RNA–Protein interactions for RNA: ENST00000509101.1

CXCL1-202, Transcript of C-X-C motif chemokine ligand 1, humanhuman

TSL 3

Gene CXCL1, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-202ENST00000509101 SCAPERQ9BY12 1400 aa26.75■■□□□ 1.87
CXCL1-202ENST00000509101 HSPA2P54652 639 aa26.75■■□□□ 1.87
CXCL1-202ENST00000509101 MLECQ14165 292 aa26.73■■□□□ 1.87
CXCL1-202ENST00000509101 KIF14Q15058 1648 aa26.72■■□□□ 1.87
CXCL1-202ENST00000509101 FMN1Q68DA7 1419 aa26.68■■□□□ 1.86
CXCL1-202ENST00000509101 EHMT2Q96KQ7 1210 aa26.68■■□□□ 1.86
CXCL1-202ENST00000509101 PREX1Q8TCU6 1659 aa26.68■■□□□ 1.86
CXCL1-202ENST00000509101 ARHGEF12Q9NZN5 1544 aa26.68■■□□□ 1.86
CXCL1-202ENST00000509101 LRRIQ1Q96JM4 1722 aa26.68■■□□□ 1.86
CXCL1-202ENST00000509101 C9orf84Q5VXU9 1444 aa26.67■■□□□ 1.86
CXCL1-202ENST00000509101 ATP1B4Q9UN42 357 aaPredicted RBP26.67■■□□□ 1.86
CXCL1-202ENST00000509101 ATP10AO60312 1499 aa26.66■■□□□ 1.86
CXCL1-202ENST00000509101 ARHGAP35Q9NRY4 1499 aa26.66■■□□□ 1.86
CXCL1-202ENST00000509101 ARHGAP5Q13017 1502 aa26.62■■□□□ 1.85
CXCL1-202ENST00000509101 UBTFP17480 764 aaKnown RBP26.61■■□□□ 1.85
CXCL1-202ENST00000509101 EFCAB2Q5VUJ9 269 aa26.61■■□□□ 1.85
CXCL1-202ENST00000509101 KDM5CP41229 1560 aa26.61■■□□□ 1.85
CXCL1-202ENST00000509101 ZNF518AQ6AHZ1 1483 aa26.61■■□□□ 1.85
CXCL1-202ENST00000509101 TROQ12816 1431 aaPredicted RBP26.58■■□□□ 1.85
CXCL1-202ENST00000509101 CDC42BPBQ9Y5S2 1711 aa26.57■■□□□ 1.84
CXCL1-202ENST00000509101 CDK11AQ9UQ88 783 aaPredicted RBP26.57■■□□□ 1.84
CXCL1-202ENST00000509101 DIP2CQ9Y2E4 1556 aa26.57■■□□□ 1.84
CXCL1-202ENST00000509101 CLIP1P30622 1438 aa26.55■■□□□ 1.84
CXCL1-202ENST00000509101 ABCA6Q8N139 1617 aa26.54■■□□□ 1.84
CXCL1-202ENST00000509101 PREX2Q70Z35 1606 aa26.53■■□□□ 1.84
CXCL1-202ENST00000509101 CERKQ8TCT0 537 aa26.52■■□□□ 1.84
CXCL1-202ENST00000509101 STRCQ7RTU9 1775 aa26.51■■□□□ 1.83
CXCL1-202ENST00000509101 REREQ9P2R6 1566 aa26.5■■□□□ 1.83
CXCL1-202ENST00000509101 CEBPAP49715 358 aaPredicted RBP26.5■■□□□ 1.83
CXCL1-202ENST00000509101 AFAP1Q8N556 730 aa26.49■■□□□ 1.83
CXCL1-202ENST00000509101 ITSN2Q9NZM3 1697 aa26.49■■□□□ 1.83
CXCL1-202ENST00000509101 C3P01024 1663 aa26.48■■□□□ 1.83
CXCL1-202ENST00000509101 MYT1LQ9UL68 1186 aa26.47■■□□□ 1.83
CXCL1-202ENST00000509101 ABCC1P33527 1531 aa26.47■■□□□ 1.83
CXCL1-202ENST00000509101 UHRF1BP1Q6BDS2 1440 aa26.46■■□□□ 1.83
CXCL1-202ENST00000509101 SETD1BQ9UPS6 1966 aaKnown RBP26.45■■□□□ 1.82
CXCL1-202ENST00000509101 CDC42BPAQ5VT25 1732 aa26.43■■□□□ 1.82
CXCL1-202ENST00000509101 MLH3Q9UHC1 1453 aa26.42■■□□□ 1.82
CXCL1-202ENST00000509101 CCDC18Q5T9S5 1454 aa26.41■■□□□ 1.82
CXCL1-202ENST00000509101 KIDINS220Q9ULH0 1771 aa26.4■■□□□ 1.82
CXCL1-202ENST00000509101 TRAPPC8Q9Y2L5 1435 aa26.39■■□□□ 1.82
CXCL1-202ENST00000509101 AGLP35573 1532 aa26.39■■□□□ 1.81
CXCL1-202ENST00000509101 CASKIN1Q8WXD9 1431 aa26.37■■□□□ 1.81
CXCL1-202ENST00000509101 CHIC1Q5VXU3 224 aa26.33■■□□□ 1.81
CXCL1-202ENST00000509101 DMRT2Q9Y5R5 561 aa26.32■■□□□ 1.8
CXCL1-202ENST00000509101 SAMD9LQ8IVG5 1584 aa26.29■■□□□ 1.8
CXCL1-202ENST00000509101 ESF1Q9H501 851 aaKnown RBP26.29■■□□□ 1.8
CXCL1-202ENST00000509101 FYCO1Q9BQS8 1478 aa26.29■■□□□ 1.8
CXCL1-202ENST00000509101 MROH2AA6NES4 1674 aa26.28■■□□□ 1.8
CXCL1-202ENST00000509101 PTPRTO14522 1441 aa26.27■■□□□ 1.8
CXCL1-202ENST00000509101 SYCP2Q9BX26 1530 aa26.27■■□□□ 1.8
CXCL1-202ENST00000509101 SUPT6HQ7KZ85 1726 aaKnown RBP26.26■■□□□ 1.79
CXCL1-202ENST00000509101 CNTLNQ9NXG0 1405 aa26.25■■□□□ 1.79
CXCL1-202ENST00000509101 NCOA1Q15788 1441 aa26.21■■□□□ 1.79
CXCL1-202ENST00000509101 ZNF777Q9ULD5 760 aaPredicted RBP26.2■■□□□ 1.78
CXCL1-202ENST00000509101 LTBP4Q8N2S1 1624 aa26.2■■□□□ 1.78
CXCL1-202ENST00000509101 CLTCQ00610 1675 aaKnown RBP26.19■■□□□ 1.78
CXCL1-202ENST00000509101 INO80Q9ULG1 1556 aaPredicted RBP26.19■■□□□ 1.78
CXCL1-202ENST00000509101 ATP7AQ04656 1500 aa26.19■■□□□ 1.78
CXCL1-202ENST00000509101 CAMSAP1Q5T5Y3 1602 aa26.18■■□□□ 1.78
CXCL1-202ENST00000509101 GPATCH8Q9UKJ3 1502 aaKnown RBP26.18■■□□□ 1.78
CXCL1-202ENST00000509101 DISP3Q9P2K9 1392 aa26.18■■□□□ 1.78
CXCL1-202ENST00000509101 PLXNC1O60486 1568 aa26.16■■□□□ 1.78
CXCL1-202ENST00000509101 MYO3AQ8NEV4 1616 aa26.15■■□□□ 1.78
CXCL1-202ENST00000509101 ZNF142P52746 1687 aaPredicted RBP26.15■■□□□ 1.78
CXCL1-202ENST00000509101 NPATQ14207 1427 aa26.14■■□□□ 1.78
CXCL1-202ENST00000509101 SPATA31D1Q6ZQQ2 1576 aa26.14■■□□□ 1.78
CXCL1-202ENST00000509101 SPAG9O60271 1321 aaKnown RBP26.14■■□□□ 1.77
CXCL1-202ENST00000509101 HNRNPMP52272 730 aaKnown RBP eCLIP26.11■■□□□ 1.77
CXCL1-202ENST00000509101 IQSEC2Q5JU85 1478 aa26.11■■□□□ 1.77
CXCL1-202ENST00000509101 PLEKHH2Q8IVE3 1493 aa26.1■■□□□ 1.77
CXCL1-202ENST00000509101 ZMYM3Q14202 1370 aa26.09■■□□□ 1.77
CXCL1-202ENST00000509101 A2MP01023 1474 aa26.09■■□□□ 1.77
CXCL1-202ENST00000509101 ADGBQ8N7X0 1667 aa26.09■■□□□ 1.77
CXCL1-202ENST00000509101 ILDR2Q71H61 639 aa26.08■■□□□ 1.77
CXCL1-202ENST00000509101 KIAA1107Q9UPP5 1409 aa26.07■■□□□ 1.76
CXCL1-202ENST00000509101 CEP170BQ9Y4F5 1589 aaPredicted RBP26.06■■□□□ 1.76
CXCL1-202ENST00000509101 CCNB3Q8WWL7 1395 aa26.06■■□□□ 1.76
CXCL1-202ENST00000509101 CFDP1Q9UEE9 299 aaPredicted RBP26.04■■□□□ 1.76
CXCL1-202ENST00000509101 TIAM1Q13009 1591 aa26.03■■□□□ 1.76
CXCL1-202ENST00000509101 PTPRKQ15262 1439 aa26.01■■□□□ 1.75
CXCL1-202ENST00000509101 MTUS2Q5JR59 1369 aa26.01■■□□□ 1.75
CXCL1-202ENST00000509101 NCKAP5LQ9HCH0 1330 aa26.01■■□□□ 1.75
CXCL1-202ENST00000509101 PLA2R1Q13018 1463 aa25.99■■□□□ 1.75
CXCL1-202ENST00000509101 GGT6Q6P531 493 aa25.98■■□□□ 1.75
CXCL1-202ENST00000509101 ZNF335Q9H4Z2 1342 aaPredicted RBP25.97■■□□□ 1.75
CXCL1-202ENST00000509101 EHBP1L1Q8N3D4 1523 aa25.97■■□□□ 1.75
CXCL1-202ENST00000509101 TCOF1Q13428 1488 aaKnown RBP25.97■■□□□ 1.75
CXCL1-202ENST00000509101 SOCS7O14512 581 aa25.95■■□□□ 1.74
CXCL1-202ENST00000509101 POLR1AO95602 1720 aaPredicted RBP25.92■■□□□ 1.74
CXCL1-202ENST00000509101 ZNF644Q9H582 1327 aaPredicted RBP25.91■■□□□ 1.74
CXCL1-202ENST00000509101 PKD2Q13563 968 aa25.91■■□□□ 1.74
CXCL1-202ENST00000509101 DNMT1P26358 1616 aaKnown RBP25.91■■□□□ 1.74
CXCL1-202ENST00000509101 MBD5Q9P267 1494 aa25.91■■□□□ 1.74
CXCL1-202ENST00000509101 A2ML1A8K2U0 1454 aa25.89■■□□□ 1.73
CXCL1-202ENST00000509101 UBAP1LF5GYI3 381 aa25.87■■□□□ 1.73
CXCL1-202ENST00000509101 RTEL1-TNFRSF6BF6WH68 1400 aa25.86■■□□□ 1.73
CXCL1-202ENST00000509101 PPP6R1Q9UPN7 881 aa25.85■■□□□ 1.73
CXCL1-202ENST00000509101 CEP162Q5TB80 1403 aa25.85■■□□□ 1.73
CXCL1-202ENST00000509101 KDM5DQ9BY66 1539 aa25.83■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms