RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, human

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-222	ENST00000515609	PREX2	Q70Z35	1606 aa		14.03	□□□□□ -0.16
TPM3-222	ENST00000515609	CDC42BPA	Q5VT25	1732 aa		14.02	□□□□□ -0.16
TPM3-222	ENST00000515609	HFM1	A2PYH4	1435 aa		14.02	□□□□□ -0.16
TPM3-222	ENST00000515609	ASXL2	Q76L83	1435 aa		14.02	□□□□□ -0.16
TPM3-222	ENST00000515609	TSPY4	P0CV99	314 aa		14.02	□□□□□ -0.17
TPM3-222	ENST00000515609	TSPY10	P0CW01	314 aa		14.02	□□□□□ -0.17
TPM3-222	ENST00000515609	ZNF777	Q9ULD5	760 aa	Predicted RBP	14.02	□□□□□ -0.17
TPM3-222	ENST00000515609	MYO5C	Q9NQX4	1742 aa		14.01	□□□□□ -0.17
TPM3-222	ENST00000515609	DNMT1	P26358	1616 aa	Known RBP	14.01	□□□□□ -0.17
TPM3-222	ENST00000515609	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	14.01	□□□□□ -0.17
TPM3-222	ENST00000515609	PLCH2	O75038	1416 aa		14.01	□□□□□ -0.17
TPM3-222	ENST00000515609	RIMBP3C	A6NJZ7	1639 aa		14.01	□□□□□ -0.17
TPM3-222	ENST00000515609	RIMBP3B	A6NNM3	1639 aa		14.01	□□□□□ -0.17
TPM3-222	ENST00000515609	RIMBP3	Q9UFD9	1639 aa		14.01	□□□□□ -0.17
TPM3-222	ENST00000515609	ARHGAP5	Q13017	1502 aa		14	□□□□□ -0.17
TPM3-222	ENST00000515609	DAPK1	P53355	1430 aa		14	□□□□□ -0.17
TPM3-222	ENST00000515609	KIAA1107	Q9UPP5	1409 aa		13.99	□□□□□ -0.17
TPM3-222	ENST00000515609	CYB5RL	Q6IPT4	315 aa		13.99	□□□□□ -0.17
TPM3-222	ENST00000515609	RAB3GAP2	Q9H2M9	1393 aa		13.98	□□□□□ -0.17
TPM3-222	ENST00000515609	ARHGEF5	Q12774	1597 aa		13.98	□□□□□ -0.17
TPM3-222	ENST00000515609	SHANK2	Q9UPX8	1470 aa		13.98	□□□□□ -0.17
TPM3-222	ENST00000515609	ANKRD30A	Q9BXX3	1397 aa		13.97	□□□□□ -0.17
TPM3-222	ENST00000515609	TTC37	Q6PGP7	1564 aa		13.97	□□□□□ -0.17
TPM3-222	ENST00000515609	MAPKBP1	O60336	1514 aa		13.97	□□□□□ -0.17
TPM3-222	ENST00000515609	ABCC5	O15440	1437 aa		13.97	□□□□□ -0.17
TPM3-222	ENST00000515609	ABCA9	Q8IUA7	1624 aa		13.97	□□□□□ -0.17
TPM3-222	ENST00000515609	ZNF644	Q9H582	1327 aa	Predicted RBP	13.94	□□□□□ -0.18
TPM3-222	ENST00000515609	CCDC141	Q6ZP82	1450 aa		13.94	□□□□□ -0.18
TPM3-222	ENST00000515609	NAIP	Q13075	1403 aa		13.94	□□□□□ -0.18
TPM3-222	ENST00000515609	CDC42BPB	Q9Y5S2	1711 aa		13.94	□□□□□ -0.18
TPM3-222	ENST00000515609	ADGRL2	O95490	1459 aa		13.93	□□□□□ -0.18
TPM3-222	ENST00000515609	CFAP74	Q9C0B2	1584 aa		13.93	□□□□□ -0.18
TPM3-222	ENST00000515609	GCC2	Q8IWJ2	1684 aa		13.92	□□□□□ -0.18
TPM3-222	ENST00000515609	ADGB	Q8N7X0	1667 aa		13.92	□□□□□ -0.18
TPM3-222	ENST00000515609	PTPRK	Q15262	1439 aa		13.92	□□□□□ -0.18
TPM3-222	ENST00000515609	CHIC2	Q9UKJ5	165 aa		13.92	□□□□□ -0.18
TPM3-222	ENST00000515609	SAMD9L	Q8IVG5	1584 aa		13.91	□□□□□ -0.18
TPM3-222	ENST00000515609	CROCC2	H7BZ55	1655 aa		13.91	□□□□□ -0.18
TPM3-222	ENST00000515609	C9orf84	Q5VXU9	1444 aa		13.9	□□□□□ -0.18
TPM3-222	ENST00000515609	FANCA	O15360	1455 aa		13.9	□□□□□ -0.18
TPM3-222	ENST00000515609	NCOA1	Q15788	1441 aa		13.9	□□□□□ -0.19
TPM3-222	ENST00000515609	CD109	Q6YHK3	1445 aa		13.9	□□□□□ -0.19
TPM3-222	ENST00000515609	MBD5	Q9P267	1494 aa		13.89	□□□□□ -0.19
TPM3-222	ENST00000515609	DHX57	Q6P158	1386 aa	Known RBP	13.89	□□□□□ -0.19
TPM3-222	ENST00000515609	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
TPM3-222	ENST00000515609	RRP7BP	Q9NSQ0	103 aa		13.89	□□□□□ -0.19
TPM3-222	ENST00000515609	MAST1	Q9Y2H9	1570 aa		13.88	□□□□□ -0.19
TPM3-222	ENST00000515609	SYCP2	Q9BX26	1530 aa		13.87	□□□□□ -0.19
TPM3-222	ENST00000515609	GLI2	P10070	1586 aa		13.87	□□□□□ -0.19
TPM3-222	ENST00000515609	ABCC1	P33527	1531 aa		13.86	□□□□□ -0.19
TPM3-222	ENST00000515609	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.86	□□□□□ -0.19
TPM3-222	ENST00000515609	NEO1	Q92859	1461 aa		13.86	□□□□□ -0.19
TPM3-222	ENST00000515609	ANKRD50	Q9ULJ7	1429 aa		13.84	□□□□□ -0.19
TPM3-222	ENST00000515609	TRIM52	Q96A61	297 aa		13.84	□□□□□ -0.19
TPM3-222	ENST00000515609	TIMELESS	Q9UNS1	1208 aa		13.84	□□□□□ -0.19
TPM3-222	ENST00000515609	ADGRL1	O94910	1474 aa		13.84	□□□□□ -0.19
TPM3-222	ENST00000515609	KIF15	Q9NS87	1388 aa		13.83	□□□□□ -0.19
TPM3-222	ENST00000515609	SPAG9	O60271	1321 aa	Known RBP	13.83	□□□□□ -0.2
TPM3-222	ENST00000515609	PLXNC1	O60486	1568 aa		13.82	□□□□□ -0.2
TPM3-222	ENST00000515609	SCAPER	Q9BY12	1400 aa		13.81	□□□□□ -0.2
TPM3-222	ENST00000515609	ZNF518A	Q6AHZ1	1483 aa		13.81	□□□□□ -0.2
TPM3-222	ENST00000515609	TEX14	Q8IWB6	1497 aa		13.8	□□□□□ -0.2
TPM3-222	ENST00000515609	DUOX2	Q9NRD8	1548 aa		13.8	□□□□□ -0.2
TPM3-222	ENST00000515609	MAP3K4	Q9Y6R4	1608 aa		13.79	□□□□□ -0.2
TPM3-222	ENST00000515609	FAM69C	Q0P6D2	419 aa		13.78	□□□□□ -0.2
TPM3-222	ENST00000515609	ERBIN	Q96RT1	1412 aa		13.78	□□□□□ -0.2
TPM3-222	ENST00000515609	MYT1L	Q9UL68	1186 aa		13.77	□□□□□ -0.21
TPM3-222	ENST00000515609	ARHGEF12	Q9NZN5	1544 aa		13.76	□□□□□ -0.21
TPM3-222	ENST00000515609	TRAPPC8	Q9Y2L5	1435 aa		13.76	□□□□□ -0.21
TPM3-222	ENST00000515609	MPHOSPH9	Q99550	1183 aa		13.76	□□□□□ -0.21
TPM3-222	ENST00000515609	DIP2B	Q9P265	1576 aa		13.75	□□□□□ -0.21
TPM3-222	ENST00000515609	DENND4B	O75064	1496 aa	Predicted RBP	13.75	□□□□□ -0.21
TPM3-222	ENST00000515609	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.75	□□□□□ -0.21
TPM3-222	ENST00000515609	AFAP1	Q8N556	730 aa		13.74	□□□□□ -0.21
TPM3-222	ENST00000515609	ATP7A	Q04656	1500 aa		13.74	□□□□□ -0.21
TPM3-222	ENST00000515609	POGZ	Q7Z3K3	1410 aa		13.73	□□□□□ -0.21
TPM3-222	ENST00000515609	NUP155	O75694	1391 aa		13.72	□□□□□ -0.21
TPM3-222	ENST00000515609	ZFYVE16	Q7Z3T8	1539 aa		13.72	□□□□□ -0.21
TPM3-222	ENST00000515609	MLH3	Q9UHC1	1453 aa		13.72	□□□□□ -0.21
TPM3-222	ENST00000515609	INO80	Q9ULG1	1556 aa	Predicted RBP	13.71	□□□□□ -0.21
TPM3-222	ENST00000515609	KDM5D	Q9BY66	1539 aa		13.71	□□□□□ -0.21
TPM3-222	ENST00000515609	KDM5C	P41229	1560 aa		13.71	□□□□□ -0.22
TPM3-222	ENST00000515609	KANK1	Q14678	1352 aa		13.71	□□□□□ -0.22
TPM3-222	ENST00000515609	DHX29	Q7Z478	1369 aa	Known RBP	13.69	□□□□□ -0.22
TPM3-222	ENST00000515609	KDM6B	O15054	1643 aa		13.68	□□□□□ -0.22
TPM3-222	ENST00000515609	MAGI2	Q86UL8	1455 aa		13.68	□□□□□ -0.22
TPM3-222	ENST00000515609	HECW2	Q9P2P5	1572 aa		13.68	□□□□□ -0.22
TPM3-222	ENST00000515609	TONSL	Q96HA7	1378 aa		13.68	□□□□□ -0.22
TPM3-222	ENST00000515609	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.68	□□□□□ -0.22
TPM3-222	ENST00000515609	DNAJC5	Q9H3Z4	198 aa		13.67	□□□□□ -0.22
TPM3-222	ENST00000515609	UNC13B	O14795	1591 aa		13.66	□□□□□ -0.22
TPM3-222	ENST00000515609	NEUROD1	Q13562	356 aa		13.65	□□□□□ -0.22
TPM3-222	ENST00000515609	PZP	P20742	1482 aa		13.65	□□□□□ -0.22
TPM3-222	ENST00000515609	A2M	P01023	1474 aa		13.64	□□□□□ -0.23
TPM3-222	ENST00000515609	PKD2	Q13563	968 aa		13.64	□□□□□ -0.23
TPM3-222	ENST00000515609	FAM135A	Q9P2D6	1515 aa		13.63	□□□□□ -0.23
TPM3-222	ENST00000515609	ANKRD30B	Q9BXX2	1392 aa		13.62	□□□□□ -0.23
TPM3-222	ENST00000515609	IQGAP3	Q86VI3	1631 aa		13.62	□□□□□ -0.23
TPM3-222	ENST00000515609	ZMYM4	Q5VZL5	1548 aa		13.62	□□□□□ -0.23
TPM3-222	ENST00000515609	KIDINS220	Q9ULH0	1771 aa		13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms