RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ESPNB1AK53 854 aa15.67■□□□□ 0.1
LIMCH1-213ENST00000511496 TPM2P07951 284 aa15.66■□□□□ 0.1
LIMCH1-213ENST00000511496 CNTLNQ9NXG0 1405 aa15.66■□□□□ 0.1
LIMCH1-213ENST00000511496 NAP1L2Q9ULW6 460 aaPredicted RBP15.66■□□□□ 0.1
LIMCH1-213ENST00000511496 CENPJQ9HC77 1338 aaPredicted RBP15.65■□□□□ 0.1
LIMCH1-213ENST00000511496 PLIN1O60240 522 aa15.65■□□□□ 0.1
LIMCH1-213ENST00000511496 FAM13BQ9NYF5 915 aa15.65■□□□□ 0.1
LIMCH1-213ENST00000511496 PRDM10Q9NQV6 1147 aa15.65■□□□□ 0.1
LIMCH1-213ENST00000511496 KIAA1211Q6ZU35 1233 aa15.64■□□□□ 0.09
LIMCH1-213ENST00000511496 RCAN3Q9UKA8 241 aa15.64■□□□□ 0.09
LIMCH1-213ENST00000511496 TRIM44Q96DX7 344 aaPredicted RBP15.63■□□□□ 0.09
LIMCH1-213ENST00000511496 MYH16Q9H6N6 1097 aa15.62■□□□□ 0.09
LIMCH1-213ENST00000511496 ERBB4Q15303 1308 aa15.62■□□□□ 0.09
LIMCH1-213ENST00000511496 CANXP27824 592 aaKnown RBP15.61■□□□□ 0.09
LIMCH1-213ENST00000511496 FAM161AQ3B820 660 aa15.6■□□□□ 0.09
LIMCH1-213ENST00000511496 GTF2E1P29083 439 aaPredicted RBP15.59■□□□□ 0.09
LIMCH1-213ENST00000511496 FHAD1B1AJZ9 1412 aa15.59■□□□□ 0.09
LIMCH1-213ENST00000511496 PAXIP1Q6ZW49 1069 aaPredicted RBP15.58■□□□□ 0.08
LIMCH1-213ENST00000511496 ARAP1Q96P48 1450 aa15.57■□□□□ 0.08
LIMCH1-213ENST00000511496 TMC1Q8TDI8 760 aa15.57■□□□□ 0.08
LIMCH1-213ENST00000511496 CRBNQ96SW2 442 aa15.57■□□□□ 0.08
LIMCH1-213ENST00000511496 TAF7LQ5H9L4 462 aa15.56■□□□□ 0.08
LIMCH1-213ENST00000511496 C8orf34Q49A92 452 aa15.55■□□□□ 0.08
LIMCH1-213ENST00000511496 SPRYD3Q8NCJ5 442 aa15.55■□□□□ 0.08
LIMCH1-213ENST00000511496 STAC3Q96MF2 364 aa15.55■□□□□ 0.08
LIMCH1-213ENST00000511496 CCDC7Q96M83 1385 aa15.54■□□□□ 0.08
LIMCH1-213ENST00000511496 AMER1Q5JTC6 1135 aaPredicted RBP15.54■□□□□ 0.08
LIMCH1-213ENST00000511496 BAZ1AQ9NRL2 1556 aaPredicted RBP15.54■□□□□ 0.08
LIMCH1-213ENST00000511496 ATP1B4Q9UN42 357 aaPredicted RBP15.53■□□□□ 0.08
LIMCH1-213ENST00000511496 FSD2A1L4K1 749 aa15.53■□□□□ 0.08
LIMCH1-213ENST00000511496 MRE11P49959 708 aa15.52■□□□□ 0.07
LIMCH1-213ENST00000511496 PLCD3Q8N3E9 789 aa15.52■□□□□ 0.07
LIMCH1-213ENST00000511496 RIPK4P57078 832 aa15.5■□□□□ 0.07
LIMCH1-213ENST00000511496 BECN1Q14457 450 aa15.5■□□□□ 0.07
LIMCH1-213ENST00000511496 SMAP1Q8IYB5 467 aaPredicted RBP15.5■□□□□ 0.07
LIMCH1-213ENST00000511496 GRPEL1Q9HAV7 217 aa15.5■□□□□ 0.07
LIMCH1-213ENST00000511496 VGLL3A8MV65 326 aa15.49■□□□□ 0.07
LIMCH1-213ENST00000511496 PNISRQ8TF01 805 aaKnown RBP15.48■□□□□ 0.07
LIMCH1-213ENST00000511496 R3HCC1Q9Y3T6 440 aaKnown RBP15.48■□□□□ 0.07
LIMCH1-213ENST00000511496 NCOA2Q15596 1464 aa15.47■□□□□ 0.07
LIMCH1-213ENST00000511496 CDCA7LQ96GN5 454 aa15.46■□□□□ 0.07
LIMCH1-213ENST00000511496 MAP7D2Q96T17 732 aa15.46■□□□□ 0.07
LIMCH1-213ENST00000511496 KIF7Q2M1P5 1343 aa15.46■□□□□ 0.07
LIMCH1-213ENST00000511496 TRAK2O60296 914 aa15.46■□□□□ 0.07
LIMCH1-213ENST00000511496 PHLDB1Q86UU1 1377 aa15.46■□□□□ 0.07
LIMCH1-213ENST00000511496 ANP32BQ92688 251 aaKnown RBP15.45■□□□□ 0.06
LIMCH1-213ENST00000511496 KTN1Q86UP2 1357 aaKnown RBP15.45■□□□□ 0.06
LIMCH1-213ENST00000511496 NCLP19338 710 aaKnown RBP15.44■□□□□ 0.06
LIMCH1-213ENST00000511496 MCM4P33991 863 aa15.44■□□□□ 0.06
LIMCH1-213ENST00000511496 C20orf194Q5TEA3 1177 aa15.44■□□□□ 0.06
LIMCH1-213ENST00000511496 FOXD1Q16676 465 aa15.44■□□□□ 0.06
LIMCH1-213ENST00000511496 TNNT2P45379 298 aaPredicted RBP15.43■□□□□ 0.06
LIMCH1-213ENST00000511496 IPO4Q8TEX9 1081 aaKnown RBP15.42■□□□□ 0.06
LIMCH1-213ENST00000511496 PPP4R3BQ5MIZ7 849 aa15.41■□□□□ 0.06
LIMCH1-213ENST00000511496 CENPQQ7L2Z9 268 aaPredicted RBP15.41■□□□□ 0.06
LIMCH1-213ENST00000511496 MSNP26038 577 aaKnown RBP15.4■□□□□ 0.06
LIMCH1-213ENST00000511496 NCOA1Q15788 1441 aa15.4■□□□□ 0.06
LIMCH1-213ENST00000511496 SEC24BO95487 1268 aa15.4■□□□□ 0.06
LIMCH1-213ENST00000511496 OFD1O75665 1012 aa15.39■□□□□ 0.05
LIMCH1-213ENST00000511496 MAPK8IP2Q13387 824 aaPredicted RBP15.39■□□□□ 0.05
LIMCH1-213ENST00000511496 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.39■□□□□ 0.05
LIMCH1-213ENST00000511496 UQCRHLA0A096LP55 91 aa15.38■□□□□ 0.05
LIMCH1-213ENST00000511496 UQCRHP07919 91 aa15.38■□□□□ 0.05
LIMCH1-213ENST00000511496 DMTNQ08495 405 aa15.38■□□□□ 0.05
LIMCH1-213ENST00000511496 ANTXR1Q9H6X2 564 aa15.38■□□□□ 0.05
LIMCH1-213ENST00000511496 L3MBTL2Q969R5 705 aa15.38■□□□□ 0.05
LIMCH1-213ENST00000511496 MAP3K1Q13233 1512 aa15.38■□□□□ 0.05
LIMCH1-213ENST00000511496 ERICH3Q5RHP9 1530 aa15.38■□□□□ 0.05
LIMCH1-213ENST00000511496 ZNF830Q96NB3 372 aaPredicted RBP15.37■□□□□ 0.05
LIMCH1-213ENST00000511496 KDM2BQ8NHM5 1336 aa15.37■□□□□ 0.05
LIMCH1-213ENST00000511496 TMEM51Q9NW97 253 aa15.36■□□□□ 0.05
LIMCH1-213ENST00000511496 SYNJ1O43426 1573 aa15.36■□□□□ 0.05
LIMCH1-213ENST00000511496 USP19O94966 1318 aa15.35■□□□□ 0.05
LIMCH1-213ENST00000511496 ZSCAN30Q86W11 494 aa15.34■□□□□ 0.05
LIMCH1-213ENST00000511496 GAS2L3Q86XJ1 694 aa15.34■□□□□ 0.05
LIMCH1-213ENST00000511496 KLHL34Q8N239 644 aa15.34■□□□□ 0.05
LIMCH1-213ENST00000511496 TOP2AP11388 1531 aaKnown RBP15.33■□□□□ 0.05
LIMCH1-213ENST00000511496 ZSCAN20P17040 1043 aaPredicted RBP15.33■□□□□ 0.05
LIMCH1-213ENST00000511496 UTP14CQ5TAP6 766 aaKnown RBP15.33■□□□□ 0.04
LIMCH1-213ENST00000511496 TBC1D2Q9BYX2 928 aa15.33■□□□□ 0.04
LIMCH1-213ENST00000511496 ZBTB7CA1YPR0 619 aa15.32■□□□□ 0.04
LIMCH1-213ENST00000511496 CCDC18Q5T9S5 1454 aa15.32■□□□□ 0.04
LIMCH1-213ENST00000511496 CBX1P83916 185 aa15.31■□□□□ 0.04
LIMCH1-213ENST00000511496 ZBTB22O15209 634 aa15.31■□□□□ 0.04
LIMCH1-213ENST00000511496 CDK11BP21127 795 aaKnown RBP15.31■□□□□ 0.04
LIMCH1-213ENST00000511496 XPCQ01831 940 aaPredicted RBP15.31■□□□□ 0.04
LIMCH1-213ENST00000511496 NBPF8Q3BBV2 869 aa15.3■□□□□ 0.04
LIMCH1-213ENST00000511496 MTERF4Q7Z6M4 381 aaKnown RBP15.3■□□□□ 0.04
LIMCH1-213ENST00000511496 UACAQ9BZF9 1416 aa15.29■□□□□ 0.04
LIMCH1-213ENST00000511496 KDM5BQ9UGL1 1544 aa15.29■□□□□ 0.04
LIMCH1-213ENST00000511496 PDE3BQ13370 1112 aa15.29■□□□□ 0.04
LIMCH1-213ENST00000511496 UPF2Q9HAU5 1272 aaKnown RBP15.29■□□□□ 0.04
LIMCH1-213ENST00000511496 DHX29Q7Z478 1369 aaKnown RBP15.28■□□□□ 0.04
LIMCH1-213ENST00000511496 P3H3Q8IVL6 736 aa15.28■□□□□ 0.04
LIMCH1-213ENST00000511496 ZNF326Q5BKZ1 582 aaKnown RBP15.27■□□□□ 0.04
LIMCH1-213ENST00000511496 CCDC94Q9BW85 323 aaPredicted RBP15.27■□□□□ 0.04
LIMCH1-213ENST00000511496 IGSF3O75054 1194 aa15.27■□□□□ 0.03
LIMCH1-213ENST00000511496 TERF1P54274 439 aa15.27■□□□□ 0.03
LIMCH1-213ENST00000511496 AQRO60306 1485 aaKnown RBP eCLIP15.26■□□□□ 0.03
LIMCH1-213ENST00000511496 ARHGAP35Q9NRY4 1499 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms