RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 SYNJ2O15056 1496 aa25.17■■□□□ 1.62
CCHCR1-228ENST00000509552 TROQ12816 1431 aaPredicted RBP25.15■■□□□ 1.62
CCHCR1-228ENST00000509552 ZNF644Q9H582 1327 aaPredicted RBP25.13■■□□□ 1.61
CCHCR1-228ENST00000509552 CEP170Q5SW79 1584 aa25.13■■□□□ 1.61
CCHCR1-228ENST00000509552 HSPA5P11021 654 aaKnown RBP25.12■■□□□ 1.61
CCHCR1-228ENST00000509552 EIF4G2P78344 907 aaKnown RBP eCLIP25.12■■□□□ 1.61
CCHCR1-228ENST00000509552 CARMIL2Q6F5E8 1435 aa25.11■■□□□ 1.61
CCHCR1-228ENST00000509552 PRG4Q92954 1404 aaPredicted RBP25.1■■□□□ 1.61
CCHCR1-228ENST00000509552 L3MBTL2Q969R5 705 aa25.1■■□□□ 1.61
CCHCR1-228ENST00000509552 FBLN2P98095 1184 aa25.09■■□□□ 1.61
CCHCR1-228ENST00000509552 FOXD1Q16676 465 aa25.09■■□□□ 1.61
CCHCR1-228ENST00000509552 ANKRD30BQ9BXX2 1392 aa25.08■■□□□ 1.61
CCHCR1-228ENST00000509552 ITSN2Q9NZM3 1697 aa25.08■■□□□ 1.61
CCHCR1-228ENST00000509552 CFDP1Q9UEE9 299 aaPredicted RBP25.08■■□□□ 1.61
CCHCR1-228ENST00000509552 PLB1Q6P1J6 1458 aa25.08■■□□□ 1.6
CCHCR1-228ENST00000509552 RPRD2Q5VT52 1461 aaKnown RBP25.07■■□□□ 1.6
CCHCR1-228ENST00000509552 CAMSAP2Q08AD1 1489 aa25.06■■□□□ 1.6
CCHCR1-228ENST00000509552 SLC4A1APQ9BWU0 796 aaKnown RBP25.06■■□□□ 1.6
CCHCR1-228ENST00000509552 WASHC2AQ641Q2 1341 aa25.04■■□□□ 1.6
CCHCR1-228ENST00000509552 JPH4Q96JJ6 628 aa25.04■■□□□ 1.6
CCHCR1-228ENST00000509552 NUP160Q12769 1436 aa25.03■■□□□ 1.6
CCHCR1-228ENST00000509552 ADCY10Q96PN6 1610 aa25.03■■□□□ 1.6
CCHCR1-228ENST00000509552 GPATCH8Q9UKJ3 1502 aaKnown RBP25.02■■□□□ 1.6
CCHCR1-228ENST00000509552 ADGBQ8N7X0 1667 aa24.99■■□□□ 1.59
CCHCR1-228ENST00000509552 NCOA1Q15788 1441 aa24.98■■□□□ 1.59
CCHCR1-228ENST00000509552 KIF14Q15058 1648 aa24.98■■□□□ 1.59
CCHCR1-228ENST00000509552 NEFLP07196 543 aa24.98■■□□□ 1.59
CCHCR1-228ENST00000509552 FKBP8Q14318 412 aa24.98■■□□□ 1.59
CCHCR1-228ENST00000509552 ZNF777Q9ULD5 760 aaPredicted RBP24.97■■□□□ 1.59
CCHCR1-228ENST00000509552 TEX14Q8IWB6 1497 aa24.97■■□□□ 1.59
CCHCR1-228ENST00000509552 ADGRL2O95490 1459 aa24.96■■□□□ 1.59
CCHCR1-228ENST00000509552 CNTLNQ9NXG0 1405 aa24.94■■□□□ 1.58
CCHCR1-228ENST00000509552 PLEKHD1A6NEE1 506 aa24.94■■□□□ 1.58
CCHCR1-228ENST00000509552 ANKRD30AQ9BXX3 1397 aa24.93■■□□□ 1.58
CCHCR1-228ENST00000509552 PZPP20742 1482 aa24.93■■□□□ 1.58
CCHCR1-228ENST00000509552 CROCC2H7BZ55 1655 aa24.92■■□□□ 1.58
CCHCR1-228ENST00000509552 NBPF8Q3BBV2 869 aa24.92■■□□□ 1.58
CCHCR1-228ENST00000509552 CCDC7Q96M83 1385 aa24.9■■□□□ 1.58
CCHCR1-228ENST00000509552 ABCA8O94911 1581 aa24.9■■□□□ 1.58
CCHCR1-228ENST00000509552 BCANQ96GW7 911 aa24.89■■□□□ 1.58
CCHCR1-228ENST00000509552 KIAA1107Q9UPP5 1409 aa24.87■■□□□ 1.57
CCHCR1-228ENST00000509552 HNRNPUQ00839 825 aaKnown RBP eCLIP24.85■■□□□ 1.57
CCHCR1-228ENST00000509552 ATP10BO94823 1461 aa24.84■■□□□ 1.57
CCHCR1-228ENST00000509552 C11orf95C9JLR9 678 aaPredicted RBP24.84■■□□□ 1.57
CCHCR1-228ENST00000509552 ANKRD50Q9ULJ7 1429 aa24.84■■□□□ 1.57
CCHCR1-228ENST00000509552 TSHZ2Q9NRE2 1034 aa24.83■■□□□ 1.57
CCHCR1-228ENST00000509552 CDC42BPAQ5VT25 1732 aa24.83■■□□□ 1.57
CCHCR1-228ENST00000509552 ABCC10Q5T3U5 1492 aa24.83■■□□□ 1.57
CCHCR1-228ENST00000509552 SPATA31E1Q6ZUB1 1445 aa24.83■■□□□ 1.57
CCHCR1-228ENST00000509552 SHANK2Q9UPX8 1470 aa24.82■■□□□ 1.56
CCHCR1-228ENST00000509552 MYT1Q01538 1121 aa24.82■■□□□ 1.56
CCHCR1-228ENST00000509552 PKD2Q13563 968 aa24.81■■□□□ 1.56
CCHCR1-228ENST00000509552 C9orf84Q5VXU9 1444 aa24.78■■□□□ 1.56
CCHCR1-228ENST00000509552 TSPY4P0CV99 314 aa24.78■■□□□ 1.56
CCHCR1-228ENST00000509552 TSPY10P0CW01 314 aa24.78■■□□□ 1.56
CCHCR1-228ENST00000509552 PRKRIP1Q9H875 184 aaPredicted RBP24.78■■□□□ 1.56
CCHCR1-228ENST00000509552 POLR1AO95602 1720 aaPredicted RBP24.78■■□□□ 1.56
CCHCR1-228ENST00000509552 KIF7Q2M1P5 1343 aa24.77■■□□□ 1.56
CCHCR1-228ENST00000509552 MBD5Q9P267 1494 aa24.77■■□□□ 1.56
CCHCR1-228ENST00000509552 PTPRGP23470 1445 aa24.74■■□□□ 1.55
CCHCR1-228ENST00000509552 NUP155O75694 1391 aa24.73■■□□□ 1.55
CCHCR1-228ENST00000509552 ZNF326Q5BKZ1 582 aaKnown RBP24.69■■□□□ 1.54
CCHCR1-228ENST00000509552 MRS2Q9HD23 443 aa24.69■■□□□ 1.54
CCHCR1-228ENST00000509552 ARHGEF5Q12774 1597 aa24.69■■□□□ 1.54
CCHCR1-228ENST00000509552 KDM5DQ9BY66 1539 aa24.68■■□□□ 1.54
CCHCR1-228ENST00000509552 USP47Q96K76 1375 aa24.68■■□□□ 1.54
CCHCR1-228ENST00000509552 CCDC184Q52MB2 194 aa24.68■■□□□ 1.54
CCHCR1-228ENST00000509552 KIF15Q9NS87 1388 aa24.67■■□□□ 1.54
CCHCR1-228ENST00000509552 HNRNPMP52272 730 aaKnown RBP eCLIP24.67■■□□□ 1.54
CCHCR1-228ENST00000509552 FAM9BQ8IZU0 186 aa24.64■■□□□ 1.53
CCHCR1-228ENST00000509552 UHRF1BP1Q6BDS2 1440 aa24.64■■□□□ 1.53
CCHCR1-228ENST00000509552 ARID4BQ4LE39 1312 aaPredicted RBP24.63■■□□□ 1.53
CCHCR1-228ENST00000509552 RSPH4AQ5TD94 716 aa24.63■■□□□ 1.53
CCHCR1-228ENST00000509552 CCDC141Q6ZP82 1450 aa24.62■■□□□ 1.53
CCHCR1-228ENST00000509552 ARHGEF12Q9NZN5 1544 aa24.62■■□□□ 1.53
CCHCR1-228ENST00000509552 KDM5CP41229 1560 aa24.6■■□□□ 1.53
CCHCR1-228ENST00000509552 PREX2Q70Z35 1606 aa24.6■■□□□ 1.53
CCHCR1-228ENST00000509552 RALGAPBQ86X10 1494 aa24.6■■□□□ 1.53
CCHCR1-228ENST00000509552 SAMD9LQ8IVG5 1584 aa24.58■■□□□ 1.53
CCHCR1-228ENST00000509552 BCORL1Q5H9F3 1711 aa24.57■■□□□ 1.52
CCHCR1-228ENST00000509552 CDC42BPBQ9Y5S2 1711 aa24.57■■□□□ 1.52
CCHCR1-228ENST00000509552 ZBED9Q6R2W3 1325 aa24.56■■□□□ 1.52
CCHCR1-228ENST00000509552 POLR3GLQ9BT43 218 aa24.56■■□□□ 1.52
CCHCR1-228ENST00000509552 CARD11Q9BXL7 1154 aa24.55■■□□□ 1.52
CCHCR1-228ENST00000509552 CHD1O14646 1710 aa24.54■■□□□ 1.52
CCHCR1-228ENST00000509552 ROCK2O75116 1388 aaKnown RBP24.54■■□□□ 1.52
CCHCR1-228ENST00000509552 DHX29Q7Z478 1369 aaKnown RBP24.54■■□□□ 1.52
CCHCR1-228ENST00000509552 ERICH6BQ5W0A0 696 aa24.53■■□□□ 1.52
CCHCR1-228ENST00000509552 FAM135AQ9P2D6 1515 aa24.51■■□□□ 1.51
CCHCR1-228ENST00000509552 KDM2AQ9Y2K7 1162 aa24.5■■□□□ 1.51
CCHCR1-228ENST00000509552 DCAF11Q8TEB1 546 aa24.5■■□□□ 1.51
CCHCR1-228ENST00000509552 SHROOM2Q13796 1616 aa24.5■■□□□ 1.51
CCHCR1-228ENST00000509552 ARHGAP5Q13017 1502 aa24.49■■□□□ 1.51
CCHCR1-228ENST00000509552 IRX6P78412 446 aaPredicted RBP24.48■■□□□ 1.51
CCHCR1-228ENST00000509552 SYCP2Q9BX26 1530 aa24.47■■□□□ 1.51
CCHCR1-228ENST00000509552 MAST1Q9Y2H9 1570 aa24.47■■□□□ 1.51
CCHCR1-228ENST00000509552 TTC37Q6PGP7 1564 aa24.46■■□□□ 1.51
CCHCR1-228ENST00000509552 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.45■■□□□ 1.51e-5■■■■□ 25.8
CCHCR1-228ENST00000509552 PLEKHH2Q8IVE3 1493 aa24.44■■□□□ 1.5
CCHCR1-228ENST00000509552 CCDC144AA2RUR9 1427 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms