RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-225	ENST00000524141	SMG6	Q86US8	1419 aa	Known RBP	13.97	□□□□□ -0.17
SPIDR-225	ENST00000524141	TEX14	Q8IWB6	1497 aa		13.97	□□□□□ -0.17
SPIDR-225	ENST00000524141	SPATA31E1	Q6ZUB1	1445 aa		13.96	□□□□□ -0.17
SPIDR-225	ENST00000524141	C11orf95	C9JLR9	678 aa	Predicted RBP	13.96	□□□□□ -0.17
SPIDR-225	ENST00000524141	NOP58	Q9Y2X3	529 aa	Known RBP	13.96	□□□□□ -0.17
SPIDR-225	ENST00000524141	ROCK1	Q13464	1354 aa		13.96	□□□□□ -0.17
SPIDR-225	ENST00000524141	ANKRD30B	Q9BXX2	1392 aa		13.96	□□□□□ -0.18
SPIDR-225	ENST00000524141	NES	P48681	1621 aa		13.95	□□□□□ -0.18
SPIDR-225	ENST00000524141	LAMC3	Q9Y6N6	1575 aa		13.95	□□□□□ -0.18
SPIDR-225	ENST00000524141	KIF7	Q2M1P5	1343 aa		13.94	□□□□□ -0.18
SPIDR-225	ENST00000524141	EPRS	P07814	1512 aa	Known RBP	13.94	□□□□□ -0.18
SPIDR-225	ENST00000524141	URB2	Q14146	1524 aa	Known RBP	13.94	□□□□□ -0.18
SPIDR-225	ENST00000524141	DEK	P35659	375 aa	Known RBP	13.93	□□□□□ -0.18
SPIDR-225	ENST00000524141	TDRD9	Q8NDG6	1382 aa	Known RBP	13.92	□□□□□ -0.18
SPIDR-225	ENST00000524141	RNF123	Q5XPI4	1314 aa		13.91	□□□□□ -0.18
SPIDR-225	ENST00000524141	NBPF8	Q3BBV2	869 aa		13.91	□□□□□ -0.18
SPIDR-225	ENST00000524141	NUDC	Q9Y266	331 aa		13.91	□□□□□ -0.18
SPIDR-225	ENST00000524141	DNMT1	P26358	1616 aa	Known RBP	13.9	□□□□□ -0.18
SPIDR-225	ENST00000524141	DAPK1	P53355	1430 aa		13.9	□□□□□ -0.18
SPIDR-225	ENST00000524141	ANP32A	P39687	249 aa	Known RBP	13.89	□□□□□ -0.19
SPIDR-225	ENST00000524141	IQGAP2	Q13576	1575 aa		13.89	□□□□□ -0.19
SPIDR-225	ENST00000524141	WDR62	O43379	1518 aa		13.89	□□□□□ -0.19
SPIDR-225	ENST00000524141	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.88	□□□□□ -0.19
SPIDR-225	ENST00000524141	FOXD1	Q16676	465 aa		13.88	□□□□□ -0.19
SPIDR-225	ENST00000524141	CCDC136	Q96JN2	1154 aa		13.88	□□□□□ -0.19
SPIDR-225	ENST00000524141	DHX29	Q7Z478	1369 aa	Known RBP	13.87	□□□□□ -0.19
SPIDR-225	ENST00000524141	CDK13	Q14004	1512 aa	Known RBP	13.87	□□□□□ -0.19
SPIDR-225	ENST00000524141	IPO9	Q96P70	1041 aa	Known RBP	13.85	□□□□□ -0.19
SPIDR-225	ENST00000524141	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.85	□□□□□ -0.19
SPIDR-225	ENST00000524141	MBD5	Q9P267	1494 aa		13.85	□□□□□ -0.19
SPIDR-225	ENST00000524141	ABCC5	O15440	1437 aa		13.84	□□□□□ -0.19
SPIDR-225	ENST00000524141	KIF14	Q15058	1648 aa		13.84	□□□□□ -0.19
SPIDR-225	ENST00000524141	ROCK2	O75116	1388 aa	Known RBP	13.83	□□□□□ -0.19
SPIDR-225	ENST00000524141	PAK3	O75914	559 aa	Predicted RBP	13.83	□□□□□ -0.2
SPIDR-225	ENST00000524141	PBRM1	Q86U86	1689 aa		13.82	□□□□□ -0.2
SPIDR-225	ENST00000524141	TARBP1	Q13395	1621 aa	Known RBP	13.82	□□□□□ -0.2
SPIDR-225	ENST00000524141	USP47	Q96K76	1375 aa		13.82	□□□□□ -0.2
SPIDR-225	ENST00000524141	PDS5B	Q9NTI5	1447 aa		13.82	□□□□□ -0.2
SPIDR-225	ENST00000524141	NBR1	Q14596	966 aa		13.82	□□□□□ -0.2
SPIDR-225	ENST00000524141	RTL5	Q5HYW3	569 aa	Predicted RBP	13.81	□□□□□ -0.2
SPIDR-225	ENST00000524141	BCORL1	Q5H9F3	1711 aa		13.81	□□□□□ -0.2
SPIDR-225	ENST00000524141	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.81	□□□□□ -0.2
SPIDR-225	ENST00000524141	KDM5C	P41229	1560 aa		13.8	□□□□□ -0.2
SPIDR-225	ENST00000524141	PZP	P20742	1482 aa		13.8	□□□□□ -0.2
SPIDR-225	ENST00000524141	ADGB	Q8N7X0	1667 aa		13.8	□□□□□ -0.2
SPIDR-225	ENST00000524141	KTN1	Q86UP2	1357 aa	Known RBP	13.79	□□□□□ -0.2
SPIDR-225	ENST00000524141	ADAMTS12	P58397	1594 aa		13.79	□□□□□ -0.2
SPIDR-225	ENST00000524141	KIAA1107	Q9UPP5	1409 aa		13.78	□□□□□ -0.2
SPIDR-225	ENST00000524141	PNISR	Q8TF01	805 aa	Known RBP	13.77	□□□□□ -0.2
SPIDR-225	ENST00000524141	TMC1	Q8TDI8	760 aa		13.77	□□□□□ -0.21
SPIDR-225	ENST00000524141	ITSN2	Q9NZM3	1697 aa		13.76	□□□□□ -0.21
SPIDR-225	ENST00000524141	KIF15	Q9NS87	1388 aa		13.76	□□□□□ -0.21
SPIDR-225	ENST00000524141	RALGAPB	Q86X10	1494 aa		13.75	□□□□□ -0.21
SPIDR-225	ENST00000524141	UHRF1BP1	Q6BDS2	1440 aa		13.75	□□□□□ -0.21
SPIDR-225	ENST00000524141	BRD4	O60885	1362 aa	Predicted RBP	13.75	□□□□□ -0.21
SPIDR-225	ENST00000524141	LRPPRC	P42704	1394 aa	Known RBP	13.75	□□□□□ -0.21
SPIDR-225	ENST00000524141	ADGRL2	O95490	1459 aa		13.74	□□□□□ -0.21
SPIDR-225	ENST00000524141	POLR3GL	Q9BT43	218 aa		13.73	□□□□□ -0.21
SPIDR-225	ENST00000524141	ARHGEF12	Q9NZN5	1544 aa		13.73	□□□□□ -0.21
SPIDR-225	ENST00000524141	TCERG1	O14776	1098 aa	Known RBP	13.73	□□□□□ -0.21
SPIDR-225	ENST00000524141	CROCC2	H7BZ55	1655 aa		13.73	□□□□□ -0.21
SPIDR-225	ENST00000524141	CAMSAP2	Q08AD1	1489 aa		13.73	□□□□□ -0.21
SPIDR-225	ENST00000524141	KIAA0556	O60303	1618 aa		13.72	□□□□□ -0.21
SPIDR-225	ENST00000524141	RAPGEF6	Q8TEU7	1601 aa		13.72	□□□□□ -0.21
SPIDR-225	ENST00000524141	NUP153	P49790	1475 aa	Known RBP	13.72	□□□□□ -0.21
SPIDR-225	ENST00000524141	ZNF644	Q9H582	1327 aa	Predicted RBP	13.72	□□□□□ -0.21
SPIDR-225	ENST00000524141	RALBP1	Q15311	655 aa		13.71	□□□□□ -0.21
SPIDR-225	ENST00000524141	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.71	□□□□□ -0.21
SPIDR-225	ENST00000524141	RRP1	P56182	461 aa	Known RBP	13.71	□□□□□ -0.22
SPIDR-225	ENST00000524141	ARID3C	A6NKF2	412 aa		13.7	□□□□□ -0.22
SPIDR-225	ENST00000524141	ZNF326	Q5BKZ1	582 aa	Known RBP	13.7	□□□□□ -0.22
SPIDR-225	ENST00000524141		E9PCH4	1651 aa		13.69	□□□□□ -0.22
SPIDR-225	ENST00000524141	USP35	Q9P2H5	1018 aa		13.69	□□□□□ -0.22
SPIDR-225	ENST00000524141	TRO	Q12816	1431 aa	Predicted RBP	13.69	□□□□□ -0.22
SPIDR-225	ENST00000524141	ANKRD30A	Q9BXX3	1397 aa		13.69	□□□□□ -0.22
SPIDR-225	ENST00000524141	MS4A1	P11836	297 aa		13.69	□□□□□ -0.22
SPIDR-225	ENST00000524141	PDE3B	Q13370	1112 aa		13.69	□□□□□ -0.22
SPIDR-225	ENST00000524141	CNGB1	Q14028	1251 aa	Predicted RBP	13.69	□□□□□ -0.22
SPIDR-225	ENST00000524141	PKD2	Q13563	968 aa		13.68	□□□□□ -0.22
SPIDR-225	ENST00000524141	KIAA0586	Q9BVV6	1533 aa		13.68	□□□□□ -0.22
SPIDR-225	ENST00000524141	DISP1	Q96F81	1524 aa		13.68	□□□□□ -0.22
SPIDR-225	ENST00000524141	ADCY10	Q96PN6	1610 aa		13.67	□□□□□ -0.22
SPIDR-225	ENST00000524141	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.67	□□□□□ -0.22
SPIDR-225	ENST00000524141	CARD11	Q9BXL7	1154 aa		13.67	□□□□□ -0.22
SPIDR-225	ENST00000524141	RCAN3	Q9UKA8	241 aa		13.67	□□□□□ -0.22
SPIDR-225	ENST00000524141	ANKRD50	Q9ULJ7	1429 aa		13.65	□□□□□ -0.22
SPIDR-225	ENST00000524141	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.65	□□□□□ -0.22
SPIDR-225	ENST00000524141	KDM5D	Q9BY66	1539 aa		13.64	□□□□□ -0.23
SPIDR-225	ENST00000524141	PDE4A	P27815	886 aa		13.64	□□□□□ -0.23
SPIDR-225	ENST00000524141	EXOC6	Q8TAG9	804 aa		13.64	□□□□□ -0.23
SPIDR-225	ENST00000524141	NLRP13	Q86W25	1043 aa		13.63	□□□□□ -0.23
SPIDR-225	ENST00000524141	BACH2	Q9BYV9	841 aa		13.63	□□□□□ -0.23
SPIDR-225	ENST00000524141	SHANK2	Q9UPX8	1470 aa		13.63	□□□□□ -0.23
SPIDR-225	ENST00000524141	PPM1G	O15355	546 aa	Predicted RBP	13.63	□□□□□ -0.23
SPIDR-225	ENST00000524141	ZMYM4	Q5VZL5	1548 aa		13.63	□□□□□ -0.23
SPIDR-225	ENST00000524141	INSR	P06213	1382 aa		13.62	□□□□□ -0.23
SPIDR-225	ENST00000524141	PRG4	Q92954	1404 aa	Predicted RBP	13.62	□□□□□ -0.23
SPIDR-225	ENST00000524141	NPM2	Q86SE8	214 aa	Known RBP	13.61	□□□□□ -0.23
SPIDR-225	ENST00000524141	CEP170	Q5SW79	1584 aa		13.61	□□□□□ -0.23
SPIDR-225	ENST00000524141	ST20-MTHFS	A0A0A6YYL1	179 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 145.3 ms