RNA–Protein interactions for RNA: ENST00000512275.5

RFC1-213, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 841 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-213ENST00000512275 CABP2Q9NPB3 220 aa13.76□□□□□ -0.21
RFC1-213ENST00000512275 ILDR1Q86SU0 546 aaPredicted RBP13.71□□□□□ -0.21
RFC1-213ENST00000512275 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.71□□□□□ -0.21
RFC1-213ENST00000512275 P3H3Q8IVL6 736 aa13.7□□□□□ -0.22
RFC1-213ENST00000512275 L3MBTL3Q96JM7 780 aaPredicted RBP13.69□□□□□ -0.22
RFC1-213ENST00000512275 FBXO22Q8NEZ5 403 aa13.66□□□□□ -0.22
RFC1-213ENST00000512275 DPY19L2Q6NUT2 758 aa13.65□□□□□ -0.22
RFC1-213ENST00000512275 C3orf67Q6ZVT6 689 aa13.65□□□□□ -0.22
RFC1-213ENST00000512275 EFCAB3Q8N7B9 438 aa13.63□□□□□ -0.23
RFC1-213ENST00000512275 KCNV2Q8TDN2 545 aa13.63□□□□□ -0.23
RFC1-213ENST00000512275 ST18O60284 1047 aa13.62□□□□□ -0.23
RFC1-213ENST00000512275 SOX12O15370 315 aa13.61□□□□□ -0.23
RFC1-213ENST00000512275 PPP1R37O75864 691 aa13.61□□□□□ -0.23
RFC1-213ENST00000512275 NLRP6P59044 892 aa13.6□□□□□ -0.23
RFC1-213ENST00000512275 WDR70Q9NW82 654 aa13.6□□□□□ -0.23
RFC1-213ENST00000512275 CDAN1Q8IWY9 1227 aa13.58□□□□□ -0.24
RFC1-213ENST00000512275 PHF8Q9UPP1 1060 aa13.58□□□□□ -0.24
RFC1-213ENST00000512275 SNPHO15079 494 aa13.56□□□□□ -0.24
RFC1-213ENST00000512275 BOLA1Q9Y3E2 137 aa13.56□□□□□ -0.24
RFC1-213ENST00000512275 G3V3G9 751 aa13.53□□□□□ -0.24
RFC1-213ENST00000512275 MS4A4AQ96JQ5 239 aa13.49□□□□□ -0.25
RFC1-213ENST00000512275 TMEM121BQ9BXQ6 578 aaPredicted RBP13.49□□□□□ -0.25
RFC1-213ENST00000512275 ARHGEF1Q92888 912 aaKnown RBP13.47□□□□□ -0.25
RFC1-213ENST00000512275 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.45□□□□□ -0.26
RFC1-213ENST00000512275 NCKAP5LQ9HCH0 1330 aa13.44□□□□□ -0.26
RFC1-213ENST00000512275 E2F4Q16254 413 aa13.43□□□□□ -0.26
RFC1-213ENST00000512275 ABCC9O60706 1549 aa13.43□□□□□ -0.26
RFC1-213ENST00000512275 LMOD2Q6P5Q4 547 aa13.42□□□□□ -0.26
RFC1-213ENST00000512275 MARVELD3Q96A59 401 aa13.42□□□□□ -0.26
RFC1-213ENST00000512275 ZCCHC6Q5VYS8 1495 aaKnown RBP13.4□□□□□ -0.26
RFC1-213ENST00000512275 MFSD10Q14728 455 aa13.39□□□□□ -0.27
RFC1-213ENST00000512275 MICALL2Q8IY33 904 aa13.39□□□□□ -0.27
RFC1-213ENST00000512275 CRISPLD2Q9H0B8 497 aa13.38□□□□□ -0.27
RFC1-213ENST00000512275 HOXB3P14651 431 aaPredicted RBP13.35□□□□□ -0.27
RFC1-213ENST00000512275 PDE4AP27815 886 aa13.34□□□□□ -0.27
RFC1-213ENST00000512275 TESPA1A2RU30 521 aaPredicted RBP13.33□□□□□ -0.28
RFC1-213ENST00000512275 EMP3P54852 163 aa13.33□□□□□ -0.28
RFC1-213ENST00000512275 LARP6Q9BRS8 491 aaKnown RBP13.33□□□□□ -0.28
RFC1-213ENST00000512275 TMEM92Q6UXU6 159 aa13.32□□□□□ -0.28
RFC1-213ENST00000512275 ARIH1Q9Y4X5 557 aaPredicted RBP13.32□□□□□ -0.28
RFC1-213ENST00000512275 SEMA3EO15041 775 aa13.3□□□□□ -0.28
RFC1-213ENST00000512275 TULP1O00294 542 aaPredicted RBP13.29□□□□□ -0.28
RFC1-213ENST00000512275 CAMK2BQ13554 666 aa13.28□□□□□ -0.28
RFC1-213ENST00000512275 SPNS2Q8IVW8 549 aa13.28□□□□□ -0.28
RFC1-213ENST00000512275 DDX27Q96GQ7 796 aaKnown RBP13.28□□□□□ -0.28
RFC1-213ENST00000512275 MMRN1Q13201 1228 aa13.27□□□□□ -0.29
RFC1-213ENST00000512275 DOK7Q18PE1 504 aa13.27□□□□□ -0.29
RFC1-213ENST00000512275 ZNF710Q8N1W2 664 aa13.25□□□□□ -0.29
RFC1-213ENST00000512275 FAM205CA6NFA0 338 aa13.23□□□□□ -0.29
RFC1-213ENST00000512275 HS3ST6Q96QI5 342 aa13.23□□□□□ -0.29
RFC1-213ENST00000512275 POTEB3A0JP26 581 aa13.22□□□□□ -0.29
RFC1-213ENST00000512275 POTEBQ6S5H4 581 aa13.22□□□□□ -0.29
RFC1-213ENST00000512275 ZC3H15Q8WU90 426 aaKnown RBP13.22□□□□□ -0.29
RFC1-213ENST00000512275 HOXB1P14653 301 aaPredicted RBP13.21□□□□□ -0.29
RFC1-213ENST00000512275 RIMBP2O15034 1052 aa13.19□□□□□ -0.3
RFC1-213ENST00000512275 DCAF1Q9Y4B6 1507 aa13.18□□□□□ -0.3
RFC1-213ENST00000512275 TMEM132AQ24JP5 1023 aa13.18□□□□□ -0.3
RFC1-213ENST00000512275 GPHNQ9NQX3 736 aaPredicted RBP13.17□□□□□ -0.3
RFC1-213ENST00000512275 PPP1R15BQ5SWA1 713 aa13.14□□□□□ -0.31
RFC1-213ENST00000512275 SMYD5Q6GMV2 418 aa13.13□□□□□ -0.31
RFC1-213ENST00000512275 ZSWIM6Q9HCJ5 1215 aa13.13□□□□□ -0.31
RFC1-213ENST00000512275 KRTAP3-3Q9BYR6 98 aa13.12□□□□□ -0.31
RFC1-213ENST00000512275 KRTAP3-2Q9BYR7 98 aa13.12□□□□□ -0.31
RFC1-213ENST00000512275 BRPF1P55201 1214 aaPredicted RBP13.11□□□□□ -0.31
RFC1-213ENST00000512275 ERBB3P21860 1342 aa13.11□□□□□ -0.31
RFC1-213ENST00000512275 GTF3C3Q9Y5Q9 886 aa13.1□□□□□ -0.31
RFC1-213ENST00000512275 NACADO15069 1562 aa13.09□□□□□ -0.31
RFC1-213ENST00000512275 ZMYND10O75800 440 aa13.09□□□□□ -0.31
RFC1-213ENST00000512275 GPR153Q6NV75 609 aa13.09□□□□□ -0.31
RFC1-213ENST00000512275 KIF3CO14782 793 aa13.08□□□□□ -0.32
RFC1-213ENST00000512275 MYO15BQ96JP2 1530 aa13.08□□□□□ -0.32
RFC1-213ENST00000512275 C2orf72A6NCS6 295 aa13.07□□□□□ -0.32
RFC1-213ENST00000512275 DSG2Q14126 1118 aa13.06□□□□□ -0.32
RFC1-213ENST00000512275 SLC24A3Q9HC58 644 aa13.06□□□□□ -0.32
RFC1-213ENST00000512275 EMILIN3Q9NT22 766 aa13.06□□□□□ -0.32
RFC1-213ENST00000512275 MLLT3P42568 568 aaPredicted RBP13.05□□□□□ -0.32
RFC1-213ENST00000512275 RB1CC1Q8TDY2 1594 aa13.05□□□□□ -0.32
RFC1-213ENST00000512275 VARS2Q5ST30 1063 aaKnown RBP13.04□□□□□ -0.32
RFC1-213ENST00000512275 TIMELESSQ9UNS1 1208 aa13.04□□□□□ -0.32
RFC1-213ENST00000512275 FOXK1P85037 733 aa13.03□□□□□ -0.32
RFC1-213ENST00000512275 ARSIQ5FYB1 569 aa13.03□□□□□ -0.32
RFC1-213ENST00000512275 PDIA6Q15084 440 aa13.02□□□□□ -0.33
RFC1-213ENST00000512275 BARGINQ6ZT62 677 aa13.02□□□□□ -0.33
RFC1-213ENST00000512275 DPYSL4O14531 572 aa13.01□□□□□ -0.33
RFC1-213ENST00000512275 TMC2Q8TDI7 906 aa13□□□□□ -0.33
RFC1-213ENST00000512275 SPDYE16A6NNV3 312 aaPredicted RBP12.99□□□□□ -0.33
RFC1-213ENST00000512275 RBM26Q5T8P6 1007 aaKnown RBP12.99□□□□□ -0.33
RFC1-213ENST00000512275 KHSRPQ92945 711 aaKnown RBP eCLIP12.99□□□□□ -0.33
RFC1-213ENST00000512275 NEUROD2Q15784 382 aa12.96□□□□□ -0.33
RFC1-213ENST00000512275 GPIHBP1Q8IV16 184 aa12.95□□□□□ -0.34
RFC1-213ENST00000512275 SCRIBQ14160 1630 aa12.94□□□□□ -0.34
RFC1-213ENST00000512275 PLPP6Q8IY26 295 aa12.93□□□□□ -0.34
RFC1-213ENST00000512275 ZNF687Q8N1G0 1237 aa12.93□□□□□ -0.34
RFC1-213ENST00000512275 SHROOM4Q9ULL8 1493 aa12.92□□□□□ -0.34
RFC1-213ENST00000512275 ZNF316A6NFI3 1004 aaPredicted RBP12.92□□□□□ -0.34
RFC1-213ENST00000512275 SLC34A2O95436 690 aa12.91□□□□□ -0.34
RFC1-213ENST00000512275 UNC13AQ9UPW8 1703 aa12.89□□□□□ -0.35
RFC1-213ENST00000512275 NUDT7P0C024 238 aa12.89□□□□□ -0.35
RFC1-213ENST00000512275 ERICH6Q7L0X2 663 aa12.89□□□□□ -0.35
RFC1-213ENST00000512275 PCDHGA4Q9Y5G9 962 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms