST00000528455 HECW1Q76N89 1606 aa11.46□□□□□ -0.58
CD44-228ENST00000528455 ATP10BO94823 1461 aa11.45□□□□□ -0.58
CD44-228ENST00000528455 NUP153P49790 1475 aaKnown RBP11.45□□□□□ -0.58
CD44-228ENST00000528455 CCDC18Q5T9S5 1454 aa11.45□□□□□ -0.58
CD44-228ENST00000528455 ARID3CA6NKF2 412 aa11.45□□□□□ -0.58
CD44-228ENST00000528455 NKX1-1Q15270 411 aaPredicted RBP11.45□□□□□ -0.58
CD44-228ENST00000528455 PCF11O94913 1555 aaKnown RBP11.45□□□□□ -0.58
CD44-228ENST00000528455 TIE1P35590 1138 aa11.44□□□□□ -0.58
CD44-228ENST00000528455 TMEM106CQ9BVX2 250 aa11.44□□□□□ -0.58
CD44-228ENST00000528455 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms