RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 EFCAB2Q5VUJ9 269 aa12.47□□□□□ -0.41
SF3A1-210ENST00000498259 AKNAQ7Z591 1439 aa12.46□□□□□ -0.41
SF3A1-210ENST00000498259 ROCK1Q13464 1354 aa12.46□□□□□ -0.41
SF3A1-210ENST00000498259 SENP3Q9H4L4 574 aaPredicted RBP12.46□□□□□ -0.41
SF3A1-210ENST00000498259 HFM1A2PYH4 1435 aa12.45□□□□□ -0.42
SF3A1-210ENST00000498259 CAMSAP2Q08AD1 1489 aa12.45□□□□□ -0.42
SF3A1-210ENST00000498259 CYB5RLQ6IPT4 315 aa12.44□□□□□ -0.42
SF3A1-210ENST00000498259 PLCH2O75038 1416 aa12.44□□□□□ -0.42
SF3A1-210ENST00000498259 DAPK1P53355 1430 aa12.44□□□□□ -0.42
SF3A1-210ENST00000498259 ASXL2Q76L83 1435 aa12.44□□□□□ -0.42
SF3A1-210ENST00000498259 RAB3GAP2Q9H2M9 1393 aa12.43□□□□□ -0.42
SF3A1-210ENST00000498259 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.43□□□□□ -0.42
SF3A1-210ENST00000498259 ARAP3Q8WWN8 1544 aa12.43□□□□□ -0.42
SF3A1-210ENST00000498259 KIAA1107Q9UPP5 1409 aa12.43□□□□□ -0.42
SF3A1-210ENST00000498259 ARHGAP5Q13017 1502 aa12.42□□□□□ -0.42
SF3A1-210ENST00000498259 ANKRD30AQ9BXX3 1397 aa12.42□□□□□ -0.42
SF3A1-210ENST00000498259 DNMT1P26358 1616 aaKnown RBP12.41□□□□□ -0.42
SF3A1-210ENST00000498259 CDC42BPAQ5VT25 1732 aa12.41□□□□□ -0.42
SF3A1-210ENST00000498259 PREX2Q70Z35 1606 aa12.4□□□□□ -0.42
SF3A1-210ENST00000498259 ZNF644Q9H582 1327 aaPredicted RBP12.4□□□□□ -0.42
SF3A1-210ENST00000498259 MYO5CQ9NQX4 1742 aa12.4□□□□□ -0.42
SF3A1-210ENST00000498259 ABCC5O15440 1437 aa12.4□□□□□ -0.42
SF3A1-210ENST00000498259 RIMBP3CA6NJZ7 1639 aa12.4□□□□□ -0.42
SF3A1-210ENST00000498259 RIMBP3BA6NNM3 1639 aa12.4□□□□□ -0.42
SF3A1-210ENST00000498259 RIMBP3Q9UFD9 1639 aa12.4□□□□□ -0.42
SF3A1-210ENST00000498259 SHANK2Q9UPX8 1470 aa12.4□□□□□ -0.43
SF3A1-210ENST00000498259 CHIC2Q9UKJ5 165 aa12.39□□□□□ -0.43
SF3A1-210ENST00000498259 ARHGEF5Q12774 1597 aa12.38□□□□□ -0.43
SF3A1-210ENST00000498259 NAIPQ13075 1403 aa12.37□□□□□ -0.43
SF3A1-210ENST00000498259 MAPKBP1O60336 1514 aa12.37□□□□□ -0.43
SF3A1-210ENST00000498259 RRP7BPQ9NSQ0 103 aa12.37□□□□□ -0.43
SF3A1-210ENST00000498259 CCDC141Q6ZP82 1450 aa12.37□□□□□ -0.43
SF3A1-210ENST00000498259 TTC37Q6PGP7 1564 aa12.37□□□□□ -0.43
SF3A1-210ENST00000498259 PTPRKQ15262 1439 aa12.37□□□□□ -0.43
SF3A1-210ENST00000498259 HNRNPMP52272 730 aaKnown RBP eCLIP12.36□□□□□ -0.43
SF3A1-210ENST00000498259 ABCA9Q8IUA7 1624 aa12.36□□□□□ -0.43
SF3A1-210ENST00000498259 ADGRL2O95490 1459 aa12.35□□□□□ -0.43
SF3A1-210ENST00000498259 DHX57Q6P158 1386 aaKnown RBP12.35□□□□□ -0.43
SF3A1-210ENST00000498259 NCOA1Q15788 1441 aa12.35□□□□□ -0.43
SF3A1-210ENST00000498259 C9orf84Q5VXU9 1444 aa12.35□□□□□ -0.43
SF3A1-210ENST00000498259 CDC42BPBQ9Y5S2 1711 aa12.34□□□□□ -0.43
SF3A1-210ENST00000498259 CD109Q6YHK3 1445 aa12.34□□□□□ -0.43
SF3A1-210ENST00000498259 FANCAO15360 1455 aa12.34□□□□□ -0.43
SF3A1-210ENST00000498259 MBD5Q9P267 1494 aa12.34□□□□□ -0.43
SF3A1-210ENST00000498259 TRIM52Q96A61 297 aa12.33□□□□□ -0.44
SF3A1-210ENST00000498259 SAMD9LQ8IVG5 1584 aa12.32□□□□□ -0.44
SF3A1-210ENST00000498259 CFAP74Q9C0B2 1584 aa12.32□□□□□ -0.44
SF3A1-210ENST00000498259 TIMELESSQ9UNS1 1208 aa12.32□□□□□ -0.44
SF3A1-210ENST00000498259 GCC2Q8IWJ2 1684 aa12.32□□□□□ -0.44
SF3A1-210ENST00000498259 ADGBQ8N7X0 1667 aa12.32□□□□□ -0.44
SF3A1-210ENST00000498259 CROCC2H7BZ55 1655 aa12.3□□□□□ -0.44
SF3A1-210ENST00000498259 SYCP2Q9BX26 1530 aa12.3□□□□□ -0.44
SF3A1-210ENST00000498259 SPAG9O60271 1321 aaKnown RBP12.3□□□□□ -0.44
SF3A1-210ENST00000498259 RTEL1-TNFRSF6BF6WH68 1400 aa12.29□□□□□ -0.44
SF3A1-210ENST00000498259 ANKRD50Q9ULJ7 1429 aa12.29□□□□□ -0.44
SF3A1-210ENST00000498259 MAST1Q9Y2H9 1570 aa12.29□□□□□ -0.44
SF3A1-210ENST00000498259 KIF15Q9NS87 1388 aa12.29□□□□□ -0.44
SF3A1-210ENST00000498259 NEO1Q92859 1461 aa12.28□□□□□ -0.44
SF3A1-210ENST00000498259 ABCC1P33527 1531 aa12.28□□□□□ -0.44
SF3A1-210ENST00000498259 GLI2P10070 1586 aa12.28□□□□□ -0.44
SF3A1-210ENST00000498259 ADGRL1O94910 1474 aa12.27□□□□□ -0.44
SF3A1-210ENST00000498259 MYT1LQ9UL68 1186 aa12.27□□□□□ -0.45
SF3A1-210ENST00000498259 FAM69CQ0P6D2 419 aa12.26□□□□□ -0.45
SF3A1-210ENST00000498259 SCAPERQ9BY12 1400 aa12.26□□□□□ -0.45
SF3A1-210ENST00000498259 MPHOSPH9Q99550 1183 aa12.25□□□□□ -0.45
SF3A1-210ENST00000498259 ZNF518AQ6AHZ1 1483 aa12.25□□□□□ -0.45
SF3A1-210ENST00000498259 TEX14Q8IWB6 1497 aa12.24□□□□□ -0.45
SF3A1-210ENST00000498259 SLC4A1APQ9BWU0 796 aaKnown RBP12.24□□□□□ -0.45
SF3A1-210ENST00000498259 PLXNC1O60486 1568 aa12.23□□□□□ -0.45
SF3A1-210ENST00000498259 DUOX2Q9NRD8 1548 aa12.23□□□□□ -0.45
SF3A1-210ENST00000498259 ERBINQ96RT1 1412 aa12.22□□□□□ -0.45
SF3A1-210ENST00000498259 AFAP1Q8N556 730 aa12.22□□□□□ -0.45
SF3A1-210ENST00000498259 TRAPPC8Q9Y2L5 1435 aa12.21□□□□□ -0.45
SF3A1-210ENST00000498259 ARHGEF12Q9NZN5 1544 aa12.21□□□□□ -0.46
SF3A1-210ENST00000498259 NUP155O75694 1391 aa12.2□□□□□ -0.46
SF3A1-210ENST00000498259 DENND4BO75064 1496 aaPredicted RBP12.2□□□□□ -0.46
SF3A1-210ENST00000498259 MAP3K4Q9Y6R4 1608 aa12.19□□□□□ -0.46
SF3A1-210ENST00000498259 POGZQ7Z3K3 1410 aa12.18□□□□□ -0.46
SF3A1-210ENST00000498259 DIP2BQ9P265 1576 aa12.18□□□□□ -0.46
SF3A1-210ENST00000498259 KANK1Q14678 1352 aa12.18□□□□□ -0.46
SF3A1-210ENST00000498259 TONSLQ96HA7 1378 aa12.18□□□□□ -0.46
SF3A1-210ENST00000498259 ATP7AQ04656 1500 aa12.17□□□□□ -0.46
SF3A1-210ENST00000498259 MLH3Q9UHC1 1453 aa12.17□□□□□ -0.46
SF3A1-210ENST00000498259 NEUROD1Q13562 356 aa12.17□□□□□ -0.46
SF3A1-210ENST00000498259 DHX29Q7Z478 1369 aaKnown RBP12.16□□□□□ -0.46
SF3A1-210ENST00000498259 ZFYVE16Q7Z3T8 1539 aa12.16□□□□□ -0.46
SF3A1-210ENST00000498259 KDM5DQ9BY66 1539 aa12.15□□□□□ -0.46
SF3A1-210ENST00000498259 PKD2Q13563 968 aa12.14□□□□□ -0.47
SF3A1-210ENST00000498259 KDM6BO15054 1643 aa12.14□□□□□ -0.47
SF3A1-210ENST00000498259 KDM5CP41229 1560 aa12.13□□□□□ -0.47
SF3A1-210ENST00000498259 INO80Q9ULG1 1556 aaPredicted RBP12.13□□□□□ -0.47
SF3A1-210ENST00000498259 MAGI2Q86UL8 1455 aa12.13□□□□□ -0.47
SF3A1-210ENST00000498259 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.12□□□□□ -0.475e-10■■□□□ 11.6
SF3A1-210ENST00000498259 DNAJC5Q9H3Z4 198 aa12.12□□□□□ -0.47
SF3A1-210ENST00000498259 HECW2Q9P2P5 1572 aa12.11□□□□□ -0.47
SF3A1-210ENST00000498259 PZPP20742 1482 aa12.11□□□□□ -0.47
SF3A1-210ENST00000498259 ANKRD30BQ9BXX2 1392 aa12.11□□□□□ -0.47
SF3A1-210ENST00000498259 SIN3AQ96ST3 1273 aa12.11□□□□□ -0.47
SF3A1-210ENST00000498259 EIF2AK4Q9P2K8 1649 aaKnown RBP12.11□□□□□ -0.47
SF3A1-210ENST00000498259 UNC13BO14795 1591 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms