RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 KCNH8Q96L42 1107 aa21.51■■□□□ 1.03
PHF3-209ENST00000509330 CAMSAP2Q08AD1 1489 aa21.5■■□□□ 1.03
PHF3-209ENST00000509330 YTHDC1Q96MU7 727 aaKnown RBP21.47■■□□□ 1.03
PHF3-209ENST00000509330 TONSLQ96HA7 1378 aa21.45■■□□□ 1.02
PHF3-209ENST00000509330 HNRNPMP52272 730 aaKnown RBP eCLIP21.44■■□□□ 1.024e-7■■■■□ 20.1
PHF3-209ENST00000509330 MPHOSPH9Q99550 1183 aa21.43■■□□□ 1.02
PHF3-209ENST00000509330 DNMT1P26358 1616 aaKnown RBP21.42■■□□□ 1.02
PHF3-209ENST00000509330 SHROOM2Q13796 1616 aa21.41■■□□□ 1.02
PHF3-209ENST00000509330 GCC2Q8IWJ2 1684 aa21.4■■□□□ 1.02
PHF3-209ENST00000509330 ITSN2Q9NZM3 1697 aa21.39■■□□□ 1.01
PHF3-209ENST00000509330 ABCC10Q5T3U5 1492 aa21.39■■□□□ 1.01
PHF3-209ENST00000509330 ADCY10Q96PN6 1610 aa21.39■■□□□ 1.01
PHF3-209ENST00000509330 PPP1R15AO75807 674 aaPredicted RBP21.39■■□□□ 1.01
PHF3-209ENST00000509330 AKNAQ7Z591 1439 aa21.37■■□□□ 1.01
PHF3-209ENST00000509330 SLC4A1APQ9BWU0 796 aaKnown RBP21.37■■□□□ 1.01
PHF3-209ENST00000509330 DENND4BO75064 1496 aaPredicted RBP21.37■■□□□ 1.01
PHF3-209ENST00000509330 CDC42BPAQ5VT25 1732 aa21.36■■□□□ 1.01
PHF3-209ENST00000509330 CLASP1Q7Z460 1538 aa21.35■■□□□ 1.01
PHF3-209ENST00000509330 ROCK1Q13464 1354 aa21.35■■□□□ 1.01
PHF3-209ENST00000509330 TSPY4P0CV99 314 aa21.33■■□□□ 1.01
PHF3-209ENST00000509330 TSPY10P0CW01 314 aa21.33■■□□□ 1.01
PHF3-209ENST00000509330 NCOA1Q15788 1441 aa21.33■■□□□ 1
PHF3-209ENST00000509330 ABCC2Q92887 1545 aa21.32■■□□□ 1
PHF3-209ENST00000509330 ANKRD30AQ9BXX3 1397 aa21.29■■□□□ 1
PHF3-209ENST00000509330 TIMELESSQ9UNS1 1208 aa21.28■■□□□ 1
PHF3-209ENST00000509330 C9orf84Q5VXU9 1444 aa21.28■■□□□ 1
PHF3-209ENST00000509330 TTC37Q6PGP7 1564 aa21.27■■□□□ 1
PHF3-209ENST00000509330 DDX10Q13206 875 aaKnown RBP21.26■□□□□ 0.99
PHF3-209ENST00000509330 ARHGAP5Q13017 1502 aa21.26■□□□□ 0.99
PHF3-209ENST00000509330 ANKRD50Q9ULJ7 1429 aa21.24■□□□□ 0.99
PHF3-209ENST00000509330 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.24■□□□□ 0.99
PHF3-209ENST00000509330 L3MBTL2Q969R5 705 aa21.23■□□□□ 0.99
PHF3-209ENST00000509330 SAMD9LQ8IVG5 1584 aa21.22■□□□□ 0.99
PHF3-209ENST00000509330 PKD2Q13563 968 aa21.21■□□□□ 0.99
PHF3-209ENST00000509330 CDC42BPBQ9Y5S2 1711 aa21.21■□□□□ 0.99
PHF3-209ENST00000509330 KIF15Q9NS87 1388 aa21.21■□□□□ 0.99
PHF3-209ENST00000509330 ZCCHC11Q5TAX3 1644 aaKnown RBP21.2■□□□□ 0.98
PHF3-209ENST00000509330 CROCC2H7BZ55 1655 aa21.2■□□□□ 0.98
PHF3-209ENST00000509330 OSCARQ8IYS5 282 aa21.2■□□□□ 0.98
PHF3-209ENST00000509330 SYCP2Q9BX26 1530 aa21.19■□□□□ 0.98
PHF3-209ENST00000509330 MBD5Q9P267 1494 aa21.19■□□□□ 0.98
PHF3-209ENST00000509330 NUP155O75694 1391 aa21.19■□□□□ 0.98
PHF3-209ENST00000509330 ADGBQ8N7X0 1667 aa21.19■□□□□ 0.98
PHF3-209ENST00000509330 ADGRL2O95490 1459 aa21.18■□□□□ 0.98
PHF3-209ENST00000509330 ANKRD30BQ9BXX2 1392 aa21.18■□□□□ 0.98
PHF3-209ENST00000509330 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.18■□□□□ 0.985e-8■■□□□ 12.5
PHF3-209ENST00000509330 PZPP20742 1482 aa21.18■□□□□ 0.98
PHF3-209ENST00000509330 PREX2Q70Z35 1606 aa21.17■□□□□ 0.98
PHF3-209ENST00000509330 ZNF326Q5BKZ1 582 aaKnown RBP21.16■□□□□ 0.98
PHF3-209ENST00000509330 ACIN1Q9UKV3 1341 aaKnown RBP21.15■□□□□ 0.98
PHF3-209ENST00000509330 CENPBP07199 599 aaPredicted RBP21.15■□□□□ 0.98
PHF3-209ENST00000509330 CCDC141Q6ZP82 1450 aa21.15■□□□□ 0.98
PHF3-209ENST00000509330 KDM5BQ9UGL1 1544 aa21.14■□□□□ 0.98
PHF3-209ENST00000509330 SCAF1Q9H7N4 1312 aaKnown RBP21.14■□□□□ 0.97
PHF3-209ENST00000509330 SHANK2Q9UPX8 1470 aa21.11■□□□□ 0.97
PHF3-209ENST00000509330 EFCAB2Q5VUJ9 269 aa21.1■□□□□ 0.97
PHF3-209ENST00000509330 UHRF1BP1LA0JNW5 1464 aa21.1■□□□□ 0.97
PHF3-209ENST00000509330 NBPF8Q3BBV2 869 aa21.09■□□□□ 0.97
PHF3-209ENST00000509330 ARHGEF12Q9NZN5 1544 aa21.09■□□□□ 0.97
PHF3-209ENST00000509330 MYT1LQ9UL68 1186 aa21.08■□□□□ 0.97
PHF3-209ENST00000509330 MYO5CQ9NQX4 1742 aa21.08■□□□□ 0.97
PHF3-209ENST00000509330 AFAP1Q8N556 730 aa21.08■□□□□ 0.96
PHF3-209ENST00000509330 RPRD2Q5VT52 1461 aaKnown RBP21.07■□□□□ 0.96
PHF3-209ENST00000509330 HSPA5P11021 654 aaKnown RBP21.07■□□□□ 0.96
PHF3-209ENST00000509330 ARHGEF5Q12774 1597 aa21.07■□□□□ 0.96
PHF3-209ENST00000509330 PLCH2O75038 1416 aa21.06■□□□□ 0.96
PHF3-209ENST00000509330 KIAA1107Q9UPP5 1409 aa21.06■□□□□ 0.96
PHF3-209ENST00000509330 RSPH4AQ5TD94 716 aa21.04■□□□□ 0.96
PHF3-209ENST00000509330 TRAPPC8Q9Y2L5 1435 aa21.03■□□□□ 0.96
PHF3-209ENST00000509330 KDM2AQ9Y2K7 1162 aa21.02■□□□□ 0.96
PHF3-209ENST00000509330 WDR7Q9Y4E6 1490 aa21.02■□□□□ 0.95
PHF3-209ENST00000509330 NPM1P06748 294 aaKnown RBP eCLIP21.01■□□□□ 0.95
PHF3-209ENST00000509330 TEX14Q8IWB6 1497 aa21■□□□□ 0.95
PHF3-209ENST00000509330 PLEKHH2Q8IVE3 1493 aa21■□□□□ 0.95
PHF3-209ENST00000509330 EIF4G2P78344 907 aaKnown RBP eCLIP21■□□□□ 0.95
PHF3-209ENST00000509330 ASXL2Q76L83 1435 aa20.99■□□□□ 0.95
PHF3-209ENST00000509330 SPAG9O60271 1321 aaKnown RBP20.97■□□□□ 0.95
PHF3-209ENST00000509330 GTF3C3Q9Y5Q9 886 aa20.97■□□□□ 0.95
PHF3-209ENST00000509330 RGL3Q3MIN7 710 aa20.95■□□□□ 0.94
PHF3-209ENST00000509330 WASHC2AQ641Q2 1341 aa20.93■□□□□ 0.94
PHF3-209ENST00000509330 ABCC1P33527 1531 aa20.93■□□□□ 0.94
PHF3-209ENST00000509330 FANCAO15360 1455 aa20.93■□□□□ 0.94
PHF3-209ENST00000509330 POLR3GLQ9BT43 218 aa20.93■□□□□ 0.94
PHF3-209ENST00000509330 FAM135AQ9P2D6 1515 aa20.93■□□□□ 0.94
PHF3-209ENST00000509330 C11orf95C9JLR9 678 aaPredicted RBP20.92■□□□□ 0.94
PHF3-209ENST00000509330 DCAF11Q8TEB1 546 aa20.91■□□□□ 0.94
PHF3-209ENST00000509330 CYB5RLQ6IPT4 315 aa20.91■□□□□ 0.94
PHF3-209ENST00000509330 ANP32CO43423 234 aa20.89■□□□□ 0.94
PHF3-209ENST00000509330 CNGB1Q14028 1251 aaPredicted RBP20.89■□□□□ 0.94
PHF3-209ENST00000509330 SCAPERQ9BY12 1400 aa20.88■□□□□ 0.93
PHF3-209ENST00000509330 MAST1Q9Y2H9 1570 aa20.86■□□□□ 0.93
PHF3-209ENST00000509330 ADGRL1O94910 1474 aa20.86■□□□□ 0.93
PHF3-209ENST00000509330 KDM5DQ9BY66 1539 aa20.85■□□□□ 0.93
PHF3-209ENST00000509330 DUOX2Q9NRD8 1548 aa20.84■□□□□ 0.93
PHF3-209ENST00000509330 CCDC144AA2RUR9 1427 aa20.83■□□□□ 0.93
PHF3-209ENST00000509330 PLXNC1O60486 1568 aa20.82■□□□□ 0.92
PHF3-209ENST00000509330 KIF3BO15066 747 aa20.82■□□□□ 0.92
PHF3-209ENST00000509330 ABCA9Q8IUA7 1624 aa20.8■□□□□ 0.92
PHF3-209ENST00000509330 CARD11Q9BXL7 1154 aa20.8■□□□□ 0.92
PHF3-209ENST00000509330 ERBINQ96RT1 1412 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms