RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ZNF777Q9ULD5 760 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-215ENST00000512632 KIF7Q2M1P5 1343 aa12.7□□□□□ -0.38
LIMCH1-215ENST00000512632 ARHGEF11O15085 1522 aa12.69□□□□□ -0.38
LIMCH1-215ENST00000512632 TCOF1Q13428 1488 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-215ENST00000512632 ANKRD30BQ9BXX2 1392 aa12.68□□□□□ -0.38
LIMCH1-215ENST00000512632 LAMC3Q9Y6N6 1575 aa12.68□□□□□ -0.38
LIMCH1-215ENST00000512632 ERICH6Q7L0X2 663 aa12.68□□□□□ -0.38
LIMCH1-215ENST00000512632 THOC2Q8NI27 1593 aaKnown RBP12.67□□□□□ -0.38
LIMCH1-215ENST00000512632 NCOA1Q15788 1441 aa12.67□□□□□ -0.38
LIMCH1-215ENST00000512632 MIA2Q96PC5 1412 aa12.67□□□□□ -0.38
LIMCH1-215ENST00000512632 ZBED9Q6R2W3 1325 aa12.64□□□□□ -0.39
LIMCH1-215ENST00000512632 AKNAQ7Z591 1439 aa12.64□□□□□ -0.39
LIMCH1-215ENST00000512632 CFDP1Q9UEE9 299 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-215ENST00000512632 ABCC5O15440 1437 aa12.64□□□□□ -0.39
LIMCH1-215ENST00000512632 DAPK1P53355 1430 aa12.64□□□□□ -0.39
LIMCH1-215ENST00000512632 HECW1Q76N89 1606 aa12.63□□□□□ -0.39
LIMCH1-215ENST00000512632 FANCIQ9NVI1 1328 aa12.63□□□□□ -0.39
LIMCH1-215ENST00000512632 RPRD2Q5VT52 1461 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-215ENST00000512632 ERICH6BQ5W0A0 696 aa12.62□□□□□ -0.39
LIMCH1-215ENST00000512632 IQGAP2Q13576 1575 aa12.62□□□□□ -0.39
LIMCH1-215ENST00000512632 BCL11AQ9H165 835 aa12.62□□□□□ -0.39
LIMCH1-215ENST00000512632 PKD2Q13563 968 aa12.61□□□□□ -0.39
LIMCH1-215ENST00000512632 FBLN2P98095 1184 aa12.6□□□□□ -0.39
LIMCH1-215ENST00000512632 GCC2Q8IWJ2 1684 aa12.6□□□□□ -0.39
LIMCH1-215ENST00000512632 KDM2AQ9Y2K7 1162 aa12.59□□□□□ -0.39
LIMCH1-215ENST00000512632 ROCK1Q13464 1354 aa12.59□□□□□ -0.39
LIMCH1-215ENST00000512632 TARBP1Q13395 1621 aaKnown RBP12.59□□□□□ -0.39
LIMCH1-215ENST00000512632 SPATA31E1Q6ZUB1 1445 aa12.59□□□□□ -0.39
LIMCH1-215ENST00000512632 TEX14Q8IWB6 1497 aa12.58□□□□□ -0.4
LIMCH1-215ENST00000512632 PRG4Q92954 1404 aaPredicted RBP12.58□□□□□ -0.4
LIMCH1-215ENST00000512632 WDR62O43379 1518 aa12.58□□□□□ -0.4
LIMCH1-215ENST00000512632 KIF21AQ7Z4S6 1674 aa12.57□□□□□ -0.4
LIMCH1-215ENST00000512632 ZNF608Q9ULD9 1512 aaPredicted RBP12.57□□□□□ -0.4
LIMCH1-215ENST00000512632 USP47Q96K76 1375 aa12.56□□□□□ -0.4
LIMCH1-215ENST00000512632 TMC1Q8TDI8 760 aa12.56□□□□□ -0.4
LIMCH1-215ENST00000512632 NUP153P49790 1475 aaKnown RBP12.55□□□□□ -0.4
LIMCH1-215ENST00000512632 SALL2Q9Y467 1007 aaPredicted RBP12.54□□□□□ -0.4
LIMCH1-215ENST00000512632 CCDC136Q96JN2 1154 aa12.54□□□□□ -0.4
LIMCH1-215ENST00000512632 CARD11Q9BXL7 1154 aa12.54□□□□□ -0.4
LIMCH1-215ENST00000512632 NUDCQ9Y266 331 aa12.53□□□□□ -0.4
LIMCH1-215ENST00000512632 CHMP7Q8WUX9 453 aaPredicted RBP12.53□□□□□ -0.4
LIMCH1-215ENST00000512632 DHX29Q7Z478 1369 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-215ENST00000512632 PZPP20742 1482 aa12.53□□□□□ -0.4
LIMCH1-215ENST00000512632 ADAMTS12P58397 1594 aa12.52□□□□□ -0.4
LIMCH1-215ENST00000512632 DISP1Q96F81 1524 aa12.52□□□□□ -0.41
LIMCH1-215ENST00000512632 KIAA0586Q9BVV6 1533 aa12.51□□□□□ -0.41
LIMCH1-215ENST00000512632 ST20-MTHFSA0A0A6YYL1 179 aa12.51□□□□□ -0.41
LIMCH1-215ENST00000512632 PNISRQ8TF01 805 aaKnown RBP12.51□□□□□ -0.41
LIMCH1-215ENST00000512632 NUP155O75694 1391 aa12.51□□□□□ -0.41
LIMCH1-215ENST00000512632 KIAA1107Q9UPP5 1409 aa12.5□□□□□ -0.41
LIMCH1-215ENST00000512632 DCAF11Q8TEB1 546 aa12.5□□□□□ -0.41
LIMCH1-215ENST00000512632 PLB1Q6P1J6 1458 aa12.5□□□□□ -0.41
LIMCH1-215ENST00000512632 TROQ12816 1431 aaPredicted RBP12.49□□□□□ -0.41
LIMCH1-215ENST00000512632 DNMT1P26358 1616 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-215ENST00000512632 PBRM1Q86U86 1689 aa12.49□□□□□ -0.41
LIMCH1-215ENST00000512632 ANKRD30AQ9BXX3 1397 aa12.49□□□□□ -0.41
LIMCH1-215ENST00000512632 CAMSAP2Q08AD1 1489 aa12.48□□□□□ -0.41
LIMCH1-215ENST00000512632 PLEKHD1A6NEE1 506 aa12.48□□□□□ -0.41
LIMCH1-215ENST00000512632 SMG6Q86US8 1419 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-215ENST00000512632 TSPY4P0CV99 314 aa12.48□□□□□ -0.41
LIMCH1-215ENST00000512632 TSPY10P0CW01 314 aa12.48□□□□□ -0.41
LIMCH1-215ENST00000512632 MRC2Q9UBG0 1479 aa12.48□□□□□ -0.41
LIMCH1-215ENST00000512632 NBR1Q14596 966 aa12.48□□□□□ -0.41
LIMCH1-215ENST00000512632 GPATCH8Q9UKJ3 1502 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-215ENST00000512632 ANKRD50Q9ULJ7 1429 aa12.47□□□□□ -0.41
LIMCH1-215ENST00000512632 PAK3O75914 559 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-215ENST00000512632 JPH4Q96JJ6 628 aa12.47□□□□□ -0.41
LIMCH1-215ENST00000512632 HNRNPMP52272 730 aaKnown RBP eCLIP12.47□□□□□ -0.41
LIMCH1-215ENST00000512632 KIAA0556O60303 1618 aa12.46□□□□□ -0.41
LIMCH1-215ENST00000512632 RGL3Q3MIN7 710 aa12.46□□□□□ -0.41
LIMCH1-215ENST00000512632 NOP58Q9Y2X3 529 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-215ENST00000512632 RAPGEF6Q8TEU7 1601 aa12.44□□□□□ -0.42
LIMCH1-215ENST00000512632 GRIN2AQ12879 1464 aa12.43□□□□□ -0.42
LIMCH1-215ENST00000512632 BCORL1Q5H9F3 1711 aa12.43□□□□□ -0.42
LIMCH1-215ENST00000512632 IFT140Q96RY7 1462 aa12.43□□□□□ -0.42
LIMCH1-215ENST00000512632 RNF123Q5XPI4 1314 aa12.42□□□□□ -0.42
LIMCH1-215ENST00000512632 MBD5Q9P267 1494 aa12.42□□□□□ -0.42
LIMCH1-215ENST00000512632 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIMCH1-215ENST00000512632 ARID4BQ4LE39 1312 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-215ENST00000512632 KIF15Q9NS87 1388 aa12.41□□□□□ -0.42
LIMCH1-215ENST00000512632 EXOC6Q8TAG9 804 aa12.41□□□□□ -0.42
LIMCH1-215ENST00000512632 ANP32AP39687 249 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-215ENST00000512632 ROCK2O75116 1388 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-215ENST00000512632 KIF14Q15058 1648 aa12.4□□□□□ -0.42
LIMCH1-215ENST00000512632 DEKP35659 375 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-215ENST00000512632 NBPF1Q3BBV0 1214 aa12.4□□□□□ -0.42
LIMCH1-215ENST00000512632 MYBBP1AQ9BQG0 1328 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-215ENST00000512632 NPM2Q86SE8 214 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-215ENST00000512632 C9orf84Q5VXU9 1444 aa12.39□□□□□ -0.43
LIMCH1-215ENST00000512632 RALBP1Q15311 655 aa12.38□□□□□ -0.43
LIMCH1-215ENST00000512632 CC2D1BQ5T0F9 858 aaKnown RBP12.38□□□□□ -0.43
LIMCH1-215ENST00000512632 CDCA7LQ96GN5 454 aa12.38□□□□□ -0.43
LIMCH1-215ENST00000512632 CARMIL2Q6F5E8 1435 aa12.38□□□□□ -0.43
LIMCH1-215ENST00000512632 RCAN3Q9UKA8 241 aa12.38□□□□□ -0.43
LIMCH1-215ENST00000512632 RRP1P56182 461 aaKnown RBP12.37□□□□□ -0.43
LIMCH1-215ENST00000512632 ADGRL2O95490 1459 aa12.37□□□□□ -0.43
LIMCH1-215ENST00000512632 ZBTB47Q9UFB7 747 aaPredicted RBP12.37□□□□□ -0.43
LIMCH1-215ENST00000512632 IPO9Q96P70 1041 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-215ENST00000512632 KDM5CP41229 1560 aa12.36□□□□□ -0.43
LIMCH1-215ENST00000512632 RALGAPBQ86X10 1494 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms