RNA–Protein interactions for RNA: ENST00000511125.1

SMAD1-209, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 3,293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-209ENST00000511125 RAPGEF3O95398 923 aa12.06□□□□□ -0.48
SMAD1-209ENST00000511125 CCER1Q8TC90 406 aaPredicted RBP12.06□□□□□ -0.48
SMAD1-209ENST00000511125 PTPRKQ15262 1439 aa12.05□□□□□ -0.48
SMAD1-209ENST00000511125 CD109Q6YHK3 1445 aa12.05□□□□□ -0.48
SMAD1-209ENST00000511125 ABCC10Q5T3U5 1492 aa12.05□□□□□ -0.48
SMAD1-209ENST00000511125 TSPY4P0CV99 314 aa12.04□□□□□ -0.48
SMAD1-209ENST00000511125 TSPY10P0CW01 314 aa12.04□□□□□ -0.48
SMAD1-209ENST00000511125 PTPN23Q9H3S7 1636 aa12.03□□□□□ -0.48
SMAD1-209ENST00000511125 TRIM52Q96A61 297 aa12.03□□□□□ -0.48
SMAD1-209ENST00000511125 CAMSAP2Q08AD1 1489 aa12.02□□□□□ -0.49
SMAD1-209ENST00000511125 TSPOAP1O95153 1857 aa12.02□□□□□ -0.49
SMAD1-209ENST00000511125 PLCH2O75038 1416 aa12□□□□□ -0.49
SMAD1-209ENST00000511125 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12□□□□□ -0.49
SMAD1-209ENST00000511125 CDC42BPAQ5VT25 1732 aa11.99□□□□□ -0.49
SMAD1-209ENST00000511125 FANCAO15360 1455 aa11.99□□□□□ -0.49
SMAD1-209ENST00000511125 MIA2Q96PC5 1412 aa11.98□□□□□ -0.49
SMAD1-209ENST00000511125 SCAPERQ9BY12 1400 aa11.98□□□□□ -0.49
SMAD1-209ENST00000511125 ABCC5O15440 1437 aa11.98□□□□□ -0.49
SMAD1-209ENST00000511125 TRAPPC8Q9Y2L5 1435 aa11.97□□□□□ -0.49
SMAD1-209ENST00000511125 CDC42BPBQ9Y5S2 1711 aa11.97□□□□□ -0.49
SMAD1-209ENST00000511125 DAPK1P53355 1430 aa11.97□□□□□ -0.49
SMAD1-209ENST00000511125 SYCP2Q9BX26 1530 aa11.97□□□□□ -0.49
SMAD1-209ENST00000511125 RAB3GAP2Q9H2M9 1393 aa11.96□□□□□ -0.49
SMAD1-209ENST00000511125 FOXD1Q16676 465 aa11.96□□□□□ -0.49
SMAD1-209ENST00000511125 ARHGEF12Q9NZN5 1544 aa11.96□□□□□ -0.5
SMAD1-209ENST00000511125 SPAG9O60271 1321 aaKnown RBP11.95□□□□□ -0.5
SMAD1-209ENST00000511125 SAMD9LQ8IVG5 1584 aa11.94□□□□□ -0.5
SMAD1-209ENST00000511125 AKNAQ7Z591 1439 aa11.94□□□□□ -0.5
SMAD1-209ENST00000511125 ADGRL1O94910 1474 aa11.94□□□□□ -0.5
SMAD1-209ENST00000511125 MYO5CQ9NQX4 1742 aa11.94□□□□□ -0.5
SMAD1-209ENST00000511125 MAPKBP1O60336 1514 aa11.93□□□□□ -0.5
SMAD1-209ENST00000511125 SETD5Q9C0A6 1442 aa11.92□□□□□ -0.5
SMAD1-209ENST00000511125 ITSN2Q9NZM3 1697 aa11.92□□□□□ -0.5
SMAD1-209ENST00000511125 NEUROD1Q13562 356 aa11.92□□□□□ -0.5
SMAD1-209ENST00000511125 MLECQ14165 292 aa11.92□□□□□ -0.5
SMAD1-209ENST00000511125 PLPPR3Q6T4P5 718 aa11.92□□□□□ -0.5
SMAD1-209ENST00000511125 TCOF1Q13428 1488 aaKnown RBP11.92□□□□□ -0.5
SMAD1-209ENST00000511125 PREX2Q70Z35 1606 aa11.92□□□□□ -0.5
SMAD1-209ENST00000511125 C9orf84Q5VXU9 1444 aa11.91□□□□□ -0.5
SMAD1-209ENST00000511125 MBD5Q9P267 1494 aa11.91□□□□□ -0.5
SMAD1-209ENST00000511125 ABCA9Q8IUA7 1624 aa11.91□□□□□ -0.5
SMAD1-209ENST00000511125 DIP2BQ9P265 1576 aa11.9□□□□□ -0.5
SMAD1-209ENST00000511125 GGT6Q6P531 493 aa11.89□□□□□ -0.51
SMAD1-209ENST00000511125 ANKRD30AQ9BXX3 1397 aa11.89□□□□□ -0.51
SMAD1-209ENST00000511125 KIF15Q9NS87 1388 aa11.89□□□□□ -0.51
SMAD1-209ENST00000511125 NAIPQ13075 1403 aa11.89□□□□□ -0.51
SMAD1-209ENST00000511125 KIF3BO15066 747 aa11.88□□□□□ -0.51
SMAD1-209ENST00000511125 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.88□□□□□ -0.51
SMAD1-209ENST00000511125 CCDC141Q6ZP82 1450 aa11.88□□□□□ -0.51
SMAD1-209ENST00000511125 SIN3AQ96ST3 1273 aa11.87□□□□□ -0.51
SMAD1-209ENST00000511125 NCOA1Q15788 1441 aa11.87□□□□□ -0.51
SMAD1-209ENST00000511125 KDM6BO15054 1643 aa11.86□□□□□ -0.51
SMAD1-209ENST00000511125 RSPH4AQ5TD94 716 aa11.86□□□□□ -0.51
SMAD1-209ENST00000511125 SLC4A1APQ9BWU0 796 aaKnown RBP11.86□□□□□ -0.51
SMAD1-209ENST00000511125 ARID4BQ4LE39 1312 aaPredicted RBP11.86□□□□□ -0.51
SMAD1-209ENST00000511125 COL17A1Q9UMD9 1497 aaPredicted RBP11.85□□□□□ -0.51
SMAD1-209ENST00000511125 DNMT1P26358 1616 aaKnown RBP11.85□□□□□ -0.51
SMAD1-209ENST00000511125 ABCC1P33527 1531 aa11.84□□□□□ -0.51
SMAD1-209ENST00000511125 HFM1A2PYH4 1435 aa11.84□□□□□ -0.51
SMAD1-209ENST00000511125 ANKRD50Q9ULJ7 1429 aa11.84□□□□□ -0.51
SMAD1-209ENST00000511125 DENND4BO75064 1496 aaPredicted RBP11.84□□□□□ -0.51
SMAD1-209ENST00000511125 KIF13AQ9H1H9 1805 aa11.83□□□□□ -0.51
SMAD1-209ENST00000511125 KIAA1107Q9UPP5 1409 aa11.83□□□□□ -0.52
SMAD1-209ENST00000511125 NUP155O75694 1391 aa11.83□□□□□ -0.52
SMAD1-209ENST00000511125 PLEKHH2Q8IVE3 1493 aa11.83□□□□□ -0.52
SMAD1-209ENST00000511125 MPHOSPH9Q99550 1183 aa11.82□□□□□ -0.52
SMAD1-209ENST00000511125 YEATS2Q9ULM3 1422 aa11.82□□□□□ -0.52
SMAD1-209ENST00000511125 DHX57Q6P158 1386 aaKnown RBP11.82□□□□□ -0.52
SMAD1-209ENST00000511125 MAP3K4Q9Y6R4 1608 aa11.82□□□□□ -0.52
SMAD1-209ENST00000511125 SENP3Q9H4L4 574 aaPredicted RBP11.81□□□□□ -0.52
SMAD1-209ENST00000511125 PKD2Q13563 968 aa11.8□□□□□ -0.52
SMAD1-209ENST00000511125 HRCP23327 699 aa11.8□□□□□ -0.52
SMAD1-209ENST00000511125 POGZQ7Z3K3 1410 aa11.8□□□□□ -0.52
SMAD1-209ENST00000511125 GLI2P10070 1586 aa11.79□□□□□ -0.52
SMAD1-209ENST00000511125 ZNF518AQ6AHZ1 1483 aa11.79□□□□□ -0.52
SMAD1-209ENST00000511125 NEO1Q92859 1461 aa11.79□□□□□ -0.52
SMAD1-209ENST00000511125 ROCK1Q13464 1354 aa11.78□□□□□ -0.52
SMAD1-209ENST00000511125 TEX14Q8IWB6 1497 aa11.78□□□□□ -0.52
SMAD1-209ENST00000511125 ARHGEF5Q12774 1597 aa11.77□□□□□ -0.53
SMAD1-209ENST00000511125 PPRC1Q5VV67 1664 aaKnown RBP11.76□□□□□ -0.53
SMAD1-209ENST00000511125 ATP7AQ04656 1500 aa11.76□□□□□ -0.53
SMAD1-209ENST00000511125 ARAP3Q8WWN8 1544 aa11.75□□□□□ -0.53
SMAD1-209ENST00000511125 WASHC2CQ9Y4E1 1318 aa11.74□□□□□ -0.53
SMAD1-209ENST00000511125 CROCC2H7BZ55 1655 aa11.74□□□□□ -0.53
SMAD1-209ENST00000511125 ZFYVE16Q7Z3T8 1539 aa11.73□□□□□ -0.53
SMAD1-209ENST00000511125 RGL3Q3MIN7 710 aa11.73□□□□□ -0.53
SMAD1-209ENST00000511125 SHANK2Q9UPX8 1470 aa11.73□□□□□ -0.53
SMAD1-209ENST00000511125 DHX29Q7Z478 1369 aaKnown RBP11.73□□□□□ -0.53
SMAD1-209ENST00000511125 ADGRL2O95490 1459 aa11.73□□□□□ -0.53
SMAD1-209ENST00000511125 ZNF326Q5BKZ1 582 aaKnown RBP11.73□□□□□ -0.53
SMAD1-209ENST00000511125 CHGAP10645 457 aaKnown RBP11.72□□□□□ -0.53
SMAD1-209ENST00000511125 A2MP01023 1474 aa11.71□□□□□ -0.53
SMAD1-209ENST00000511125 KIDINS220Q9ULH0 1771 aa11.71□□□□□ -0.53
SMAD1-209ENST00000511125 ESF1Q9H501 851 aaKnown RBP11.71□□□□□ -0.54
SMAD1-209ENST00000511125 ADGBQ8N7X0 1667 aa11.71□□□□□ -0.54
SMAD1-209ENST00000511125 CFAP74Q9C0B2 1584 aa11.71□□□□□ -0.54
SMAD1-209ENST00000511125 RTEL1-TNFRSF6BF6WH68 1400 aa11.7□□□□□ -0.54
SMAD1-209ENST00000511125 KDM2AQ9Y2K7 1162 aa11.7□□□□□ -0.54
SMAD1-209ENST00000511125 CEBPAP49715 358 aaPredicted RBP11.7□□□□□ -0.54
SMAD1-209ENST00000511125 FRMPD1Q5SYB0 1578 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms