RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 EFCAB2Q5VUJ9 269 aa12.67□□□□□ -0.38
LIMCH1-206ENST00000505705 CFDP1Q9UEE9 299 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-206ENST00000505705 TTC37Q6PGP7 1564 aa12.67□□□□□ -0.38
LIMCH1-206ENST00000505705 NCOA2Q15596 1464 aa12.66□□□□□ -0.38
LIMCH1-206ENST00000505705 PLCH2O75038 1416 aa12.66□□□□□ -0.38
LIMCH1-206ENST00000505705 ARHGAP5Q13017 1502 aa12.65□□□□□ -0.38
LIMCH1-206ENST00000505705 MYO5CQ9NQX4 1742 aa12.63□□□□□ -0.39
LIMCH1-206ENST00000505705 FANCAO15360 1455 aa12.63□□□□□ -0.39
LIMCH1-206ENST00000505705 GPATCH8Q9UKJ3 1502 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-206ENST00000505705 AKNAQ7Z591 1439 aa12.61□□□□□ -0.39
LIMCH1-206ENST00000505705 PHLDB1Q86UU1 1377 aa12.6□□□□□ -0.39
LIMCH1-206ENST00000505705 MYT1LQ9UL68 1186 aa12.6□□□□□ -0.39
LIMCH1-206ENST00000505705 NEO1Q92859 1461 aa12.59□□□□□ -0.39
LIMCH1-206ENST00000505705 PPRC1Q5VV67 1664 aaKnown RBP12.59□□□□□ -0.39
LIMCH1-206ENST00000505705 ITSN2Q9NZM3 1697 aa12.59□□□□□ -0.39
LIMCH1-206ENST00000505705 MYOM3Q5VTT5 1437 aa12.59□□□□□ -0.39
LIMCH1-206ENST00000505705 CFAP74Q9C0B2 1584 aa12.59□□□□□ -0.39
LIMCH1-206ENST00000505705 CDC42BPAQ5VT25 1732 aa12.59□□□□□ -0.39
LIMCH1-206ENST00000505705 PREX2Q70Z35 1606 aa12.59□□□□□ -0.39
LIMCH1-206ENST00000505705 ARAP3Q8WWN8 1544 aa12.58□□□□□ -0.4
LIMCH1-206ENST00000505705 CDC42BPBQ9Y5S2 1711 aa12.58□□□□□ -0.4
LIMCH1-206ENST00000505705 SCAPERQ9BY12 1400 aa12.57□□□□□ -0.4
LIMCH1-206ENST00000505705 HNRNPMP52272 730 aaKnown RBP eCLIP12.57□□□□□ -0.4
LIMCH1-206ENST00000505705 FAM50AQ14320 339 aaKnown RBP12.57□□□□□ -0.4
LIMCH1-206ENST00000505705 ADGRL1O94910 1474 aa12.57□□□□□ -0.4
LIMCH1-206ENST00000505705 ZNF644Q9H582 1327 aaPredicted RBP12.57□□□□□ -0.4
LIMCH1-206ENST00000505705 RAPGEF3O95398 923 aa12.56□□□□□ -0.4
LIMCH1-206ENST00000505705 MIA2Q96PC5 1412 aa12.55□□□□□ -0.4
LIMCH1-206ENST00000505705 KDM6BO15054 1643 aa12.55□□□□□ -0.4
LIMCH1-206ENST00000505705 DENND4BO75064 1496 aaPredicted RBP12.54□□□□□ -0.4
LIMCH1-206ENST00000505705 PLEKHH2Q8IVE3 1493 aa12.54□□□□□ -0.4
LIMCH1-206ENST00000505705 FGD6Q6ZV73 1430 aa12.54□□□□□ -0.4
LIMCH1-206ENST00000505705 AFAP1Q8N556 730 aa12.53□□□□□ -0.4
LIMCH1-206ENST00000505705 CAMSAP2Q08AD1 1489 aa12.53□□□□□ -0.4
LIMCH1-206ENST00000505705 SAMD9LQ8IVG5 1584 aa12.52□□□□□ -0.4
LIMCH1-206ENST00000505705 TSPY4P0CV99 314 aa12.52□□□□□ -0.41
LIMCH1-206ENST00000505705 TSPY10P0CW01 314 aa12.52□□□□□ -0.41
LIMCH1-206ENST00000505705 RSPH4AQ5TD94 716 aa12.52□□□□□ -0.41
LIMCH1-206ENST00000505705 KIAA1107Q9UPP5 1409 aa12.51□□□□□ -0.41
LIMCH1-206ENST00000505705 SYCP2Q9BX26 1530 aa12.51□□□□□ -0.41
LIMCH1-206ENST00000505705 PTPN23Q9H3S7 1636 aa12.51□□□□□ -0.41
LIMCH1-206ENST00000505705 ITGAEP38570 1179 aa12.5□□□□□ -0.41
LIMCH1-206ENST00000505705 COL17A1Q9UMD9 1497 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-206ENST00000505705 ABCC1P33527 1531 aa12.5□□□□□ -0.41
LIMCH1-206ENST00000505705 ZNF518AQ6AHZ1 1483 aa12.49□□□□□ -0.41
LIMCH1-206ENST00000505705 ARHGEF12Q9NZN5 1544 aa12.48□□□□□ -0.41
LIMCH1-206ENST00000505705 POGZQ7Z3K3 1410 aa12.48□□□□□ -0.41
LIMCH1-206ENST00000505705 TRAPPC8Q9Y2L5 1435 aa12.48□□□□□ -0.41
LIMCH1-206ENST00000505705 SPAG9O60271 1321 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-206ENST00000505705 TCOF1Q13428 1488 aaKnown RBP12.46□□□□□ -0.41
LIMCH1-206ENST00000505705 CHIC2Q9UKJ5 165 aa12.46□□□□□ -0.41
LIMCH1-206ENST00000505705 CCDC141Q6ZP82 1450 aa12.46□□□□□ -0.42
LIMCH1-206ENST00000505705 MBD5Q9P267 1494 aa12.46□□□□□ -0.42
LIMCH1-206ENST00000505705 RRBP1Q9P2E9 1410 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-206ENST00000505705 RICTORQ6R327 1708 aa12.43□□□□□ -0.42
LIMCH1-206ENST00000505705 DAPK1P53355 1430 aa12.43□□□□□ -0.42
LIMCH1-206ENST00000505705 ABCC5O15440 1437 aa12.42□□□□□ -0.42
LIMCH1-206ENST00000505705 ARHGEF5Q12774 1597 aa12.42□□□□□ -0.42
LIMCH1-206ENST00000505705 FRMPD1Q5SYB0 1578 aa12.42□□□□□ -0.42
LIMCH1-206ENST00000505705 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIMCH1-206ENST00000505705 ARID4BQ4LE39 1312 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-206ENST00000505705 MAGI2Q86UL8 1455 aa12.41□□□□□ -0.42
LIMCH1-206ENST00000505705 ZFYVE16Q7Z3T8 1539 aa12.41□□□□□ -0.42
LIMCH1-206ENST00000505705 MLH3Q9UHC1 1453 aa12.4□□□□□ -0.42
LIMCH1-206ENST00000505705 KDM5CP41229 1560 aa12.4□□□□□ -0.42
LIMCH1-206ENST00000505705 C9orf84Q5VXU9 1444 aa12.4□□□□□ -0.42
LIMCH1-206ENST00000505705 RRP7BPQ9NSQ0 103 aa12.4□□□□□ -0.42
LIMCH1-206ENST00000505705 DNMT1P26358 1616 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-206ENST00000505705 HECW2Q9P2P5 1572 aa12.39□□□□□ -0.43
LIMCH1-206ENST00000505705 RTEL1-TNFRSF6BF6WH68 1400 aa12.39□□□□□ -0.43
LIMCH1-206ENST00000505705 YEATS2Q9ULM3 1422 aa12.39□□□□□ -0.43
LIMCH1-206ENST00000505705 ZMYM4Q5VZL5 1548 aa12.39□□□□□ -0.43
LIMCH1-206ENST00000505705 ATP7AQ04656 1500 aa12.38□□□□□ -0.43
LIMCH1-206ENST00000505705 ANKRD30AQ9BXX3 1397 aa12.38□□□□□ -0.43
LIMCH1-206ENST00000505705 ATP10AO60312 1499 aa12.37□□□□□ -0.43
LIMCH1-206ENST00000505705 SHANK2Q9UPX8 1470 aa12.36□□□□□ -0.43
LIMCH1-206ENST00000505705 KIDINS220Q9ULH0 1771 aa12.35□□□□□ -0.43
LIMCH1-206ENST00000505705 MLECQ14165 292 aa12.35□□□□□ -0.43
LIMCH1-206ENST00000505705 INO80Q9ULG1 1556 aaPredicted RBP12.35□□□□□ -0.43
LIMCH1-206ENST00000505705 MAST1Q9Y2H9 1570 aa12.35□□□□□ -0.43
LIMCH1-206ENST00000505705 KIF15Q9NS87 1388 aa12.34□□□□□ -0.43
LIMCH1-206ENST00000505705 ARHGEF40Q8TER5 1519 aa12.34□□□□□ -0.43
LIMCH1-206ENST00000505705 TRIM26Q12899 539 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-206ENST00000505705 CROCC2H7BZ55 1655 aa12.34□□□□□ -0.43
LIMCH1-206ENST00000505705 PTPRKQ15262 1439 aa12.34□□□□□ -0.43
LIMCH1-206ENST00000505705 SCAF1Q9H7N4 1312 aaKnown RBP12.34□□□□□ -0.43
LIMCH1-206ENST00000505705 A2MP01023 1474 aa12.34□□□□□ -0.43
LIMCH1-206ENST00000505705 DHX29Q7Z478 1369 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-206ENST00000505705 DIP2CQ9Y2E4 1556 aa12.33□□□□□ -0.44
LIMCH1-206ENST00000505705 ABCA6Q8N139 1617 aa12.33□□□□□ -0.44
LIMCH1-206ENST00000505705 NCOA1Q15788 1441 aa12.32□□□□□ -0.44
LIMCH1-206ENST00000505705 KIF3BO15066 747 aa12.32□□□□□ -0.44
LIMCH1-206ENST00000505705 GGT6Q6P531 493 aa12.32□□□□□ -0.44
LIMCH1-206ENST00000505705 ROCK1Q13464 1354 aa12.31□□□□□ -0.44
LIMCH1-206ENST00000505705 ESF1Q9H501 851 aaKnown RBP12.31□□□□□ -0.44
LIMCH1-206ENST00000505705 ADGBQ8N7X0 1667 aa12.31□□□□□ -0.44
LIMCH1-206ENST00000505705 ADGRL2O95490 1459 aa12.3□□□□□ -0.44
LIMCH1-206ENST00000505705 DUOX2Q9NRD8 1548 aa12.3□□□□□ -0.44
LIMCH1-206ENST00000505705 PLXNC1O60486 1568 aa12.3□□□□□ -0.44
LIMCH1-206ENST00000505705 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms