RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 KIF14Q15058 1648 aa34.52■■■■□ 3.12
SQSTM1-210ENST00000506042 PCF11O94913 1555 aaKnown RBP34.51■■■■□ 3.12
SQSTM1-210ENST00000506042 SCAPERQ9BY12 1400 aa34.51■■■■□ 3.12
SQSTM1-210ENST00000506042 ARHGAP35Q9NRY4 1499 aa34.48■■■■□ 3.11
SQSTM1-210ENST00000506042 CHIC1Q5VXU3 224 aa34.43■■■■□ 3.1
SQSTM1-210ENST00000506042 TROQ12816 1431 aaPredicted RBP34.42■■■■□ 3.1
SQSTM1-210ENST00000506042 YEATS2Q9ULM3 1422 aa34.4■■■■□ 3.1
SQSTM1-210ENST00000506042 ZNF518AQ6AHZ1 1483 aa34.39■■■■□ 3.1
SQSTM1-210ENST00000506042 ARHGAP5Q13017 1502 aa34.39■■■■□ 3.1
SQSTM1-210ENST00000506042 ATP10AO60312 1499 aa34.38■■■■□ 3.09
SQSTM1-210ENST00000506042 LMTK3Q96Q04 1460 aa34.38■■■■□ 3.09
SQSTM1-210ENST00000506042 FER1L4A9Z1Z3 1794 aa34.37■■■■□ 3.09
SQSTM1-210ENST00000506042 FBXO41Q8TF61 875 aa34.37■■■■□ 3.09
SQSTM1-210ENST00000506042 C9orf84Q5VXU9 1444 aa34.37■■■■□ 3.09
SQSTM1-210ENST00000506042 MYT1LQ9UL68 1186 aa34.36■■■■□ 3.09
SQSTM1-210ENST00000506042 CCDC18Q5T9S5 1454 aa34.35■■■■□ 3.09
SQSTM1-210ENST00000506042 MLECQ14165 292 aa34.34■■■■□ 3.09
SQSTM1-210ENST00000506042 PLPPR3Q6T4P5 718 aa34.33■■■■□ 3.09
SQSTM1-210ENST00000506042 CASKIN1Q8WXD9 1431 aa34.23■■■■□ 3.07
SQSTM1-210ENST00000506042 ARHGEF12Q9NZN5 1544 aa34.22■■■■□ 3.07
SQSTM1-210ENST00000506042 KDM5CP41229 1560 aa34.22■■■■□ 3.07
SQSTM1-210ENST00000506042 SIGLEC1Q9BZZ2 1709 aa34.19■■■■□ 3.06
SQSTM1-210ENST00000506042 ESF1Q9H501 851 aaKnown RBP34.19■■■■□ 3.06
SQSTM1-210ENST00000506042 PREX2Q70Z35 1606 aa34.18■■■■□ 3.06
SQSTM1-210ENST00000506042 LRRIQ1Q96JM4 1722 aa34.17■■■■□ 3.06
SQSTM1-210ENST00000506042 AFAP1Q8N556 730 aa34.15■■■■□ 3.06
SQSTM1-210ENST00000506042 PREX1Q8TCU6 1659 aa34.15■■■■□ 3.06
SQSTM1-210ENST00000506042 FYCO1Q9BQS8 1478 aa34.14■■■■□ 3.06
SQSTM1-210ENST00000506042 CDC42BPBQ9Y5S2 1711 aa34.14■■■■□ 3.06
SQSTM1-210ENST00000506042 HSPA2P54652 639 aa34.14■■■■□ 3.06
SQSTM1-210ENST00000506042 REREQ9P2R6 1566 aa34.14■■■■□ 3.06
SQSTM1-210ENST00000506042 MLH3Q9UHC1 1453 aa34.12■■■■□ 3.05
SQSTM1-210ENST00000506042 ABCC1P33527 1531 aa34.09■■■■□ 3.05
SQSTM1-210ENST00000506042 DIP2CQ9Y2E4 1556 aa34.08■■■■□ 3.05
SQSTM1-210ENST00000506042 DMRT2Q9Y5R5 561 aa34.07■■■■□ 3.04
SQSTM1-210ENST00000506042 ITSN2Q9NZM3 1697 aa34.06■■■■□ 3.04
SQSTM1-210ENST00000506042 UHRF1BP1Q6BDS2 1440 aa34.04■■■■□ 3.04
SQSTM1-210ENST00000506042 AGLP35573 1532 aa34.01■■■■□ 3.04
SQSTM1-210ENST00000506042 ABCA6Q8N139 1617 aa34.01■■■■□ 3.03
SQSTM1-210ENST00000506042 CDC42BPAQ5VT25 1732 aa34■■■■□ 3.03
SQSTM1-210ENST00000506042 SETD1BQ9UPS6 1966 aaKnown RBP34■■■■□ 3.03
SQSTM1-210ENST00000506042 CNTLNQ9NXG0 1405 aa33.97■■■■□ 3.03
SQSTM1-210ENST00000506042 TRAPPC8Q9Y2L5 1435 aa33.96■■■■□ 3.03
SQSTM1-210ENST00000506042 CEBPAP49715 358 aaPredicted RBP33.95■■■■□ 3.03
SQSTM1-210ENST00000506042 ZNF777Q9ULD5 760 aaPredicted RBP33.95■■■■□ 3.03
SQSTM1-210ENST00000506042 PLEKHH2Q8IVE3 1493 aa33.95■■■■□ 3.02
SQSTM1-210ENST00000506042 CERKQ8TCT0 537 aa33.92■■■■□ 3.02
SQSTM1-210ENST00000506042 KIDINS220Q9ULH0 1771 aa33.89■■■■□ 3.02
SQSTM1-210ENST00000506042 MTUS2Q5JR59 1369 aa33.88■■■■□ 3.01
SQSTM1-210ENST00000506042 SPAG9O60271 1321 aaKnown RBP33.88■■■■□ 3.01
SQSTM1-210ENST00000506042 CCNB3Q8WWL7 1395 aa33.87■■■■□ 3.01
SQSTM1-210ENST00000506042 C3P01024 1663 aa33.87■■■■□ 3.01
SQSTM1-210ENST00000506042 CFDP1Q9UEE9 299 aaPredicted RBP33.86■■■■□ 3.01
SQSTM1-210ENST00000506042 SAMD9LQ8IVG5 1584 aa33.85■■■■□ 3.01
SQSTM1-210ENST00000506042 SYCP2Q9BX26 1530 aa33.84■■■■□ 3.01
SQSTM1-210ENST00000506042 GPATCH8Q9UKJ3 1502 aaKnown RBP33.84■■■■□ 3.01
SQSTM1-210ENST00000506042 KIAA1107Q9UPP5 1409 aa33.83■■■■□ 3.01
SQSTM1-210ENST00000506042 MROH2AA6NES4 1674 aa33.79■■■■□ 3
SQSTM1-210ENST00000506042 ATP7AQ04656 1500 aa33.77■■■■□ 3
SQSTM1-210ENST00000506042 HNRNPMP52272 730 aaKnown RBP eCLIP33.75■■■□□ 2.99
SQSTM1-210ENST00000506042 NPATQ14207 1427 aa33.74■■■□□ 2.99
SQSTM1-210ENST00000506042 STRCQ7RTU9 1775 aa33.73■■■□□ 2.99
SQSTM1-210ENST00000506042 PTPRTO14522 1441 aa33.73■■■□□ 2.99
SQSTM1-210ENST00000506042 SUPT6HQ7KZ85 1726 aaKnown RBP33.72■■■□□ 2.99
SQSTM1-210ENST00000506042 EHBP1L1Q8N3D4 1523 aa33.72■■■□□ 2.99
SQSTM1-210ENST00000506042 INO80Q9ULG1 1556 aaPredicted RBP33.69■■■□□ 2.98
SQSTM1-210ENST00000506042 A2MP01023 1474 aa33.69■■■□□ 2.98
SQSTM1-210ENST00000506042 ADGBQ8N7X0 1667 aa33.66■■■□□ 2.98
SQSTM1-210ENST00000506042 PPP6R1Q9UPN7 881 aa33.66■■■□□ 2.98
SQSTM1-210ENST00000506042 ZMYM3Q14202 1370 aa33.64■■■□□ 2.98
SQSTM1-210ENST00000506042 PLXNC1O60486 1568 aa33.62■■■□□ 2.97
SQSTM1-210ENST00000506042 CLTCQ00610 1675 aaKnown RBP33.59■■■□□ 2.97
SQSTM1-210ENST00000506042 GGT6Q6P531 493 aa33.58■■■□□ 2.97
SQSTM1-210ENST00000506042 NCOA1Q15788 1441 aa33.58■■■□□ 2.97
SQSTM1-210ENST00000506042 CEP162Q5TB80 1403 aa33.58■■■□□ 2.97
SQSTM1-210ENST00000506042 TIAM1Q13009 1591 aa33.58■■■□□ 2.97
SQSTM1-210ENST00000506042 RTEL1-TNFRSF6BF6WH68 1400 aa33.56■■■□□ 2.96
SQSTM1-210ENST00000506042 RSPH4AQ5TD94 716 aa33.55■■■□□ 2.96
SQSTM1-210ENST00000506042 CAMSAP1Q5T5Y3 1602 aa33.53■■■□□ 2.96
SQSTM1-210ENST00000506042 IQSEC2Q5JU85 1478 aa33.53■■■□□ 2.96
SQSTM1-210ENST00000506042 ZNF142P52746 1687 aaPredicted RBP33.49■■■□□ 2.95
SQSTM1-210ENST00000506042 PKD2Q13563 968 aa33.49■■■□□ 2.95
SQSTM1-210ENST00000506042 MYO3AQ8NEV4 1616 aa33.49■■■□□ 2.95
SQSTM1-210ENST00000506042 PLA2R1Q13018 1463 aa33.46■■■□□ 2.95
SQSTM1-210ENST00000506042 CCDC141Q6ZP82 1450 aa33.45■■■□□ 2.95
SQSTM1-210ENST00000506042 FAM135AQ9P2D6 1515 aa33.45■■■□□ 2.95
SQSTM1-210ENST00000506042 CEP170BQ9Y4F5 1589 aaPredicted RBP33.45■■■□□ 2.95
SQSTM1-210ENST00000506042 MBD5Q9P267 1494 aa33.44■■■□□ 2.94
SQSTM1-210ENST00000506042 DHX29Q7Z478 1369 aaKnown RBP33.44■■■□□ 2.94
SQSTM1-210ENST00000506042 ZNF644Q9H582 1327 aaPredicted RBP33.43■■■□□ 2.94
SQSTM1-210ENST00000506042 PTPRKQ15262 1439 aa33.43■■■□□ 2.94
SQSTM1-210ENST00000506042 NCOA2Q15596 1464 aa33.4■■■□□ 2.94
SQSTM1-210ENST00000506042 TSPY4P0CV99 314 aa33.39■■■□□ 2.94
SQSTM1-210ENST00000506042 TSPY10P0CW01 314 aa33.39■■■□□ 2.94
SQSTM1-210ENST00000506042 CAMSAP2Q08AD1 1489 aa33.38■■■□□ 2.93
SQSTM1-210ENST00000506042 LTBP4Q8N2S1 1624 aa33.38■■■□□ 2.93
SQSTM1-210ENST00000506042 KIF3BO15066 747 aa33.36■■■□□ 2.93
SQSTM1-210ENST00000506042 NCKAP5LQ9HCH0 1330 aa33.34■■■□□ 2.93
SQSTM1-210ENST00000506042 KDM5DQ9BY66 1539 aa33.33■■■□□ 2.93
SQSTM1-210ENST00000506042 A2ML1A8K2U0 1454 aa33.33■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms