RNA–Protein interactions for RNA: ENST00000526829.1

VPS11-202, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS11, Length 1,952 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-202ENST00000526829 MAGI2Q86UL8 1455 aa17.29■□□□□ 0.36
VPS11-202ENST00000526829 ARID4BQ4LE39 1312 aaPredicted RBP17.29■□□□□ 0.36
VPS11-202ENST00000526829 ZFYVE16Q7Z3T8 1539 aa17.29■□□□□ 0.36
VPS11-202ENST00000526829 EHMT2Q96KQ7 1210 aa17.27■□□□□ 0.36
VPS11-202ENST00000526829 PCGF6Q9BYE7 350 aa17.27■□□□□ 0.36
VPS11-202ENST00000526829 SIGLEC1Q9BZZ2 1709 aa17.27■□□□□ 0.35
VPS11-202ENST00000526829 POGZQ7Z3K3 1410 aa17.26■□□□□ 0.35
VPS11-202ENST00000526829 YEATS2Q9ULM3 1422 aa17.26■□□□□ 0.35
VPS11-202ENST00000526829 MYO5CQ9NQX4 1742 aa17.26■□□□□ 0.35
VPS11-202ENST00000526829 RIMS1Q86UR5 1692 aaKnown RBP17.26■□□□□ 0.35
VPS11-202ENST00000526829 SCAPERQ9BY12 1400 aa17.25■□□□□ 0.35
VPS11-202ENST00000526829 KIF14Q15058 1648 aa17.24■□□□□ 0.35
VPS11-202ENST00000526829 PCF11O94913 1555 aaKnown RBP17.24■□□□□ 0.35
VPS11-202ENST00000526829 LRRIQ1Q96JM4 1722 aa17.24■□□□□ 0.35
VPS11-202ENST00000526829 ATP1B4Q9UN42 357 aaPredicted RBP17.24■□□□□ 0.35
VPS11-202ENST00000526829 CDK11AQ9UQ88 783 aaPredicted RBP17.24■□□□□ 0.35
VPS11-202ENST00000526829 TROQ12816 1431 aaPredicted RBP17.23■□□□□ 0.35
VPS11-202ENST00000526829 LMTK3Q96Q04 1460 aa17.22■□□□□ 0.35
VPS11-202ENST00000526829 PPARGC1BQ86YN6 1023 aaKnown RBP17.22■□□□□ 0.35
VPS11-202ENST00000526829 EFCAB2Q5VUJ9 269 aa17.21■□□□□ 0.35
VPS11-202ENST00000526829 CLIP1P30622 1438 aa17.18■□□□□ 0.34
VPS11-202ENST00000526829 ATP10AO60312 1499 aa17.18■□□□□ 0.34
VPS11-202ENST00000526829 FER1L4A9Z1Z3 1794 aa17.17■□□□□ 0.34
VPS11-202ENST00000526829 KDM5CP41229 1560 aa17.16■□□□□ 0.34
VPS11-202ENST00000526829 C9orf84Q5VXU9 1444 aa17.16■□□□□ 0.34
VPS11-202ENST00000526829 CASKIN1Q8WXD9 1431 aa17.16■□□□□ 0.34
VPS11-202ENST00000526829 ARHGAP5Q13017 1502 aa17.16■□□□□ 0.34
VPS11-202ENST00000526829 ZNF518AQ6AHZ1 1483 aa17.15■□□□□ 0.34
VPS11-202ENST00000526829 ARHGEF12Q9NZN5 1544 aa17.15■□□□□ 0.34
VPS11-202ENST00000526829 CDC42BPBQ9Y5S2 1711 aa17.14■□□□□ 0.34
VPS11-202ENST00000526829 CCDC18Q5T9S5 1454 aa17.14■□□□□ 0.33
VPS11-202ENST00000526829 PREX2Q70Z35 1606 aa17.13■□□□□ 0.33
VPS11-202ENST00000526829 MLECQ14165 292 aa17.11■□□□□ 0.33
VPS11-202ENST00000526829 REREQ9P2R6 1566 aa17.1■□□□□ 0.33
VPS11-202ENST00000526829 DIP2CQ9Y2E4 1556 aa17.1■□□□□ 0.33
VPS11-202ENST00000526829 AFAP1Q8N556 730 aa17.09■□□□□ 0.33
VPS11-202ENST00000526829 FBXO41Q8TF61 875 aa17.09■□□□□ 0.33
VPS11-202ENST00000526829 ABCC1P33527 1531 aa17.09■□□□□ 0.33
VPS11-202ENST00000526829 FYCO1Q9BQS8 1478 aa17.09■□□□□ 0.33
VPS11-202ENST00000526829 MLH3Q9UHC1 1453 aa17.09■□□□□ 0.33
VPS11-202ENST00000526829 ITSN2Q9NZM3 1697 aa17.08■□□□□ 0.32
VPS11-202ENST00000526829 EIF5BO60841 1220 aaKnown RBP17.07■□□□□ 0.32
VPS11-202ENST00000526829 CDC42BPAQ5VT25 1732 aa17.07■□□□□ 0.32
VPS11-202ENST00000526829 ABCA6Q8N139 1617 aa17.06■□□□□ 0.32
VPS11-202ENST00000526829 HSPA2P54652 639 aa17.06■□□□□ 0.32
VPS11-202ENST00000526829 PLPPR3Q6T4P5 718 aa17.06■□□□□ 0.32
VPS11-202ENST00000526829 TRAPPC8Q9Y2L5 1435 aa17.05■□□□□ 0.32
VPS11-202ENST00000526829 PREX1Q8TCU6 1659 aa17.05■□□□□ 0.32
VPS11-202ENST00000526829 AGLP35573 1532 aa17.03■□□□□ 0.32
VPS11-202ENST00000526829 KIDINS220Q9ULH0 1771 aa17.01■□□□□ 0.31
VPS11-202ENST00000526829 MYT1LQ9UL68 1186 aa17.01■□□□□ 0.31
VPS11-202ENST00000526829 CEBPAP49715 358 aaPredicted RBP16.99■□□□□ 0.31
VPS11-202ENST00000526829 SAMD9LQ8IVG5 1584 aa16.99■□□□□ 0.31
VPS11-202ENST00000526829 GPATCH8Q9UKJ3 1502 aaKnown RBP16.99■□□□□ 0.31
VPS11-202ENST00000526829 SETD1BQ9UPS6 1966 aaKnown RBP16.98■□□□□ 0.31
VPS11-202ENST00000526829 C3P01024 1663 aa16.97■□□□□ 0.31
VPS11-202ENST00000526829 SYCP2Q9BX26 1530 aa16.95■□□□□ 0.3
VPS11-202ENST00000526829 UHRF1BP1Q6BDS2 1440 aa16.94■□□□□ 0.3
VPS11-202ENST00000526829 STRCQ7RTU9 1775 aa16.94■□□□□ 0.3
VPS11-202ENST00000526829 KIAA1107Q9UPP5 1409 aa16.93■□□□□ 0.3
VPS11-202ENST00000526829 PLEKHH2Q8IVE3 1493 aa16.92■□□□□ 0.3
VPS11-202ENST00000526829 ZNF777Q9ULD5 760 aaPredicted RBP16.91■□□□□ 0.3
VPS11-202ENST00000526829 CNTLNQ9NXG0 1405 aa16.91■□□□□ 0.3
VPS11-202ENST00000526829 CERKQ8TCT0 537 aa16.9■□□□□ 0.3
VPS11-202ENST00000526829 INO80Q9ULG1 1556 aaPredicted RBP16.9■□□□□ 0.3
VPS11-202ENST00000526829 SPAG9O60271 1321 aaKnown RBP16.9■□□□□ 0.3
VPS11-202ENST00000526829 SCAF1Q9H7N4 1312 aaKnown RBP16.9■□□□□ 0.3
VPS11-202ENST00000526829 MROH2AA6NES4 1674 aa16.89■□□□□ 0.3
VPS11-202ENST00000526829 ATP7AQ04656 1500 aa16.89■□□□□ 0.29
VPS11-202ENST00000526829 HNRNPMP52272 730 aaKnown RBP eCLIP16.89■□□□□ 0.29
VPS11-202ENST00000526829 CCNB3Q8WWL7 1395 aa16.89■□□□□ 0.29
VPS11-202ENST00000526829 ZEB1P37275 1124 aaPredicted RBP16.88■□□□□ 0.29
VPS11-202ENST00000526829 TRIM26Q12899 539 aaPredicted RBP16.88■□□□□ 0.29
VPS11-202ENST00000526829 ESF1Q9H501 851 aaKnown RBP16.88■□□□□ 0.29
VPS11-202ENST00000526829 CFDP1Q9UEE9 299 aaPredicted RBP16.88■□□□□ 0.29
VPS11-202ENST00000526829 PLXNC1O60486 1568 aa16.88■□□□□ 0.29
VPS11-202ENST00000526829 DMRT2Q9Y5R5 561 aa16.88■□□□□ 0.29
VPS11-202ENST00000526829 MTUS2Q5JR59 1369 aa16.88■□□□□ 0.29
VPS11-202ENST00000526829 TIAM1Q13009 1591 aa16.86■□□□□ 0.29
VPS11-202ENST00000526829 SUPT6HQ7KZ85 1726 aaKnown RBP16.86■□□□□ 0.29
VPS11-202ENST00000526829 EHBP1L1Q8N3D4 1523 aa16.86■□□□□ 0.29
VPS11-202ENST00000526829 PTPRTO14522 1441 aa16.84■□□□□ 0.29
VPS11-202ENST00000526829 NPATQ14207 1427 aa16.84■□□□□ 0.29
VPS11-202ENST00000526829 A2MP01023 1474 aa16.84■□□□□ 0.29
VPS11-202ENST00000526829 CEP162Q5TB80 1403 aa16.83■□□□□ 0.28
VPS11-202ENST00000526829 ADGBQ8N7X0 1667 aa16.83■□□□□ 0.28
VPS11-202ENST00000526829 MBD5Q9P267 1494 aa16.82■□□□□ 0.28
VPS11-202ENST00000526829 ZMYM3Q14202 1370 aa16.82■□□□□ 0.28
VPS11-202ENST00000526829 CLTCQ00610 1675 aaKnown RBP16.81■□□□□ 0.28
VPS11-202ENST00000526829 NCOA1Q15788 1441 aa16.81■□□□□ 0.28
VPS11-202ENST00000526829 NCBP3Q53F19 620 aaKnown RBP16.79■□□□□ 0.28
VPS11-202ENST00000526829 ZNF644Q9H582 1327 aaPredicted RBP16.79■□□□□ 0.28
VPS11-202ENST00000526829 RTEL1-TNFRSF6BF6WH68 1400 aa16.78■□□□□ 0.28
VPS11-202ENST00000526829 ZNF142P52746 1687 aaPredicted RBP16.77■□□□□ 0.27
VPS11-202ENST00000526829 PTPRKQ15262 1439 aa16.76■□□□□ 0.27
VPS11-202ENST00000526829 CAMSAP1Q5T5Y3 1602 aa16.76■□□□□ 0.27
VPS11-202ENST00000526829 PPP6R1Q9UPN7 881 aa16.76■□□□□ 0.27
VPS11-202ENST00000526829 LTBP4Q8N2S1 1624 aa16.76■□□□□ 0.27
VPS11-202ENST00000526829 MYO3AQ8NEV4 1616 aa16.76■□□□□ 0.27
VPS11-202ENST00000526829 NCOA2Q15596 1464 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms