RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, human

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM3-209	ENST00000514142	APBB1	O00213	710 aa		13.13	□□□□□ -0.31
PDLIM3-209	ENST00000514142	USP35	Q9P2H5	1018 aa		13.13	□□□□□ -0.31
PDLIM3-209	ENST00000514142	PLEKHD1	A6NEE1	506 aa		13.13	□□□□□ -0.31
PDLIM3-209	ENST00000514142	SLC4A3	P48751	1232 aa		13.13	□□□□□ -0.31
PDLIM3-209	ENST00000514142	MFAP1	P55081	439 aa	Known RBP	13.13	□□□□□ -0.31
PDLIM3-209	ENST00000514142	TMF1	P82094	1093 aa		13.13	□□□□□ -0.31
PDLIM3-209	ENST00000514142	GSE1	Q14687	1217 aa		13.13	□□□□□ -0.31
PDLIM3-209	ENST00000514142	CEP164	Q9UPV0	1460 aa		13.12	□□□□□ -0.31
PDLIM3-209	ENST00000514142	RWDD1	Q9H446	243 aa	Predicted RBP	13.1	□□□□□ -0.31
PDLIM3-209	ENST00000514142	FOXD4L1	Q9NU39	408 aa		13.1	□□□□□ -0.31
PDLIM3-209	ENST00000514142	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.1	□□□□□ -0.31
PDLIM3-209	ENST00000514142	CALD1	Q05682	793 aa	Known RBP	13.09	□□□□□ -0.31
PDLIM3-209	ENST00000514142	SETD5	Q9C0A6	1442 aa		13.08	□□□□□ -0.32
PDLIM3-209	ENST00000514142	KTN1	Q86UP2	1357 aa	Known RBP	13.08	□□□□□ -0.32
PDLIM3-209	ENST00000514142	PDE4A	P27815	886 aa		13.07	□□□□□ -0.32
PDLIM3-209	ENST00000514142	FANCI	Q9NVI1	1328 aa		13.07	□□□□□ -0.32
PDLIM3-209	ENST00000514142	ITPRIP	Q8IWB1	547 aa		13.07	□□□□□ -0.32
PDLIM3-209	ENST00000514142	SYAP1	Q96A49	352 aa	Predicted RBP	13.07	□□□□□ -0.32
PDLIM3-209	ENST00000514142	FOXD1	Q16676	465 aa		13.07	□□□□□ -0.32
PDLIM3-209	ENST00000514142	CFAP44	Q96MT7	982 aa		13.07	□□□□□ -0.32
PDLIM3-209	ENST00000514142	MORC1	Q86VD1	984 aa		13.06	□□□□□ -0.32
PDLIM3-209	ENST00000514142	RB1CC1	Q8TDY2	1594 aa		13.06	□□□□□ -0.32
PDLIM3-209	ENST00000514142	POGK	Q9P215	609 aa		13.05	□□□□□ -0.32
PDLIM3-209	ENST00000514142	IPO8	O15397	1037 aa	Known RBP	13.04	□□□□□ -0.32
PDLIM3-209	ENST00000514142	KANK4	Q5T7N3	995 aa	Predicted RBP	13.03	□□□□□ -0.32
PDLIM3-209	ENST00000514142	PMFBP1	Q8TBY8	1022 aa		13.03	□□□□□ -0.32
PDLIM3-209	ENST00000514142	CLUAP1	Q96AJ1	413 aa		13.03	□□□□□ -0.32
PDLIM3-209	ENST00000514142	RALBP1	Q15311	655 aa		13.02	□□□□□ -0.32
PDLIM3-209	ENST00000514142	KIAA1211	Q6ZU35	1233 aa		13.02	□□□□□ -0.32
PDLIM3-209	ENST00000514142	RAB3GAP2	Q9H2M9	1393 aa		13.01	□□□□□ -0.33
PDLIM3-209	ENST00000514142	KIF27	Q86VH2	1401 aa		13.01	□□□□□ -0.33
PDLIM3-209	ENST00000514142	NOL8	Q76FK4	1167 aa	Known RBP	13	□□□□□ -0.33
PDLIM3-209	ENST00000514142	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13	□□□□□ -0.33
PDLIM3-209	ENST00000514142	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13	□□□□□ -0.33
PDLIM3-209	ENST00000514142	DDX11L8	A8MPP1	907 aa		12.99	□□□□□ -0.33
PDLIM3-209	ENST00000514142	NACAD	O15069	1562 aa		12.99	□□□□□ -0.33
PDLIM3-209	ENST00000514142	GOLGA2	Q08379	1002 aa		12.99	□□□□□ -0.33
PDLIM3-209	ENST00000514142	GNL2	Q13823	731 aa	Known RBP	12.98	□□□□□ -0.33
PDLIM3-209	ENST00000514142	EXOC6	Q8TAG9	804 aa		12.98	□□□□□ -0.33
PDLIM3-209	ENST00000514142	SOGA1	O94964	1423 aa		12.98	□□□□□ -0.33
PDLIM3-209	ENST00000514142	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.98	□□□□□ -0.33
PDLIM3-209	ENST00000514142	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.98	□□□□□ -0.33
PDLIM3-209	ENST00000514142	FAM161A	Q3B820	660 aa		12.98	□□□□□ -0.33
PDLIM3-209	ENST00000514142	CECR2	Q9BXF3	1484 aa		12.98	□□□□□ -0.33
PDLIM3-209	ENST00000514142	PLIN1	O60240	522 aa		12.97	□□□□□ -0.33
PDLIM3-209	ENST00000514142	DDX49	Q9Y6V7	483 aa	Known RBP	12.97	□□□□□ -0.33
PDLIM3-209	ENST00000514142	SOX12	O15370	315 aa		12.97	□□□□□ -0.33
PDLIM3-209	ENST00000514142	FAM13B	Q9NYF5	915 aa		12.97	□□□□□ -0.33
PDLIM3-209	ENST00000514142	PKD2	Q13563	968 aa		12.96	□□□□□ -0.33
PDLIM3-209	ENST00000514142	SAFB2	Q14151	953 aa	Known RBP eCLIP	12.96	□□□□□ -0.33
PDLIM3-209	ENST00000514142	CCDC146	Q8IYE0	955 aa		12.96	□□□□□ -0.33
PDLIM3-209	ENST00000514142	PDE3B	Q13370	1112 aa		12.96	□□□□□ -0.33
PDLIM3-209	ENST00000514142	SMC4	Q9NTJ3	1288 aa		12.96	□□□□□ -0.33
PDLIM3-209	ENST00000514142	VPS8	Q8N3P4	1428 aa		12.95	□□□□□ -0.34
PDLIM3-209	ENST00000514142	SRPK2	P78362	688 aa	Known RBP	12.95	□□□□□ -0.34
PDLIM3-209	ENST00000514142	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.95	□□□□□ -0.34
PDLIM3-209	ENST00000514142	HTATSF1	O43719	755 aa	Known RBP	12.95	□□□□□ -0.34
PDLIM3-209	ENST00000514142	LMOD2	Q6P5Q4	547 aa		12.95	□□□□□ -0.34
PDLIM3-209	ENST00000514142	ANO8	Q9HCE9	1232 aa	Predicted RBP	12.95	□□□□□ -0.34
PDLIM3-209	ENST00000514142	GOLGA6L1	Q8N7Z2	621 aa		12.94	□□□□□ -0.34
PDLIM3-209	ENST00000514142	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.94	□□□□□ -0.34
PDLIM3-209	ENST00000514142	CENPJ	Q9HC77	1338 aa	Predicted RBP	12.93	□□□□□ -0.34
PDLIM3-209	ENST00000514142	HAP1	P54257	671 aa	Predicted RBP	12.93	□□□□□ -0.34
PDLIM3-209	ENST00000514142	NLRP13	Q86W25	1043 aa		12.93	□□□□□ -0.34
PDLIM3-209	ENST00000514142	MPHOSPH9	Q99550	1183 aa		12.93	□□□□□ -0.34
PDLIM3-209	ENST00000514142	TRIM6-TRIM34	B2RNG4	842 aa		12.92	□□□□□ -0.34
PDLIM3-209	ENST00000514142	PHF14	O94880	888 aa		12.92	□□□□□ -0.34
PDLIM3-209	ENST00000514142	ZNF771	Q7L3S4	317 aa	Predicted RBP	12.92	□□□□□ -0.34
PDLIM3-209	ENST00000514142	L3MBTL2	Q969R5	705 aa		12.92	□□□□□ -0.34
PDLIM3-209	ENST00000514142	FHAD1	B1AJZ9	1412 aa		12.92	□□□□□ -0.34
PDLIM3-209	ENST00000514142	TPM4	P67936	248 aa		12.92	□□□□□ -0.34
PDLIM3-209	ENST00000514142	RRP1	P56182	461 aa	Known RBP	12.91	□□□□□ -0.34
PDLIM3-209	ENST00000514142	NOC3L	Q8WTT2	800 aa	Known RBP	12.91	□□□□□ -0.34
PDLIM3-209	ENST00000514142	CRBN	Q96SW2	442 aa		12.91	□□□□□ -0.34
PDLIM3-209	ENST00000514142	ROCK2	O75116	1388 aa	Known RBP	12.91	□□□□□ -0.34
PDLIM3-209	ENST00000514142	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	12.91	□□□□□ -0.34
PDLIM3-209	ENST00000514142	FOXD4L3	Q6VB84	417 aa	Predicted RBP	12.91	□□□□□ -0.34
PDLIM3-209	ENST00000514142	ST18	O60284	1047 aa		12.91	□□□□□ -0.34
PDLIM3-209	ENST00000514142	HSP90B1	P14625	803 aa	Known RBP	12.91	□□□□□ -0.34
PDLIM3-209	ENST00000514142	RTF1	Q92541	710 aa	Known RBP	12.9	□□□□□ -0.34
PDLIM3-209	ENST00000514142	SKOR2	Q2VWA4	1001 aa	Predicted RBP	12.9	□□□□□ -0.34
PDLIM3-209	ENST00000514142	CSPP1	Q1MSJ5	1256 aa		12.89	□□□□□ -0.35
PDLIM3-209	ENST00000514142	FAM43A	Q8N2R8	423 aa		12.88	□□□□□ -0.35
PDLIM3-209	ENST00000514142	ZBED9	Q6R2W3	1325 aa		12.88	□□□□□ -0.35
PDLIM3-209	ENST00000514142	NFKBIB	Q15653	356 aa		12.88	□□□□□ -0.35
PDLIM3-209	ENST00000514142	ARHGAP35	Q9NRY4	1499 aa		12.88	□□□□□ -0.35
PDLIM3-209	ENST00000514142	IL27	Q8NEV9	243 aa		12.87	□□□□□ -0.35
PDLIM3-209	ENST00000514142	PRKRIP1	Q9H875	184 aa	Predicted RBP	12.87	□□□□□ -0.35
PDLIM3-209	ENST00000514142	BCL2L13	Q9BXK5	485 aa		12.87	□□□□□ -0.35
PDLIM3-209	ENST00000514142	CLSTN1	O94985	981 aa		12.86	□□□□□ -0.35
PDLIM3-209	ENST00000514142	BRPF3	Q9ULD4	1205 aa		12.86	□□□□□ -0.35
PDLIM3-209	ENST00000514142	ZNF592	Q92610	1267 aa		12.85	□□□□□ -0.35
PDLIM3-209	ENST00000514142	CCAR2	Q8N163	923 aa	Known RBP	12.85	□□□□□ -0.35
PDLIM3-209	ENST00000514142	CREBRF	Q8IUR6	639 aa		12.84	□□□□□ -0.35
PDLIM3-209	ENST00000514142	STK26	Q9P289	416 aa		12.84	□□□□□ -0.35
PDLIM3-209	ENST00000514142	RRP7A	Q9Y3A4	280 aa	Known RBP	12.84	□□□□□ -0.35
PDLIM3-209	ENST00000514142	HMMR	O75330	724 aa		12.84	□□□□□ -0.35
PDLIM3-209	ENST00000514142	SLC4A10	Q6U841	1118 aa		12.84	□□□□□ -0.35
PDLIM3-209	ENST00000514142	COG6	Q9Y2V7	657 aa		12.84	□□□□□ -0.35
PDLIM3-209	ENST00000514142	DHX57	Q6P158	1386 aa	Known RBP	12.84	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms