RNA–Protein interactions for RNA: ENST00000506233.5

SCLT1-207, Transcript of sodium channel and clathrin linker 1, humanhuman

TSL 2

Gene SCLT1, Length 3,673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-207ENST00000506233 ZNF219Q9P2Y4 722 aaPredicted RBP9.32□□□□□ -0.92
SCLT1-207ENST00000506233 ADCY10Q96PN6 1610 aa9.31□□□□□ -0.92
SCLT1-207ENST00000506233 FHAD1B1AJZ9 1412 aa9.31□□□□□ -0.92
SCLT1-207ENST00000506233 GRIN2AQ12879 1464 aa9.31□□□□□ -0.92
SCLT1-207ENST00000506233 BRPF1P55201 1214 aaPredicted RBP9.3□□□□□ -0.92
SCLT1-207ENST00000506233 ERCC6L2Q5T890 1561 aa9.29□□□□□ -0.92
SCLT1-207ENST00000506233 NPM2Q86SE8 214 aaKnown RBP9.29□□□□□ -0.92
SCLT1-207ENST00000506233 U3KPZ7 1027 aaPredicted RBP9.27□□□□□ -0.93
SCLT1-207ENST00000506233 ABCA8O94911 1581 aa9.27□□□□□ -0.93
SCLT1-207ENST00000506233 CLASP1Q7Z460 1538 aa9.26□□□□□ -0.93
SCLT1-207ENST00000506233 NUP153P49790 1475 aaKnown RBP9.26□□□□□ -0.93
SCLT1-207ENST00000506233 SPOCK2Q92563 424 aa9.26□□□□□ -0.93
SCLT1-207ENST00000506233 CROCC2H7BZ55 1655 aa9.26□□□□□ -0.93
SCLT1-207ENST00000506233 MAGI1Q96QZ7 1491 aaPredicted RBP9.25□□□□□ -0.93
SCLT1-207ENST00000506233 KIF14Q15058 1648 aa9.24□□□□□ -0.93
SCLT1-207ENST00000506233 NKX1-1Q15270 411 aaPredicted RBP9.24□□□□□ -0.93
SCLT1-207ENST00000506233 RAPGEF6Q8TEU7 1601 aa9.24□□□□□ -0.93
SCLT1-207ENST00000506233 CDK13Q14004 1512 aaKnown RBP9.24□□□□□ -0.93
SCLT1-207ENST00000506233 GCC2Q8IWJ2 1684 aa9.24□□□□□ -0.93
SCLT1-207ENST00000506233 SYNJ2O15056 1496 aa9.23□□□□□ -0.93
SCLT1-207ENST00000506233 TCOF1Q13428 1488 aaKnown RBP9.23□□□□□ -0.93
SCLT1-207ENST00000506233 CDC42BPAQ5VT25 1732 aa9.23□□□□□ -0.93
SCLT1-207ENST00000506233 KIAA0586Q9BVV6 1533 aa9.23□□□□□ -0.93
SCLT1-207ENST00000506233 SUPT6HQ7KZ85 1726 aaKnown RBP9.23□□□□□ -0.93
SCLT1-207ENST00000506233 EPRSP07814 1512 aaKnown RBP9.21□□□□□ -0.94
SCLT1-207ENST00000506233 HECW1Q76N89 1606 aa9.2□□□□□ -0.94
SCLT1-207ENST00000506233 DHX57Q6P158 1386 aaKnown RBP9.19□□□□□ -0.94
SCLT1-207ENST00000506233 CDC42BPBQ9Y5S2 1711 aa9.19□□□□□ -0.94
SCLT1-207ENST00000506233 PTPN23Q9H3S7 1636 aa9.19□□□□□ -0.94
SCLT1-207ENST00000506233 SAMD1Q6SPF0 538 aaPredicted RBP9.19□□□□□ -0.94
SCLT1-207ENST00000506233 MSH5O43196 834 aa9.18□□□□□ -0.94
SCLT1-207ENST00000506233 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.17□□□□□ -0.94
SCLT1-207ENST00000506233 EHBP1L1Q8N3D4 1523 aa9.17□□□□□ -0.94
SCLT1-207ENST00000506233 RNF25Q96BH1 459 aaPredicted RBP9.16□□□□□ -0.94
SCLT1-207ENST00000506233 ABCC10Q5T3U5 1492 aa9.16□□□□□ -0.94
SCLT1-207ENST00000506233 NCOA2Q15596 1464 aa9.15□□□□□ -0.94
SCLT1-207ENST00000506233 PLB1Q6P1J6 1458 aa9.14□□□□□ -0.95
SCLT1-207ENST00000506233 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.14□□□□□ -0.95
SCLT1-207ENST00000506233 DNMT1P26358 1616 aaKnown RBP9.14□□□□□ -0.95
SCLT1-207ENST00000506233 CCNB3Q8WWL7 1395 aa9.12□□□□□ -0.95
SCLT1-207ENST00000506233 FGD6Q6ZV73 1430 aa9.12□□□□□ -0.95
SCLT1-207ENST00000506233 FMN1Q68DA7 1419 aa9.12□□□□□ -0.95
SCLT1-207ENST00000506233 GTPBP6O43824 516 aaPredicted RBP9.11□□□□□ -0.95
SCLT1-207ENST00000506233 HS6ST3Q8IZP7 471 aa9.11□□□□□ -0.95
SCLT1-207ENST00000506233 C1orf115Q9H7X2 142 aa9.1□□□□□ -0.95
SCLT1-207ENST00000506233 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.1□□□□□ -0.95
SCLT1-207ENST00000506233 LMOD2Q6P5Q4 547 aa9.1□□□□□ -0.95
SCLT1-207ENST00000506233 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.1□□□□□ -0.95
SCLT1-207ENST00000506233 TTC37Q6PGP7 1564 aa9.09□□□□□ -0.95
SCLT1-207ENST00000506233 CCDC18Q5T9S5 1454 aa9.09□□□□□ -0.95
SCLT1-207ENST00000506233 ERCC6Q03468 1493 aa9.09□□□□□ -0.95
SCLT1-207ENST00000506233 ADGBQ8N7X0 1667 aa9.09□□□□□ -0.95
SCLT1-207ENST00000506233 ABCC2Q92887 1545 aa9.08□□□□□ -0.96
SCLT1-207ENST00000506233 NAIPQ13075 1403 aa9.08□□□□□ -0.96
SCLT1-207ENST00000506233 PREX2Q70Z35 1606 aa9.08□□□□□ -0.96
SCLT1-207ENST00000506233 ATP10BO94823 1461 aa9.08□□□□□ -0.96
SCLT1-207ENST00000506233 SAMD9LQ8IVG5 1584 aa9.07□□□□□ -0.96
SCLT1-207ENST00000506233 ZCCHC11Q5TAX3 1644 aaKnown RBP9.07□□□□□ -0.96
SCLT1-207ENST00000506233 MYOM3Q5VTT5 1437 aa9.07□□□□□ -0.96
SCLT1-207ENST00000506233 TTBK1Q5TCY1 1321 aaPredicted RBP9.07□□□□□ -0.96
SCLT1-207ENST00000506233 HNRNPUL2Q1KMD3 747 aaKnown RBP9.07□□□□□ -0.96
SCLT1-207ENST00000506233 P3H3Q8IVL6 736 aa9.06□□□□□ -0.96
SCLT1-207ENST00000506233 ARID3AQ99856 593 aa9.06□□□□□ -0.96
SCLT1-207ENST00000506233 HFM1A2PYH4 1435 aa9.05□□□□□ -0.96
SCLT1-207ENST00000506233 NEUROD2Q15784 382 aa9.05□□□□□ -0.96
SCLT1-207ENST00000506233 RAB3GAP2Q9H2M9 1393 aa9.05□□□□□ -0.96
SCLT1-207ENST00000506233 GPATCH8Q9UKJ3 1502 aaKnown RBP9.05□□□□□ -0.96
SCLT1-207ENST00000506233 CIZ1Q9ULV3 898 aaPredicted RBP9.04□□□□□ -0.96
SCLT1-207ENST00000506233 PRG4Q92954 1404 aaPredicted RBP9.03□□□□□ -0.96
SCLT1-207ENST00000506233 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.03□□□□□ -0.96
SCLT1-207ENST00000506233 ITSN2Q9NZM3 1697 aa9.03□□□□□ -0.96
SCLT1-207ENST00000506233 MBD5Q9P267 1494 aa9.03□□□□□ -0.96
SCLT1-207ENST00000506233 KCNV2Q8TDN2 545 aa9.02□□□□□ -0.96
SCLT1-207ENST00000506233 ARHGEF12Q9NZN5 1544 aa9.02□□□□□ -0.96
SCLT1-207ENST00000506233 AKNAQ7Z591 1439 aa9.02□□□□□ -0.97
SCLT1-207ENST00000506233 ABCC5O15440 1437 aa9.01□□□□□ -0.97
SCLT1-207ENST00000506233 SLC24A3Q9HC58 644 aa9.01□□□□□ -0.97
SCLT1-207ENST00000506233 ADGRL2O95490 1459 aa9.01□□□□□ -0.97
SCLT1-207ENST00000506233 PZPP20742 1482 aa8.99□□□□□ -0.97
SCLT1-207ENST00000506233 MAST1Q9Y2H9 1570 aa8.99□□□□□ -0.97
SCLT1-207ENST00000506233 MIA2Q96PC5 1412 aa8.99□□□□□ -0.97
SCLT1-207ENST00000506233 DCAF8L1A6NGE4 600 aa8.99□□□□□ -0.97
SCLT1-207ENST00000506233 APLP2Q06481 763 aa8.99□□□□□ -0.97
SCLT1-207ENST00000506233 ARHGEF5Q12774 1597 aa8.98□□□□□ -0.97
SCLT1-207ENST00000506233 ABCA9Q8IUA7 1624 aa8.98□□□□□ -0.97
SCLT1-207ENST00000506233 KDM5DQ9BY66 1539 aa8.98□□□□□ -0.97
SCLT1-207ENST00000506233 CAMSAP2Q08AD1 1489 aa8.98□□□□□ -0.97
SCLT1-207ENST00000506233 UHRF1BP1LA0JNW5 1464 aa8.98□□□□□ -0.97
SCLT1-207ENST00000506233 NECTIN2Q92692 538 aa8.98□□□□□ -0.97
SCLT1-207ENST00000506233 DAPK1P53355 1430 aa8.97□□□□□ -0.97
SCLT1-207ENST00000506233 SETD5Q9C0A6 1442 aa8.97□□□□□ -0.97
SCLT1-207ENST00000506233 POLR1AO95602 1720 aaPredicted RBP8.97□□□□□ -0.97
SCLT1-207ENST00000506233 ZC3H15Q8WU90 426 aaKnown RBP8.96□□□□□ -0.97
SCLT1-207ENST00000506233 SIGLEC1Q9BZZ2 1709 aa8.96□□□□□ -0.97
SCLT1-207ENST00000506233 TROQ12816 1431 aaPredicted RBP8.96□□□□□ -0.98
SCLT1-207ENST00000506233 MROH1Q8NDA8 1641 aa8.96□□□□□ -0.98
SCLT1-207ENST00000506233 PLCD3Q8N3E9 789 aa8.95□□□□□ -0.98
SCLT1-207ENST00000506233 DEPDC5O75140 1603 aa8.95□□□□□ -0.98
SCLT1-207ENST00000506233 MYO5CQ9NQX4 1742 aa8.95□□□□□ -0.98
SCLT1-207ENST00000506233 UNC13BO14795 1591 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms