RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.65■■□□□ 1.381e-6■□□□□ 11.1
SQSTM1-213ENST00000510187 SCAF1Q9H7N4 1312 aaKnown RBP23.65■■□□□ 1.38
SQSTM1-213ENST00000510187 TCOF1Q13428 1488 aaKnown RBP23.63■■□□□ 1.37
SQSTM1-213ENST00000510187 ZNF777Q9ULD5 760 aaPredicted RBP23.63■■□□□ 1.37
SQSTM1-213ENST00000510187 ABCA9Q8IUA7 1624 aa23.63■■□□□ 1.37
SQSTM1-213ENST00000510187 PREX2Q70Z35 1606 aa23.62■■□□□ 1.37
SQSTM1-213ENST00000510187 ITGAEP38570 1179 aa23.62■■□□□ 1.37
SQSTM1-213ENST00000510187 ZNF644Q9H582 1327 aaPredicted RBP23.61■■□□□ 1.37
SQSTM1-213ENST00000510187 MYO5CQ9NQX4 1742 aa23.61■■□□□ 1.37
SQSTM1-213ENST00000510187 PLCH2O75038 1416 aa23.61■■□□□ 1.37
SQSTM1-213ENST00000510187 ARHGAP5Q13017 1502 aa23.59■■□□□ 1.37
SQSTM1-213ENST00000510187 ACIN1Q9UKV3 1341 aaKnown RBP23.58■■□□□ 1.37
SQSTM1-213ENST00000510187 CDC42BPBQ9Y5S2 1711 aa23.58■■□□□ 1.37
SQSTM1-213ENST00000510187 CAMSAP2Q08AD1 1489 aa23.58■■□□□ 1.36
SQSTM1-213ENST00000510187 CENPBP07199 599 aaPredicted RBP23.56■■□□□ 1.36
SQSTM1-213ENST00000510187 CD109Q6YHK3 1445 aa23.54■■□□□ 1.36
SQSTM1-213ENST00000510187 EFCAB2Q5VUJ9 269 aa23.54■■□□□ 1.36
SQSTM1-213ENST00000510187 FAM69CQ0P6D2 419 aa23.53■■□□□ 1.36
SQSTM1-213ENST00000510187 ARAP3Q8WWN8 1544 aa23.53■■□□□ 1.36
SQSTM1-213ENST00000510187 DHX57Q6P158 1386 aaKnown RBP23.52■■□□□ 1.36
SQSTM1-213ENST00000510187 GLI2P10070 1586 aa23.51■■□□□ 1.35
SQSTM1-213ENST00000510187 DIP2BQ9P265 1576 aa23.51■■□□□ 1.35
SQSTM1-213ENST00000510187 SAMD9LQ8IVG5 1584 aa23.51■■□□□ 1.35
SQSTM1-213ENST00000510187 FANCAO15360 1455 aa23.49■■□□□ 1.35
SQSTM1-213ENST00000510187 DAPK1P53355 1430 aa23.46■■□□□ 1.35
SQSTM1-213ENST00000510187 PTPRKQ15262 1439 aa23.46■■□□□ 1.35
SQSTM1-213ENST00000510187 HNRNPMP52272 730 aaKnown RBP eCLIP23.46■■□□□ 1.354e-8■■■■□ 21.3
SQSTM1-213ENST00000510187 PLEKHH2Q8IVE3 1493 aa23.45■■□□□ 1.35
SQSTM1-213ENST00000510187 DNMT1P26358 1616 aaKnown RBP23.45■■□□□ 1.34
SQSTM1-213ENST00000510187 MAP3K4Q9Y6R4 1608 aa23.45■■□□□ 1.34
SQSTM1-213ENST00000510187 ABCC5O15440 1437 aa23.45■■□□□ 1.34
SQSTM1-213ENST00000510187 NEUROD1Q13562 356 aa23.44■■□□□ 1.34
SQSTM1-213ENST00000510187 KIAA1107Q9UPP5 1409 aa23.44■■□□□ 1.34
SQSTM1-213ENST00000510187 SYCP2Q9BX26 1530 aa23.43■■□□□ 1.34
SQSTM1-213ENST00000510187 MBD5Q9P267 1494 aa23.43■■□□□ 1.34
SQSTM1-213ENST00000510187 CHIC2Q9UKJ5 165 aa23.42■■□□□ 1.34
SQSTM1-213ENST00000510187 ABCC1P33527 1531 aa23.41■■□□□ 1.34
SQSTM1-213ENST00000510187 RSPH4AQ5TD94 716 aa23.4■■□□□ 1.34
SQSTM1-213ENST00000510187 ARHGEF5Q12774 1597 aa23.4■■□□□ 1.34
SQSTM1-213ENST00000510187 AKNAQ7Z591 1439 aa23.39■■□□□ 1.34
SQSTM1-213ENST00000510187 ARHGEF12Q9NZN5 1544 aa23.39■■□□□ 1.33
SQSTM1-213ENST00000510187 CFAP74Q9C0B2 1584 aa23.38■■□□□ 1.33
SQSTM1-213ENST00000510187 PELP1Q8IZL8 1130 aaKnown RBP23.38■■□□□ 1.33
SQSTM1-213ENST00000510187 ADGRL1O94910 1474 aa23.38■■□□□ 1.33
SQSTM1-213ENST00000510187 CCDC141Q6ZP82 1450 aa23.38■■□□□ 1.33
SQSTM1-213ENST00000510187 KIF13AQ9H1H9 1805 aa23.38■■□□□ 1.33
SQSTM1-213ENST00000510187 TSPY4P0CV99 314 aa23.36■■□□□ 1.33
SQSTM1-213ENST00000510187 TSPY10P0CW01 314 aa23.36■■□□□ 1.33
SQSTM1-213ENST00000510187 NEO1Q92859 1461 aa23.35■■□□□ 1.33
SQSTM1-213ENST00000510187 SCAPERQ9BY12 1400 aa23.34■■□□□ 1.33
SQSTM1-213ENST00000510187 CROCC2H7BZ55 1655 aa23.34■■□□□ 1.33
SQSTM1-213ENST00000510187 SHANK2Q9UPX8 1470 aa23.33■■□□□ 1.33
SQSTM1-213ENST00000510187 TRAPPC8Q9Y2L5 1435 aa23.33■■□□□ 1.33
SQSTM1-213ENST00000510187 RRP7BPQ9NSQ0 103 aa23.33■■□□□ 1.32
SQSTM1-213ENST00000510187 C9orf84Q5VXU9 1444 aa23.33■■□□□ 1.32
SQSTM1-213ENST00000510187 ROCK1Q13464 1354 aa23.32■■□□□ 1.32
SQSTM1-213ENST00000510187 TSPOAP1O95153 1857 aa23.32■■□□□ 1.32
SQSTM1-213ENST00000510187 HFM1A2PYH4 1435 aa23.31■■□□□ 1.32
SQSTM1-213ENST00000510187 TEX14Q8IWB6 1497 aa23.31■■□□□ 1.32
SQSTM1-213ENST00000510187 SETD5Q9C0A6 1442 aa23.31■■□□□ 1.32
SQSTM1-213ENST00000510187 TRHP20396 242 aaPredicted RBP23.3■■□□□ 1.32
SQSTM1-213ENST00000510187 AFAP1Q8N556 730 aa23.3■■□□□ 1.32
SQSTM1-213ENST00000510187 PPRC1Q5VV67 1664 aaKnown RBP23.29■■□□□ 1.32
SQSTM1-213ENST00000510187 NAIPQ13075 1403 aa23.28■■□□□ 1.32
SQSTM1-213ENST00000510187 ADGRL2O95490 1459 aa23.28■■□□□ 1.32
SQSTM1-213ENST00000510187 ANKRD30AQ9BXX3 1397 aa23.28■■□□□ 1.32
SQSTM1-213ENST00000510187 NCOA1Q15788 1441 aa23.27■■□□□ 1.32
SQSTM1-213ENST00000510187 RAB3GAP2Q9H2M9 1393 aa23.27■■□□□ 1.32
SQSTM1-213ENST00000510187 ADGBQ8N7X0 1667 aa23.26■■□□□ 1.31
SQSTM1-213ENST00000510187 SPAG9O60271 1321 aaKnown RBP23.24■■□□□ 1.31
SQSTM1-213ENST00000510187 MAST1Q9Y2H9 1570 aa23.24■■□□□ 1.31
SQSTM1-213ENST00000510187 ZNF518AQ6AHZ1 1483 aa23.24■■□□□ 1.31
SQSTM1-213ENST00000510187 POGZQ7Z3K3 1410 aa23.23■■□□□ 1.31
SQSTM1-213ENST00000510187 MIER1Q8N108 512 aa23.23■■□□□ 1.31
SQSTM1-213ENST00000510187 DENND4BO75064 1496 aaPredicted RBP23.23■■□□□ 1.31
SQSTM1-213ENST00000510187 GCC2Q8IWJ2 1684 aa23.21■■□□□ 1.31
SQSTM1-213ENST00000510187 RAPGEF3O95398 923 aa23.2■■□□□ 1.3
SQSTM1-213ENST00000510187 MYT1LQ9UL68 1186 aa23.19■■□□□ 1.3
SQSTM1-213ENST00000510187 GTF3C3Q9Y5Q9 886 aa23.19■■□□□ 1.3
SQSTM1-213ENST00000510187 KIF15Q9NS87 1388 aa23.19■■□□□ 1.3
SQSTM1-213ENST00000510187 RTEL1-TNFRSF6BF6WH68 1400 aa23.19■■□□□ 1.3
SQSTM1-213ENST00000510187 ZFYVE16Q7Z3T8 1539 aa23.17■■□□□ 1.3
SQSTM1-213ENST00000510187 KDM5CP41229 1560 aa23.16■■□□□ 1.3
SQSTM1-213ENST00000510187 PLXNC1O60486 1568 aa23.16■■□□□ 1.3
SQSTM1-213ENST00000510187 ATP7AQ04656 1500 aa23.16■■□□□ 1.3
SQSTM1-213ENST00000510187 INO80Q9ULG1 1556 aaPredicted RBP23.14■■□□□ 1.3
SQSTM1-213ENST00000510187 ANKRD50Q9ULJ7 1429 aa23.13■■□□□ 1.29
SQSTM1-213ENST00000510187 KDM6BO15054 1643 aa23.13■■□□□ 1.29
SQSTM1-213ENST00000510187 RICTORQ6R327 1708 aa23.13■■□□□ 1.29
SQSTM1-213ENST00000510187 MLH3Q9UHC1 1453 aa23.12■■□□□ 1.29
SQSTM1-213ENST00000510187 HECW2Q9P2P5 1572 aa23.1■■□□□ 1.29
SQSTM1-213ENST00000510187 FRMPD1Q5SYB0 1578 aa23.1■■□□□ 1.29
SQSTM1-213ENST00000510187 DUOX2Q9NRD8 1548 aa23.09■■□□□ 1.29
SQSTM1-213ENST00000510187 KIDINS220Q9ULH0 1771 aa23.08■■□□□ 1.29
SQSTM1-213ENST00000510187 COL17A1Q9UMD9 1497 aaPredicted RBP23.08■■□□□ 1.28
SQSTM1-213ENST00000510187 TRIM52Q96A61 297 aa23.06■■□□□ 1.28
SQSTM1-213ENST00000510187 ZMYM4Q5VZL5 1548 aa23.04■■□□□ 1.28
SQSTM1-213ENST00000510187 ERBINQ96RT1 1412 aa23.04■■□□□ 1.28
SQSTM1-213ENST00000510187 YTHDC1Q96MU7 727 aaKnown RBP23.02■■□□□ 1.28
SQSTM1-213ENST00000510187 TIMELESSQ9UNS1 1208 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms