RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 B4GALNT3Q6L9W6 998 aa24.2■■□□□ 1.46
NUP54-205ENST00000507257 NOP58Q9Y2X3 529 aaKnown RBP24.2■■□□□ 1.46
NUP54-205ENST00000507257 C11orf95C9JLR9 678 aaPredicted RBP24.2■■□□□ 1.46
NUP54-205ENST00000507257 ANKRD30BQ9BXX2 1392 aa24.19■■□□□ 1.46
NUP54-205ENST00000507257 RRP7BPQ9NSQ0 103 aa24.18■■□□□ 1.46
NUP54-205ENST00000507257 DEKP35659 375 aaKnown RBP24.18■■□□□ 1.46
NUP54-205ENST00000507257 FAM9BQ8IZU0 186 aa24.17■■□□□ 1.46
NUP54-205ENST00000507257 NESP48681 1621 aa24.14■■□□□ 1.46
NUP54-205ENST00000507257 GAPVD1Q14C86 1478 aa24.14■■□□□ 1.46
NUP54-205ENST00000507257 KIF7Q2M1P5 1343 aa24.14■■□□□ 1.45
NUP54-205ENST00000507257 LAMC3Q9Y6N6 1575 aa24.13■■□□□ 1.45
NUP54-205ENST00000507257 EPRSP07814 1512 aaKnown RBP24.13■■□□□ 1.45
NUP54-205ENST00000507257 URB2Q14146 1524 aaKnown RBP24.11■■□□□ 1.45
NUP54-205ENST00000507257 NUDCQ9Y266 331 aa24.1■■□□□ 1.45
NUP54-205ENST00000507257 DNMT1P26358 1616 aaKnown RBP24.09■■□□□ 1.45
NUP54-205ENST00000507257 NBPF8Q3BBV2 869 aa24.09■■□□□ 1.45
NUP54-205ENST00000507257 ARID4BQ4LE39 1312 aaPredicted RBP24.09■■□□□ 1.45
NUP54-205ENST00000507257 DHX29Q7Z478 1369 aaKnown RBP24.08■■□□□ 1.45
NUP54-205ENST00000507257 CHIC2Q9UKJ5 165 aa24.07■■□□□ 1.44
NUP54-205ENST00000507257 MBD5Q9P267 1494 aa24.06■■□□□ 1.44
NUP54-205ENST00000507257 WDR62O43379 1518 aa24.06■■□□□ 1.44
NUP54-205ENST00000507257 DAPK1P53355 1430 aa24.05■■□□□ 1.44
NUP54-205ENST00000507257 IPO9Q96P70 1041 aaKnown RBP24.02■■□□□ 1.44
NUP54-205ENST00000507257 ANP32AP39687 249 aaKnown RBP24.02■■□□□ 1.44
NUP54-205ENST00000507257 IQGAP2Q13576 1575 aa24■■□□□ 1.43
NUP54-205ENST00000507257 TDRD9Q8NDG6 1382 aaKnown RBP24■■□□□ 1.43
NUP54-205ENST00000507257 KIF14Q15058 1648 aa23.99■■□□□ 1.43
NUP54-205ENST00000507257 ABCC5O15440 1437 aa23.98■■□□□ 1.43
NUP54-205ENST00000507257 PAK3O75914 559 aaPredicted RBP23.98■■□□□ 1.43
NUP54-205ENST00000507257 ROCK2O75116 1388 aaKnown RBP23.97■■□□□ 1.43
NUP54-205ENST00000507257 CCDC136Q96JN2 1154 aa23.97■■□□□ 1.43
NUP54-205ENST00000507257 BCORL1Q5H9F3 1711 aa23.96■■□□□ 1.43
NUP54-205ENST00000507257 CDK13Q14004 1512 aaKnown RBP23.96■■□□□ 1.43
NUP54-205ENST00000507257 KDM5CP41229 1560 aa23.95■■□□□ 1.42
NUP54-205ENST00000507257 TARBP1Q13395 1621 aaKnown RBP23.94■■□□□ 1.42
NUP54-205ENST00000507257 PZPP20742 1482 aa23.93■■□□□ 1.42
NUP54-205ENST00000507257 FOXD1Q16676 465 aa23.92■■□□□ 1.42
NUP54-205ENST00000507257 KTN1Q86UP2 1357 aaKnown RBP23.92■■□□□ 1.42
NUP54-205ENST00000507257 ADGBQ8N7X0 1667 aa23.91■■□□□ 1.42
NUP54-205ENST00000507257 PBRM1Q86U86 1689 aa23.9■■□□□ 1.42
NUP54-205ENST00000507257 USP47Q96K76 1375 aa23.9■■□□□ 1.42
NUP54-205ENST00000507257 ZBTB47Q9UFB7 747 aaPredicted RBP23.9■■□□□ 1.42
NUP54-205ENST00000507257 LRPPRCP42704 1394 aaKnown RBP23.89■■□□□ 1.42
NUP54-205ENST00000507257 PNISRQ8TF01 805 aaKnown RBP23.89■■□□□ 1.42
NUP54-205ENST00000507257 SLC4A1APQ9BWU0 796 aaKnown RBP23.89■■□□□ 1.42
NUP54-205ENST00000507257 UHRF1BP1Q6BDS2 1440 aa23.89■■□□□ 1.41
NUP54-205ENST00000507257 KIAA1107Q9UPP5 1409 aa23.86■■□□□ 1.41
NUP54-205ENST00000507257 RTL5Q5HYW3 569 aaPredicted RBP23.86■■□□□ 1.41
NUP54-205ENST00000507257 ADAMTS12P58397 1594 aa23.86■■□□□ 1.41
NUP54-205ENST00000507257 NBR1Q14596 966 aa23.86■■□□□ 1.41
NUP54-205ENST00000507257 ADGRL2O95490 1459 aa23.85■■□□□ 1.41
NUP54-205ENST00000507257 RALGAPBQ86X10 1494 aa23.85■■□□□ 1.41
NUP54-205ENST00000507257 BRD4O60885 1362 aaPredicted RBP23.83■■□□□ 1.41
NUP54-205ENST00000507257 PDS5BQ9NTI5 1447 aa23.83■■□□□ 1.41
NUP54-205ENST00000507257 KIF15Q9NS87 1388 aa23.82■■□□□ 1.4
NUP54-205ENST00000507257 ARHGEF12Q9NZN5 1544 aa23.82■■□□□ 1.4
NUP54-205ENST00000507257 ITSN2Q9NZM3 1697 aa23.81■■□□□ 1.4
NUP54-205ENST00000507257 TCERG1O14776 1098 aaKnown RBP23.8■■□□□ 1.4
NUP54-205ENST00000507257 E9PCH4 1651 aa23.8■■□□□ 1.4
NUP54-205ENST00000507257 CROCC2H7BZ55 1655 aa23.8■■□□□ 1.4
NUP54-205ENST00000507257 USP35Q9P2H5 1018 aa23.79■■□□□ 1.4
NUP54-205ENST00000507257 MS4A1P11836 297 aa23.76■■□□□ 1.39
NUP54-205ENST00000507257 TMC1Q8TDI8 760 aa23.76■■□□□ 1.39
NUP54-205ENST00000507257 KIAA0556O60303 1618 aa23.75■■□□□ 1.39
NUP54-205ENST00000507257 RRP1P56182 461 aaKnown RBP23.74■■□□□ 1.39
NUP54-205ENST00000507257 RALBP1Q15311 655 aa23.74■■□□□ 1.39
NUP54-205ENST00000507257 RAPGEF6Q8TEU7 1601 aa23.74■■□□□ 1.39
NUP54-205ENST00000507257 NUP153P49790 1475 aaKnown RBP23.74■■□□□ 1.39
NUP54-205ENST00000507257 CAMSAP2Q08AD1 1489 aa23.74■■□□□ 1.39
NUP54-205ENST00000507257 MYBBP1AQ9BQG0 1328 aaKnown RBP23.73■■□□□ 1.39
NUP54-205ENST00000507257 ADCY10Q96PN6 1610 aa23.73■■□□□ 1.39
NUP54-205ENST00000507257 INSRP06213 1382 aa23.73■■□□□ 1.39
NUP54-205ENST00000507257 PDE3BQ13370 1112 aa23.72■■□□□ 1.39
NUP54-205ENST00000507257 ZMYM4Q5VZL5 1548 aa23.72■■□□□ 1.39
NUP54-205ENST00000507257 KDM5DQ9BY66 1539 aa23.69■■□□□ 1.38
NUP54-205ENST00000507257 TROQ12816 1431 aaPredicted RBP23.68■■□□□ 1.38
NUP54-205ENST00000507257 DISP1Q96F81 1524 aa23.68■■□□□ 1.38
NUP54-205ENST00000507257 ZNF644Q9H582 1327 aaPredicted RBP23.68■■□□□ 1.38
NUP54-205ENST00000507257 KIAA0586Q9BVV6 1533 aa23.66■■□□□ 1.38
NUP54-205ENST00000507257 BACH2Q9BYV9 841 aa23.66■■□□□ 1.38
NUP54-205ENST00000507257 RCAN3Q9UKA8 241 aa23.65■■□□□ 1.38
NUP54-205ENST00000507257 ANKRD30AQ9BXX3 1397 aa23.64■■□□□ 1.37
NUP54-205ENST00000507257 PDE4AP27815 886 aa23.64■■□□□ 1.37
NUP54-205ENST00000507257 GPATCH8Q9UKJ3 1502 aaKnown RBP23.63■■□□□ 1.37
NUP54-205ENST00000507257 PPM1GO15355 546 aaPredicted RBP23.63■■□□□ 1.37
NUP54-205ENST00000507257 SHANK2Q9UPX8 1470 aa23.63■■□□□ 1.37
NUP54-205ENST00000507257 CEP170Q5SW79 1584 aa23.62■■□□□ 1.37
NUP54-205ENST00000507257 PKD2Q13563 968 aa23.62■■□□□ 1.37
NUP54-205ENST00000507257 PARD3Q8TEW0 1356 aa23.61■■□□□ 1.37
NUP54-205ENST00000507257 EXOC6Q8TAG9 804 aa23.61■■□□□ 1.37
NUP54-205ENST00000507257 WASHC2CQ9Y4E1 1318 aa23.6■■□□□ 1.37
NUP54-205ENST00000507257 ANKRD50Q9ULJ7 1429 aa23.6■■□□□ 1.37
NUP54-205ENST00000507257 NLRP13Q86W25 1043 aa23.59■■□□□ 1.37
NUP54-205ENST00000507257 CARD11Q9BXL7 1154 aa23.59■■□□□ 1.37
NUP54-205ENST00000507257 POLR3GLQ9BT43 218 aa23.57■■□□□ 1.36
NUP54-205ENST00000507257 PLEKHH2Q8IVE3 1493 aa23.56■■□□□ 1.36
NUP54-205ENST00000507257 CFDP1Q9UEE9 299 aaPredicted RBP23.56■■□□□ 1.36
NUP54-205ENST00000507257 PTPRGP23470 1445 aa23.56■■□□□ 1.36
NUP54-205ENST00000507257 DDRGK1Q96HY6 314 aa23.55■■□□□ 1.36
NUP54-205ENST00000507257 ZNF326Q5BKZ1 582 aaKnown RBP23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms