RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 TTC37Q6PGP7 1564 aa18.78■□□□□ 0.6
PDLIM5-208ENST00000504489 CD109Q6YHK3 1445 aa18.77■□□□□ 0.6
PDLIM5-208ENST00000504489 EHBP1L1Q8N3D4 1523 aa18.76■□□□□ 0.59
PDLIM5-208ENST00000504489 CDC42BPAQ5VT25 1732 aa18.74■□□□□ 0.59
PDLIM5-208ENST00000504489 MTUS2Q5JR59 1369 aa18.74■□□□□ 0.59
PDLIM5-208ENST00000504489 TEX14Q8IWB6 1497 aa18.73■□□□□ 0.59
PDLIM5-208ENST00000504489 SUPT6HQ7KZ85 1726 aaKnown RBP18.73■□□□□ 0.59
PDLIM5-208ENST00000504489 CDC42BPBQ9Y5S2 1711 aa18.72■□□□□ 0.59
PDLIM5-208ENST00000504489 LRRC9Q6ZRR7 1453 aa18.71■□□□□ 0.59
PDLIM5-208ENST00000504489 APLP2Q06481 763 aa18.71■□□□□ 0.59
PDLIM5-208ENST00000504489 CFAP74Q9C0B2 1584 aa18.69■□□□□ 0.58
PDLIM5-208ENST00000504489 PREX2Q70Z35 1606 aa18.69■□□□□ 0.58
PDLIM5-208ENST00000504489 ARAP3Q8WWN8 1544 aa18.69■□□□□ 0.58
PDLIM5-208ENST00000504489 PLCH2O75038 1416 aa18.66■□□□□ 0.58
PDLIM5-208ENST00000504489 ITSN2Q9NZM3 1697 aa18.66■□□□□ 0.58
PDLIM5-208ENST00000504489 KANK4Q5T7N3 995 aaPredicted RBP18.65■□□□□ 0.58
PDLIM5-208ENST00000504489 NEO1Q92859 1461 aa18.65■□□□□ 0.58
PDLIM5-208ENST00000504489 KDM6BO15054 1643 aa18.64■□□□□ 0.57
PDLIM5-208ENST00000504489 PHLDB1Q86UU1 1377 aa18.63■□□□□ 0.57
PDLIM5-208ENST00000504489 FANCAO15360 1455 aa18.62■□□□□ 0.57
PDLIM5-208ENST00000504489 NCOA2Q15596 1464 aa18.62■□□□□ 0.57
PDLIM5-208ENST00000504489 GPATCH8Q9UKJ3 1502 aaKnown RBP18.61■□□□□ 0.57
PDLIM5-208ENST00000504489 ARHGAP5Q13017 1502 aa18.6■□□□□ 0.57
PDLIM5-208ENST00000504489 NPM3O75607 178 aaKnown RBP18.6■□□□□ 0.57
PDLIM5-208ENST00000504489 CCNB3Q8WWL7 1395 aa18.59■□□□□ 0.57
PDLIM5-208ENST00000504489 EFCAB2Q5VUJ9 269 aa18.58■□□□□ 0.56
PDLIM5-208ENST00000504489 AKNAQ7Z591 1439 aa18.57■□□□□ 0.56
PDLIM5-208ENST00000504489 RICTORQ6R327 1708 aa18.57■□□□□ 0.56
PDLIM5-208ENST00000504489 COL17A1Q9UMD9 1497 aaPredicted RBP18.56■□□□□ 0.56
PDLIM5-208ENST00000504489 SAMD9LQ8IVG5 1584 aa18.54■□□□□ 0.56
PDLIM5-208ENST00000504489 CFDP1Q9UEE9 299 aaPredicted RBP18.52■□□□□ 0.56
PDLIM5-208ENST00000504489 ADGRL1O94910 1474 aa18.52■□□□□ 0.55
PDLIM5-208ENST00000504489 ABCC1P33527 1531 aa18.51■□□□□ 0.55
PDLIM5-208ENST00000504489 DENND4BO75064 1496 aaPredicted RBP18.5■□□□□ 0.55
PDLIM5-208ENST00000504489 FRMPD1Q5SYB0 1578 aa18.5■□□□□ 0.55
PDLIM5-208ENST00000504489 MYOM3Q5VTT5 1437 aa18.49■□□□□ 0.55
PDLIM5-208ENST00000504489 SCAPERQ9BY12 1400 aa18.49■□□□□ 0.55
PDLIM5-208ENST00000504489 PLEKHH2Q8IVE3 1493 aa18.48■□□□□ 0.55
PDLIM5-208ENST00000504489 KCNA4P22459 653 aa18.48■□□□□ 0.55
PDLIM5-208ENST00000504489 MIA2Q96PC5 1412 aa18.47■□□□□ 0.55
PDLIM5-208ENST00000504489 ZNF777Q9ULD5 760 aaPredicted RBP18.46■□□□□ 0.55
PDLIM5-208ENST00000504489 KIAA1107Q9UPP5 1409 aa18.46■□□□□ 0.55
PDLIM5-208ENST00000504489 ARHGEF12Q9NZN5 1544 aa18.45■□□□□ 0.54
PDLIM5-208ENST00000504489 ZMYM4Q5VZL5 1548 aa18.44■□□□□ 0.54
PDLIM5-208ENST00000504489 SYCP2Q9BX26 1530 aa18.44■□□□□ 0.54
PDLIM5-208ENST00000504489 POGZQ7Z3K3 1410 aa18.44■□□□□ 0.54
PDLIM5-208ENST00000504489 RAPGEF3O95398 923 aa18.44■□□□□ 0.54
PDLIM5-208ENST00000504489 PTPN23Q9H3S7 1636 aa18.44■□□□□ 0.54
PDLIM5-208ENST00000504489 CAMSAP2Q08AD1 1489 aa18.43■□□□□ 0.54
PDLIM5-208ENST00000504489 ZNF518AQ6AHZ1 1483 aa18.43■□□□□ 0.54
PDLIM5-208ENST00000504489 KDM5CP41229 1560 aa18.42■□□□□ 0.54
PDLIM5-208ENST00000504489 ZNF644Q9H582 1327 aaPredicted RBP18.42■□□□□ 0.54
PDLIM5-208ENST00000504489 FGD6Q6ZV73 1430 aa18.41■□□□□ 0.54
PDLIM5-208ENST00000504489 PPARGC1BQ86YN6 1023 aaKnown RBP18.41■□□□□ 0.54
PDLIM5-208ENST00000504489 TRAPPC8Q9Y2L5 1435 aa18.4■□□□□ 0.54
PDLIM5-208ENST00000504489 ARHGEF5Q12774 1597 aa18.39■□□□□ 0.53
PDLIM5-208ENST00000504489 HNRNPMP52272 730 aaKnown RBP eCLIP18.39■□□□□ 0.53
PDLIM5-208ENST00000504489 MAGI2Q86UL8 1455 aa18.39■□□□□ 0.53
PDLIM5-208ENST00000504489 MBD5Q9P267 1494 aa18.39■□□□□ 0.53
PDLIM5-208ENST00000504489 KIDINS220Q9ULH0 1771 aa18.38■□□□□ 0.53
PDLIM5-208ENST00000504489 TCOF1Q13428 1488 aaKnown RBP18.38■□□□□ 0.53
PDLIM5-208ENST00000504489 HECW2Q9P2P5 1572 aa18.38■□□□□ 0.53
PDLIM5-208ENST00000504489 AFAP1Q8N556 730 aa18.37■□□□□ 0.53
PDLIM5-208ENST00000504489 ARHGEF40Q8TER5 1519 aa18.35■□□□□ 0.53
PDLIM5-208ENST00000504489 MLH3Q9UHC1 1453 aa18.35■□□□□ 0.53
PDLIM5-208ENST00000504489 RSPH4AQ5TD94 716 aa18.35■□□□□ 0.53
PDLIM5-208ENST00000504489 CROCC2H7BZ55 1655 aa18.34■□□□□ 0.53
PDLIM5-208ENST00000504489 ZFYVE16Q7Z3T8 1539 aa18.34■□□□□ 0.53
PDLIM5-208ENST00000504489 CCDC141Q6ZP82 1450 aa18.34■□□□□ 0.53
PDLIM5-208ENST00000504489 INO80Q9ULG1 1556 aaPredicted RBP18.34■□□□□ 0.53
PDLIM5-208ENST00000504489 DNMT1P26358 1616 aaKnown RBP18.33■□□□□ 0.52
PDLIM5-208ENST00000504489 ABCA6Q8N139 1617 aa18.31■□□□□ 0.52
PDLIM5-208ENST00000504489 MAST1Q9Y2H9 1570 aa18.3■□□□□ 0.52
PDLIM5-208ENST00000504489 ATP7AQ04656 1500 aa18.3■□□□□ 0.52
PDLIM5-208ENST00000504489 DIP2CQ9Y2E4 1556 aa18.3■□□□□ 0.52
PDLIM5-208ENST00000504489 SPAG9O60271 1321 aaKnown RBP18.29■□□□□ 0.52
PDLIM5-208ENST00000504489 ADGBQ8N7X0 1667 aa18.29■□□□□ 0.52
PDLIM5-208ENST00000504489 YEATS2Q9ULM3 1422 aa18.29■□□□□ 0.52
PDLIM5-208ENST00000504489 RTEL1-TNFRSF6BF6WH68 1400 aa18.28■□□□□ 0.52
PDLIM5-208ENST00000504489 ATP10AO60312 1499 aa18.27■□□□□ 0.52
PDLIM5-208ENST00000504489 RRBP1Q9P2E9 1410 aaKnown RBP18.27■□□□□ 0.52
PDLIM5-208ENST00000504489 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.27■□□□□ 0.51
PDLIM5-208ENST00000504489 REREQ9P2R6 1566 aa18.26■□□□□ 0.51
PDLIM5-208ENST00000504489 SIGLEC1Q9BZZ2 1709 aa18.26■□□□□ 0.51
PDLIM5-208ENST00000504489 ABCC5O15440 1437 aa18.25■□□□□ 0.51
PDLIM5-208ENST00000504489 DAPK1P53355 1430 aa18.25■□□□□ 0.51
PDLIM5-208ENST00000504489 TSPY4P0CV99 314 aa18.25■□□□□ 0.51
PDLIM5-208ENST00000504489 TSPY10P0CW01 314 aa18.25■□□□□ 0.51
PDLIM5-208ENST00000504489 FAM50AQ14320 339 aaKnown RBP18.25■□□□□ 0.51
PDLIM5-208ENST00000504489 MYT1LQ9UL68 1186 aa18.25■□□□□ 0.51
PDLIM5-208ENST00000504489 SHANK2Q9UPX8 1470 aa18.25■□□□□ 0.51
PDLIM5-208ENST00000504489 PLXNC1O60486 1568 aa18.23■□□□□ 0.51
PDLIM5-208ENST00000504489 C9orf84Q5VXU9 1444 aa18.23■□□□□ 0.51
PDLIM5-208ENST00000504489 BCORL1Q5H9F3 1711 aa18.2■□□□□ 0.5
PDLIM5-208ENST00000504489 RNF39Q9H2S5 420 aa18.19■□□□□ 0.5
PDLIM5-208ENST00000504489 A2MP01023 1474 aa18.18■□□□□ 0.5
PDLIM5-208ENST00000504489 AGLP35573 1532 aa18.18■□□□□ 0.5
PDLIM5-208ENST00000504489 ADGRL2O95490 1459 aa18.16■□□□□ 0.5
PDLIM5-208ENST00000504489 CACNB1Q02641 598 aaPredicted RBP18.16■□□□□ 0.5
PDLIM5-208ENST00000504489 ADAMTSL3P82987 1691 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms