RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 PREX2Q70Z35 1606 aa20.02■□□□□ 0.8
CPNE3-205ENST00000522240 CCNB3Q8WWL7 1395 aa20.02■□□□□ 0.8
CPNE3-205ENST00000522240 ABCA9Q8IUA7 1624 aa20.02■□□□□ 0.79
CPNE3-205ENST00000522240 MYO5CQ9NQX4 1742 aa20■□□□□ 0.79
CPNE3-205ENST00000522240 GPATCH8Q9UKJ3 1502 aaKnown RBP20■□□□□ 0.79
CPNE3-205ENST00000522240 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.99■□□□□ 0.79
CPNE3-205ENST00000522240 TCOF1Q13428 1488 aaKnown RBP19.99■□□□□ 0.79
CPNE3-205ENST00000522240 PTPN23Q9H3S7 1636 aa19.98■□□□□ 0.79
CPNE3-205ENST00000522240 ARAP3Q8WWN8 1544 aa19.98■□□□□ 0.79
CPNE3-205ENST00000522240 FAM69CQ0P6D2 419 aa19.97■□□□□ 0.79
CPNE3-205ENST00000522240 SLC4A1APQ9BWU0 796 aaKnown RBP19.96■□□□□ 0.79
CPNE3-205ENST00000522240 GLI2P10070 1586 aa19.95■□□□□ 0.78
CPNE3-205ENST00000522240 CDC42BPBQ9Y5S2 1711 aa19.94■□□□□ 0.78
CPNE3-205ENST00000522240 DIP2BQ9P265 1576 aa19.93■□□□□ 0.78
CPNE3-205ENST00000522240 PLCH2O75038 1416 aa19.91■□□□□ 0.78
CPNE3-205ENST00000522240 KCNH8Q96L42 1107 aa19.9■□□□□ 0.78
CPNE3-205ENST00000522240 CAMSAP2Q08AD1 1489 aa19.9■□□□□ 0.78
CPNE3-205ENST00000522240 ARHGAP5Q13017 1502 aa19.89■□□□□ 0.77
CPNE3-205ENST00000522240 MAP3K4Q9Y6R4 1608 aa19.88■□□□□ 0.77
CPNE3-205ENST00000522240 CFDP1Q9UEE9 299 aaPredicted RBP19.87■□□□□ 0.77
CPNE3-205ENST00000522240 SAMD9LQ8IVG5 1584 aa19.87■□□□□ 0.77
CPNE3-205ENST00000522240 CFAP74Q9C0B2 1584 aa19.87■□□□□ 0.77
CPNE3-205ENST00000522240 MSH5O43196 834 aa19.86■□□□□ 0.77
CPNE3-205ENST00000522240 DNMT1P26358 1616 aaKnown RBP19.85■□□□□ 0.77
CPNE3-205ENST00000522240 PLEKHH2Q8IVE3 1493 aa19.85■□□□□ 0.77
CPNE3-205ENST00000522240 PCGF6Q9BYE7 350 aa19.84■□□□□ 0.77
CPNE3-205ENST00000522240 SCAF1Q9H7N4 1312 aaKnown RBP19.83■□□□□ 0.77
CPNE3-205ENST00000522240 ARHGEF5Q12774 1597 aa19.83■□□□□ 0.76
CPNE3-205ENST00000522240 ABCC1P33527 1531 aa19.82■□□□□ 0.76
CPNE3-205ENST00000522240 FAM50AQ14320 339 aaKnown RBP19.82■□□□□ 0.76
CPNE3-205ENST00000522240 CD109Q6YHK3 1445 aa19.82■□□□□ 0.76
CPNE3-205ENST00000522240 CROCC2H7BZ55 1655 aa19.81■□□□□ 0.76
CPNE3-205ENST00000522240 NPM3O75607 178 aaKnown RBP19.81■□□□□ 0.76
CPNE3-205ENST00000522240 FANCAO15360 1455 aa19.79■□□□□ 0.76
CPNE3-205ENST00000522240 KIAA1107Q9UPP5 1409 aa19.79■□□□□ 0.76
CPNE3-205ENST00000522240 SYCP2Q9BX26 1530 aa19.78■□□□□ 0.76
CPNE3-205ENST00000522240 KDM6BO15054 1643 aa19.78■□□□□ 0.76
CPNE3-205ENST00000522240 DAPK1P53355 1430 aa19.77■□□□□ 0.76
CPNE3-205ENST00000522240 EFCAB2Q5VUJ9 269 aa19.77■□□□□ 0.76
CPNE3-205ENST00000522240 SHANK2Q9UPX8 1470 aa19.77■□□□□ 0.76
CPNE3-205ENST00000522240 NEO1Q92859 1461 aa19.76■□□□□ 0.75
CPNE3-205ENST00000522240 ZNF644Q9H582 1327 aaPredicted RBP19.76■□□□□ 0.75
CPNE3-205ENST00000522240 CCDC141Q6ZP82 1450 aa19.75■□□□□ 0.75
CPNE3-205ENST00000522240 MBD5Q9P267 1494 aa19.75■□□□□ 0.75
CPNE3-205ENST00000522240 ABCC5O15440 1437 aa19.74■□□□□ 0.75
CPNE3-205ENST00000522240 PPRC1Q5VV67 1664 aaKnown RBP19.74■□□□□ 0.75
CPNE3-205ENST00000522240 ADGBQ8N7X0 1667 aa19.73■□□□□ 0.75
CPNE3-205ENST00000522240 ZNF777Q9ULD5 760 aaPredicted RBP19.73■□□□□ 0.75
CPNE3-205ENST00000522240 AKNAQ7Z591 1439 aa19.73■□□□□ 0.75
CPNE3-205ENST00000522240 CNKSR2Q8WXI2 1034 aa19.72■□□□□ 0.75
CPNE3-205ENST00000522240 MAST1Q9Y2H9 1570 aa19.72■□□□□ 0.75
CPNE3-205ENST00000522240 TEX14Q8IWB6 1497 aa19.72■□□□□ 0.75
CPNE3-205ENST00000522240 PTPRKQ15262 1439 aa19.71■□□□□ 0.75
CPNE3-205ENST00000522240 ADGRL1O94910 1474 aa19.71■□□□□ 0.75
CPNE3-205ENST00000522240 ADGRL2O95490 1459 aa19.7■□□□□ 0.74
CPNE3-205ENST00000522240 ARHGEF12Q9NZN5 1544 aa19.7■□□□□ 0.74
CPNE3-205ENST00000522240 TSPOAP1O95153 1857 aa19.69■□□□□ 0.74
CPNE3-205ENST00000522240 KDM4FA0A1W2PPD8 638 aa19.69■□□□□ 0.74
CPNE3-205ENST00000522240 RSPH4AQ5TD94 716 aa19.69■□□□□ 0.74
CPNE3-205ENST00000522240 GCC2Q8IWJ2 1684 aa19.68■□□□□ 0.74
CPNE3-205ENST00000522240 ROCK1Q13464 1354 aa19.68■□□□□ 0.74
CPNE3-205ENST00000522240 ITGAEP38570 1179 aa19.66■□□□□ 0.74
CPNE3-205ENST00000522240 HFM1A2PYH4 1435 aa19.66■□□□□ 0.74
CPNE3-205ENST00000522240 C9orf84Q5VXU9 1444 aa19.66■□□□□ 0.74
CPNE3-205ENST00000522240 SCAPERQ9BY12 1400 aa19.64■□□□□ 0.73
CPNE3-205ENST00000522240 PLXNC1O60486 1568 aa19.64■□□□□ 0.73
CPNE3-205ENST00000522240 KDM5CP41229 1560 aa19.63■□□□□ 0.73
CPNE3-205ENST00000522240 ZNF518AQ6AHZ1 1483 aa19.63■□□□□ 0.73
CPNE3-205ENST00000522240 POGZQ7Z3K3 1410 aa19.63■□□□□ 0.73
CPNE3-205ENST00000522240 TRAPPC8Q9Y2L5 1435 aa19.63■□□□□ 0.73
CPNE3-205ENST00000522240 HNRNPMP52272 730 aaKnown RBP eCLIP19.63■□□□□ 0.73
CPNE3-205ENST00000522240 INO80Q9ULG1 1556 aaPredicted RBP19.62■□□□□ 0.73
CPNE3-205ENST00000522240 ZFYVE16Q7Z3T8 1539 aa19.61■□□□□ 0.73
CPNE3-205ENST00000522240 RICTORQ6R327 1708 aa19.6■□□□□ 0.73
CPNE3-205ENST00000522240 DENND4BO75064 1496 aaPredicted RBP19.6■□□□□ 0.73
CPNE3-205ENST00000522240 RTEL1-TNFRSF6BF6WH68 1400 aa19.59■□□□□ 0.73
CPNE3-205ENST00000522240 NAIPQ13075 1403 aa19.59■□□□□ 0.73
CPNE3-205ENST00000522240 SETD5Q9C0A6 1442 aa19.59■□□□□ 0.73
CPNE3-205ENST00000522240 ANKRD30AQ9BXX3 1397 aa19.59■□□□□ 0.73
CPNE3-205ENST00000522240 NCOA1Q15788 1441 aa19.59■□□□□ 0.73
CPNE3-205ENST00000522240 TSPY4P0CV99 314 aa19.58■□□□□ 0.72
CPNE3-205ENST00000522240 TSPY10P0CW01 314 aa19.58■□□□□ 0.72
CPNE3-205ENST00000522240 ATP7AQ04656 1500 aa19.57■□□□□ 0.72
CPNE3-205ENST00000522240 FRMPD1Q5SYB0 1578 aa19.57■□□□□ 0.72
CPNE3-205ENST00000522240 HECW2Q9P2P5 1572 aa19.57■□□□□ 0.72
CPNE3-205ENST00000522240 ZMYM4Q5VZL5 1548 aa19.56■□□□□ 0.72
CPNE3-205ENST00000522240 CHIC2Q9UKJ5 165 aa19.54■□□□□ 0.72
CPNE3-205ENST00000522240 RAB3GAP2Q9H2M9 1393 aa19.54■□□□□ 0.72
CPNE3-205ENST00000522240 MLH3Q9UHC1 1453 aa19.54■□□□□ 0.72
CPNE3-205ENST00000522240 SPAG9O60271 1321 aaKnown RBP19.52■□□□□ 0.72
CPNE3-205ENST00000522240 KIDINS220Q9ULH0 1771 aa19.52■□□□□ 0.72
CPNE3-205ENST00000522240 KIF15Q9NS87 1388 aa19.52■□□□□ 0.72
CPNE3-205ENST00000522240 DUOX2Q9NRD8 1548 aa19.51■□□□□ 0.71
CPNE3-205ENST00000522240 HRCP23327 699 aa19.51■□□□□ 0.71
CPNE3-205ENST00000522240 COL17A1Q9UMD9 1497 aaPredicted RBP19.5■□□□□ 0.71
CPNE3-205ENST00000522240 AFAP1Q8N556 730 aa19.49■□□□□ 0.71
CPNE3-205ENST00000522240 RRP7BPQ9NSQ0 103 aa19.49■□□□□ 0.71
CPNE3-205ENST00000522240 ACIN1Q9UKV3 1341 aaKnown RBP19.48■□□□□ 0.71
CPNE3-205ENST00000522240 MAGI2Q86UL8 1455 aa19.48■□□□□ 0.71
CPNE3-205ENST00000522240 ERBINQ96RT1 1412 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms