RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 ERCC6Q03468 1493 aa13.26□□□□□ -0.29
VCAN-210ENST00000513960 POLR3GLQ9BT43 218 aa13.26□□□□□ -0.29
VCAN-210ENST00000513960 WDR62O43379 1518 aa13.26□□□□□ -0.29
VCAN-210ENST00000513960 RTN4Q9NQC3 1192 aaKnown RBP13.24□□□□□ -0.29
VCAN-210ENST00000513960 MPHOSPH9Q99550 1183 aa13.23□□□□□ -0.29
VCAN-210ENST00000513960 CCER2I3L3R5 266 aa13.23□□□□□ -0.29
VCAN-210ENST00000513960 AKNAQ7Z591 1439 aa13.22□□□□□ -0.29
VCAN-210ENST00000513960 GRIN2AQ12879 1464 aa13.22□□□□□ -0.29
VCAN-210ENST00000513960 NPM2Q86SE8 214 aaKnown RBP13.21□□□□□ -0.29
VCAN-210ENST00000513960 PRKCSHP14314 528 aaPredicted RBP13.21□□□□□ -0.3
VCAN-210ENST00000513960 KIAA0556O60303 1618 aa13.2□□□□□ -0.3
VCAN-210ENST00000513960 DISP1Q96F81 1524 aa13.2□□□□□ -0.3
VCAN-210ENST00000513960 FANCIQ9NVI1 1328 aa13.2□□□□□ -0.3
VCAN-210ENST00000513960 CFDP1Q9UEE9 299 aaPredicted RBP13.18□□□□□ -0.3
VCAN-210ENST00000513960 NOP58Q9Y2X3 529 aaKnown RBP13.18□□□□□ -0.3
VCAN-210ENST00000513960 GCC2Q8IWJ2 1684 aa13.18□□□□□ -0.3
VCAN-210ENST00000513960 ZNF644Q9H582 1327 aaPredicted RBP13.18□□□□□ -0.3
VCAN-210ENST00000513960 NUP153P49790 1475 aaKnown RBP13.18□□□□□ -0.3
VCAN-210ENST00000513960 EIF4G3O43432 1585 aaKnown RBP13.18□□□□□ -0.3
VCAN-210ENST00000513960 FOXD1Q16676 465 aa13.18□□□□□ -0.3
VCAN-210ENST00000513960 PPP4R2Q9NY27 417 aa13.18□□□□□ -0.3
VCAN-210ENST00000513960 ANP32AP39687 249 aaKnown RBP13.17□□□□□ -0.3
VCAN-210ENST00000513960 EIF4G2P78344 907 aaKnown RBP eCLIP13.17□□□□□ -0.3
VCAN-210ENST00000513960 MYT1LQ9UL68 1186 aa13.17□□□□□ -0.3
VCAN-210ENST00000513960 ZNF777Q9ULD5 760 aaPredicted RBP13.17□□□□□ -0.3
VCAN-210ENST00000513960 DAPK1P53355 1430 aa13.17□□□□□ -0.3
VCAN-210ENST00000513960 SLC4A1APQ9BWU0 796 aaKnown RBP13.17□□□□□ -0.3
VCAN-210ENST00000513960 MAGI1Q96QZ7 1491 aaPredicted RBP13.16□□□□□ -0.3
VCAN-210ENST00000513960 ROCK1Q13464 1354 aa13.16□□□□□ -0.3
VCAN-210ENST00000513960 RAPGEF6Q8TEU7 1601 aa13.16□□□□□ -0.3
VCAN-210ENST00000513960 CARMIL2Q6F5E8 1435 aa13.16□□□□□ -0.3
VCAN-210ENST00000513960 HSPA5P11021 654 aaKnown RBP13.16□□□□□ -0.3
VCAN-210ENST00000513960 L3MBTL2Q969R5 705 aa13.15□□□□□ -0.3
VCAN-210ENST00000513960 JPH4Q96JJ6 628 aa13.15□□□□□ -0.3
VCAN-210ENST00000513960 MRS2Q9HD23 443 aa13.14□□□□□ -0.31
VCAN-210ENST00000513960 ABCC5O15440 1437 aa13.14□□□□□ -0.31
VCAN-210ENST00000513960 ANO8Q9HCE9 1232 aaPredicted RBP13.14□□□□□ -0.31
VCAN-210ENST00000513960 SYNJ2O15056 1496 aa13.14□□□□□ -0.31
VCAN-210ENST00000513960 TROQ12816 1431 aaPredicted RBP13.14□□□□□ -0.31
VCAN-210ENST00000513960 PRG4Q92954 1404 aaPredicted RBP13.13□□□□□ -0.31
VCAN-210ENST00000513960 KDM6BO15054 1643 aa13.13□□□□□ -0.31
VCAN-210ENST00000513960 CCDC136Q96JN2 1154 aa13.13□□□□□ -0.31
VCAN-210ENST00000513960 ZBTB47Q9UFB7 747 aaPredicted RBP13.12□□□□□ -0.31
VCAN-210ENST00000513960 PLEKHD1A6NEE1 506 aa13.12□□□□□ -0.31
VCAN-210ENST00000513960 PLB1Q6P1J6 1458 aa13.11□□□□□ -0.31
VCAN-210ENST00000513960 DENND4BO75064 1496 aaPredicted RBP13.11□□□□□ -0.31
VCAN-210ENST00000513960 PAK3O75914 559 aaPredicted RBP13.1□□□□□ -0.31
VCAN-210ENST00000513960 DNMT1P26358 1616 aaKnown RBP13.1□□□□□ -0.31
VCAN-210ENST00000513960 KDM5BQ9UGL1 1544 aa13.09□□□□□ -0.31
VCAN-210ENST00000513960 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.09□□□□□ -0.31
VCAN-210ENST00000513960 WASHC2AQ641Q2 1341 aa13.09□□□□□ -0.31
VCAN-210ENST00000513960 ANKRD30BQ9BXX2 1392 aa13.09□□□□□ -0.31
VCAN-210ENST00000513960 CEP170Q5SW79 1584 aa13.08□□□□□ -0.32
VCAN-210ENST00000513960 LAS1LQ9Y4W2 734 aaKnown RBP13.07□□□□□ -0.32
VCAN-210ENST00000513960 CAMSAP2Q08AD1 1489 aa13.07□□□□□ -0.32
VCAN-210ENST00000513960 RPRD2Q5VT52 1461 aaKnown RBP13.06□□□□□ -0.32
VCAN-210ENST00000513960 GPATCH8Q9UKJ3 1502 aaKnown RBP13.06□□□□□ -0.32
VCAN-210ENST00000513960 ANKRD30AQ9BXX3 1397 aa13.06□□□□□ -0.32
VCAN-210ENST00000513960 NUP160Q12769 1436 aa13.05□□□□□ -0.32
VCAN-210ENST00000513960 EIF5BO60841 1220 aaKnown RBP13.05□□□□□ -0.32
VCAN-210ENST00000513960 NCOA1Q15788 1441 aa13.04□□□□□ -0.32
VCAN-210ENST00000513960 TSPY4P0CV99 314 aa13.04□□□□□ -0.32
VCAN-210ENST00000513960 TSPY10P0CW01 314 aa13.04□□□□□ -0.32
VCAN-210ENST00000513960 ITSN2Q9NZM3 1697 aa13.04□□□□□ -0.32
VCAN-210ENST00000513960 NBPF8Q3BBV2 869 aa13.04□□□□□ -0.32
VCAN-210ENST00000513960 CCDC184Q52MB2 194 aa13.04□□□□□ -0.32
VCAN-210ENST00000513960 SALL2Q9Y467 1007 aaPredicted RBP13.04□□□□□ -0.32
VCAN-210ENST00000513960 ZNF326Q5BKZ1 582 aaKnown RBP13.03□□□□□ -0.32
VCAN-210ENST00000513960 PKD2Q13563 968 aa13.02□□□□□ -0.32
VCAN-210ENST00000513960 IL27Q8NEV9 243 aa13.01□□□□□ -0.33
VCAN-210ENST00000513960 CCDC7Q96M83 1385 aa13.01□□□□□ -0.33
VCAN-210ENST00000513960 KIF14Q15058 1648 aa13.01□□□□□ -0.33
VCAN-210ENST00000513960 CNTLNQ9NXG0 1405 aa13□□□□□ -0.33
VCAN-210ENST00000513960 ANKRD50Q9ULJ7 1429 aa13□□□□□ -0.33
VCAN-210ENST00000513960 KIAA1107Q9UPP5 1409 aa12.99□□□□□ -0.33
VCAN-210ENST00000513960 TEX14Q8IWB6 1497 aa12.98□□□□□ -0.33
VCAN-210ENST00000513960 C11orf95C9JLR9 678 aaPredicted RBP12.98□□□□□ -0.33
VCAN-210ENST00000513960 PZPP20742 1482 aa12.98□□□□□ -0.33
VCAN-210ENST00000513960 PTPRGP23470 1445 aa12.98□□□□□ -0.33
VCAN-210ENST00000513960 NUP155O75694 1391 aa12.98□□□□□ -0.33
VCAN-210ENST00000513960 ATP10BO94823 1461 aa12.98□□□□□ -0.33
VCAN-210ENST00000513960 ADGRL2O95490 1459 aa12.98□□□□□ -0.33
VCAN-210ENST00000513960 NEFMP07197 916 aa12.97□□□□□ -0.33
VCAN-210ENST00000513960 ADCY10Q96PN6 1610 aa12.97□□□□□ -0.33
VCAN-210ENST00000513960 ADGBQ8N7X0 1667 aa12.96□□□□□ -0.33
VCAN-210ENST00000513960 IPO9Q96P70 1041 aaKnown RBP12.96□□□□□ -0.33
VCAN-210ENST00000513960 PRKRIP1Q9H875 184 aaPredicted RBP12.96□□□□□ -0.33
VCAN-210ENST00000513960 HNRNPMP52272 730 aaKnown RBP eCLIP12.96□□□□□ -0.33
VCAN-210ENST00000513960 DAXXQ9UER7 740 aaPredicted RBP12.96□□□□□ -0.33
VCAN-210ENST00000513960 C9orf84Q5VXU9 1444 aa12.95□□□□□ -0.34
VCAN-210ENST00000513960 KIF7Q2M1P5 1343 aa12.95□□□□□ -0.34
VCAN-210ENST00000513960 ABCA8O94911 1581 aa12.95□□□□□ -0.34
VCAN-210ENST00000513960 ERICH6BQ5W0A0 696 aa12.95□□□□□ -0.34
VCAN-210ENST00000513960 ABCC10Q5T3U5 1492 aa12.92□□□□□ -0.34
VCAN-210ENST00000513960 KIF15Q9NS87 1388 aa12.91□□□□□ -0.34
VCAN-210ENST00000513960 SPATA31E1Q6ZUB1 1445 aa12.91□□□□□ -0.34
VCAN-210ENST00000513960 USP47Q96K76 1375 aa12.91□□□□□ -0.34
VCAN-210ENST00000513960 SHANK2Q9UPX8 1470 aa12.91□□□□□ -0.34
VCAN-210ENST00000513960 CROCC2H7BZ55 1655 aa12.91□□□□□ -0.34
VCAN-210ENST00000513960 RSPH4AQ5TD94 716 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms