RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 LSM11P83369 360 aaKnown RBP eCLIP7.81□□□□□ -1.16
CPNE3-204ENST00000517862 GOLGA2Q08379 1002 aa7.81□□□□□ -1.16
CPNE3-204ENST00000517862 Q6ZNB5 142 aa7.81□□□□□ -1.16
CPNE3-204ENST00000517862 NESP48681 1621 aa7.81□□□□□ -1.16
CPNE3-204ENST00000517862 SMARCA2P51531 1590 aa7.8□□□□□ -1.16
CPNE3-204ENST00000517862 G3V3G9 751 aa7.79□□□□□ -1.16
CPNE3-204ENST00000517862 MKRN3Q13064 507 aaKnown RBP7.79□□□□□ -1.16
CPNE3-204ENST00000517862 DCAF8Q5TAQ9 597 aa7.79□□□□□ -1.16
CPNE3-204ENST00000517862 ARAP1Q96P48 1450 aa7.78□□□□□ -1.16
CPNE3-204ENST00000517862 SPATA31D1Q6ZQQ2 1576 aa7.77□□□□□ -1.17
CPNE3-204ENST00000517862 ZSWIM6Q9HCJ5 1215 aa7.75□□□□□ -1.17
CPNE3-204ENST00000517862 MIER1Q8N108 512 aa7.74□□□□□ -1.17
CPNE3-204ENST00000517862 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.74□□□□□ -1.17
CPNE3-204ENST00000517862 SYNJ2O15056 1496 aa7.72□□□□□ -1.17
CPNE3-204ENST00000517862 FAM212AQ96EL1 285 aa7.71□□□□□ -1.18
CPNE3-204ENST00000517862 KIF21AQ7Z4S6 1674 aa7.68□□□□□ -1.18
CPNE3-204ENST00000517862 BOLA1Q9Y3E2 137 aa7.66□□□□□ -1.18
CPNE3-204ENST00000517862 PBX2P40425 430 aa7.64□□□□□ -1.19
CPNE3-204ENST00000517862 IFFO2Q5TF58 517 aa7.63□□□□□ -1.19
CPNE3-204ENST00000517862 GPR153Q6NV75 609 aa7.63□□□□□ -1.19
CPNE3-204ENST00000517862 ZBTB47Q9UFB7 747 aaPredicted RBP7.63□□□□□ -1.19
CPNE3-204ENST00000517862 PCDHB8Q9UN66 801 aa7.63□□□□□ -1.19
CPNE3-204ENST00000517862 NUBP1P53384 320 aa7.62□□□□□ -1.19
CPNE3-204ENST00000517862 A0A0G2JS52 829 aa7.61□□□□□ -1.19
CPNE3-204ENST00000517862 ZNF316A6NFI3 1004 aaPredicted RBP7.6□□□□□ -1.19
CPNE3-204ENST00000517862 SCRIBQ14160 1630 aa7.6□□□□□ -1.19
CPNE3-204ENST00000517862 DPY19L2Q6NUT2 758 aa7.58□□□□□ -1.2
CPNE3-204ENST00000517862 PYGBP11216 843 aa7.57□□□□□ -1.2
CPNE3-204ENST00000517862 PLCD3Q8N3E9 789 aa7.57□□□□□ -1.2
CPNE3-204ENST00000517862 WDR62O43379 1518 aa7.56□□□□□ -1.2
CPNE3-204ENST00000517862 MRC2Q9UBG0 1479 aa7.55□□□□□ -1.2
CPNE3-204ENST00000517862 PDS5BQ9NTI5 1447 aa7.54□□□□□ -1.2
CPNE3-204ENST00000517862 MYO15BQ96JP2 1530 aa7.54□□□□□ -1.2
CPNE3-204ENST00000517862 TRAF7Q6Q0C0 670 aa7.54□□□□□ -1.2
CPNE3-204ENST00000517862 KCTD12Q96CX2 325 aaKnown RBP7.54□□□□□ -1.2
CPNE3-204ENST00000517862 LAMC3Q9Y6N6 1575 aa7.54□□□□□ -1.2
CPNE3-204ENST00000517862 LAPTM4AQ15012 233 aa7.53□□□□□ -1.2
CPNE3-204ENST00000517862 ARSIQ5FYB1 569 aa7.53□□□□□ -1.2
CPNE3-204ENST00000517862 ADGRD1Q6QNK2 874 aa7.53□□□□□ -1.2
CPNE3-204ENST00000517862 ADGRL1O94910 1474 aa7.53□□□□□ -1.2
CPNE3-204ENST00000517862 LOC100996750A0A140TA64 210 aa7.52□□□□□ -1.21
CPNE3-204ENST00000517862 KRTAP4-6Q9BYQ5 205 aa7.52□□□□□ -1.21
CPNE3-204ENST00000517862 RSF1Q96T23 1441 aaPredicted RBP7.52□□□□□ -1.21
CPNE3-204ENST00000517862 AXIN2Q9Y2T1 843 aa7.5□□□□□ -1.21
CPNE3-204ENST00000517862 ZNF467Q7Z7K2 595 aaPredicted RBP7.49□□□□□ -1.21
CPNE3-204ENST00000517862 NCAPD3P42695 1498 aa7.49□□□□□ -1.21
CPNE3-204ENST00000517862 PROM2Q8N271 834 aa7.48□□□□□ -1.21
CPNE3-204ENST00000517862 STAC3Q96MF2 364 aa7.48□□□□□ -1.21
CPNE3-204ENST00000517862 CERKQ8TCT0 537 aa7.46□□□□□ -1.22
CPNE3-204ENST00000517862 KIF13AQ9H1H9 1805 aa7.45□□□□□ -1.22
CPNE3-204ENST00000517862 PTPN5P54829 565 aa7.45□□□□□ -1.22
CPNE3-204ENST00000517862 ZNF787Q6DD87 383 aa7.45□□□□□ -1.22
CPNE3-204ENST00000517862 POTEEQ6S8J3 1075 aa7.45□□□□□ -1.22
CPNE3-204ENST00000517862 LCE2BO14633 110 aa7.44□□□□□ -1.22
CPNE3-204ENST00000517862 ZNF775Q96BV0 537 aaPredicted RBP7.44□□□□□ -1.22
CPNE3-204ENST00000517862 KDM6BO15054 1643 aa7.44□□□□□ -1.22
CPNE3-204ENST00000517862 PSEN1P49768 467 aa7.42□□□□□ -1.22
CPNE3-204ENST00000517862 KHSRPQ92945 711 aaKnown RBP eCLIP7.42□□□□□ -1.22
CPNE3-204ENST00000517862 TK2O00142 265 aa7.41□□□□□ -1.22
CPNE3-204ENST00000517862 HRO43593 1189 aa7.4□□□□□ -1.22
CPNE3-204ENST00000517862 CHD1O14646 1710 aa7.4□□□□□ -1.23
CPNE3-204ENST00000517862 ARHGAP33O14559 1287 aa7.39□□□□□ -1.23
CPNE3-204ENST00000517862 GFRA3O60609 400 aa7.36□□□□□ -1.23
CPNE3-204ENST00000517862 TMEM92Q6UXU6 159 aa7.36□□□□□ -1.23
CPNE3-204ENST00000517862 CABP2Q9NPB3 220 aa7.35□□□□□ -1.23
CPNE3-204ENST00000517862 HMGXB3Q12766 1538 aa7.32□□□□□ -1.24
CPNE3-204ENST00000517862 NUDT7P0C024 238 aa7.32□□□□□ -1.24
CPNE3-204ENST00000517862 LHX6Q9UPM6 363 aa7.32□□□□□ -1.24
CPNE3-204ENST00000517862 ATAD2BQ9ULI0 1458 aa7.3□□□□□ -1.24
CPNE3-204ENST00000517862 MICALL2Q8IY33 904 aa7.3□□□□□ -1.24
CPNE3-204ENST00000517862 ZNF608Q9ULD9 1512 aaPredicted RBP7.29□□□□□ -1.24
CPNE3-204ENST00000517862 FAM69CQ0P6D2 419 aa7.29□□□□□ -1.24
CPNE3-204ENST00000517862 GAPVD1Q14C86 1478 aa7.29□□□□□ -1.24
CPNE3-204ENST00000517862 PDAP1Q13442 181 aaKnown RBP7.28□□□□□ -1.24
CPNE3-204ENST00000517862 CEP164Q9UPV0 1460 aa7.28□□□□□ -1.24
CPNE3-204ENST00000517862 PSDA5PKW4 1024 aaPredicted RBP7.26□□□□□ -1.25
CPNE3-204ENST00000517862 NRG2O14511 850 aaPredicted RBP7.26□□□□□ -1.25
CPNE3-204ENST00000517862 DMRTA1Q5VZB9 504 aa7.26□□□□□ -1.25
CPNE3-204ENST00000517862 THSD4Q6ZMP0 1018 aa7.25□□□□□ -1.25
CPNE3-204ENST00000517862 TSPOAP1O95153 1857 aa7.24□□□□□ -1.25
CPNE3-204ENST00000517862 SMARCA4P51532 1647 aa7.23□□□□□ -1.25
CPNE3-204ENST00000517862 TOP2BQ02880 1626 aa7.23□□□□□ -1.25
CPNE3-204ENST00000517862 RTN4Q9NQC3 1192 aaKnown RBP7.23□□□□□ -1.25
CPNE3-204ENST00000517862 CLASP1Q7Z460 1538 aa7.22□□□□□ -1.25
CPNE3-204ENST00000517862 CADPSQ9ULU8 1353 aa7.22□□□□□ -1.25
CPNE3-204ENST00000517862 PSEN2P49810 448 aa7.22□□□□□ -1.25
CPNE3-204ENST00000517862 STK17AQ9UEE5 414 aa7.22□□□□□ -1.25
CPNE3-204ENST00000517862 GSE1Q14687 1217 aa7.2□□□□□ -1.26
CPNE3-204ENST00000517862 MED1Q15648 1581 aaPredicted RBP7.2□□□□□ -1.26
CPNE3-204ENST00000517862 SRCAPQ6ZRS2 3230 aa7.2□□□□□ -1.26
CPNE3-204ENST00000517862 ABCC10Q5T3U5 1492 aa7.19□□□□□ -1.26
CPNE3-204ENST00000517862 BAZ1BQ9UIG0 1483 aaKnown RBP7.19□□□□□ -1.26
CPNE3-204ENST00000517862 GOLGA8CPA6NN73 597 aa7.19□□□□□ -1.26
CPNE3-204ENST00000517862 SLC24A1O60721 1099 aa7.19□□□□□ -1.26
CPNE3-204ENST00000517862 ITGBL1O95965 494 aaPredicted RBP7.19□□□□□ -1.26
CPNE3-204ENST00000517862 KCNH8Q96L42 1107 aa7.19□□□□□ -1.26
CPNE3-204ENST00000517862 EIF4G3O43432 1585 aaKnown RBP7.19□□□□□ -1.26
CPNE3-204ENST00000517862 CHRM1P11229 460 aaPredicted RBP7.18□□□□□ -1.26
CPNE3-204ENST00000517862 PCF11O94913 1555 aaKnown RBP7.17□□□□□ -1.26
CPNE3-204ENST00000517862 IFT140Q96RY7 1462 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms