RNA–Protein interactions for RNA: ENST00000497544.2

CTSD-206, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 783 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-206ENST00000497544 RAPGEF3O95398 923 aa31.4■■■□□ 2.62
CTSD-206ENST00000497544 PHLDB1Q86UU1 1377 aa31.35■■■□□ 2.61
CTSD-206ENST00000497544 ABCA9Q8IUA7 1624 aa31.33■■■□□ 2.61
CTSD-206ENST00000497544 ARHGEF40Q8TER5 1519 aa31.3■■■□□ 2.6
CTSD-206ENST00000497544 MTUS2Q5JR59 1369 aa31.3■■■□□ 2.6
CTSD-206ENST00000497544 PLPPR3Q6T4P5 718 aa31.29■■■□□ 2.6
CTSD-206ENST00000497544 TROQ12816 1431 aaPredicted RBP31.29■■■□□ 2.6
CTSD-206ENST00000497544 MAP3K1Q13233 1512 aa31.29■■■□□ 2.6
CTSD-206ENST00000497544 TIAM1Q13009 1591 aa31.28■■■□□ 2.6
CTSD-206ENST00000497544 NEO1Q92859 1461 aa31.26■■■□□ 2.59
CTSD-206ENST00000497544 KANK4Q5T7N3 995 aaPredicted RBP31.2■■■□□ 2.59
CTSD-206ENST00000497544 SIGLEC1Q9BZZ2 1709 aa31.2■■■□□ 2.58
CTSD-206ENST00000497544 LRRC9Q6ZRR7 1453 aa31.18■■■□□ 2.58
CTSD-206ENST00000497544 STRCQ7RTU9 1775 aa31.16■■■□□ 2.58
CTSD-206ENST00000497544 EHBP1L1Q8N3D4 1523 aa31.16■■■□□ 2.58
CTSD-206ENST00000497544 RICTORQ6R327 1708 aa31.15■■■□□ 2.58
CTSD-206ENST00000497544 FER1L4A9Z1Z3 1794 aa31.15■■■□□ 2.58
CTSD-206ENST00000497544 KIF14Q15058 1648 aa31.15■■■□□ 2.58
CTSD-206ENST00000497544 TTC37Q6PGP7 1564 aa31.13■■■□□ 2.57
CTSD-206ENST00000497544 PREX1Q8TCU6 1659 aa31.13■■■□□ 2.57
CTSD-206ENST00000497544 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.11■■■□□ 2.57
CTSD-206ENST00000497544 FANCAO15360 1455 aa31.1■■■□□ 2.57
CTSD-206ENST00000497544 POGZQ7Z3K3 1410 aa31.09■■■□□ 2.57
CTSD-206ENST00000497544 YEATS2Q9ULM3 1422 aa31.07■■■□□ 2.57
CTSD-206ENST00000497544 SUPT6HQ7KZ85 1726 aaKnown RBP31.05■■■□□ 2.56
CTSD-206ENST00000497544 PPARGC1BQ86YN6 1023 aaKnown RBP31.05■■■□□ 2.56
CTSD-206ENST00000497544 DENND4BO75064 1496 aaPredicted RBP31.02■■■□□ 2.56
CTSD-206ENST00000497544 AKNAQ7Z591 1439 aa31.01■■■□□ 2.55
CTSD-206ENST00000497544 CCNB3Q8WWL7 1395 aa31.01■■■□□ 2.55
CTSD-206ENST00000497544 NCOA2Q15596 1464 aa31.01■■■□□ 2.55
CTSD-206ENST00000497544 DMRT2Q9Y5R5 561 aa30.98■■■□□ 2.55
CTSD-206ENST00000497544 ZMYM4Q5VZL5 1548 aa30.98■■■□□ 2.55
CTSD-206ENST00000497544 PLCH2O75038 1416 aa30.98■■■□□ 2.55
CTSD-206ENST00000497544 MYO5CQ9NQX4 1742 aa30.97■■■□□ 2.55
CTSD-206ENST00000497544 ZFYVE16Q7Z3T8 1539 aa30.97■■■□□ 2.55
CTSD-206ENST00000497544 MLECQ14165 292 aa30.95■■■□□ 2.55
CTSD-206ENST00000497544 EFCAB2Q5VUJ9 269 aa30.94■■■□□ 2.54
CTSD-206ENST00000497544 LTBP4Q8N2S1 1624 aa30.92■■■□□ 2.54
CTSD-206ENST00000497544 GPATCH8Q9UKJ3 1502 aaKnown RBP30.92■■■□□ 2.54
CTSD-206ENST00000497544 CFDP1Q9UEE9 299 aaPredicted RBP30.91■■■□□ 2.54
CTSD-206ENST00000497544 CDC42BPAQ5VT25 1732 aa30.9■■■□□ 2.54
CTSD-206ENST00000497544 ARHGEF12Q9NZN5 1544 aa30.9■■■□□ 2.54
CTSD-206ENST00000497544 ARHGAP5Q13017 1502 aa30.88■■■□□ 2.53
CTSD-206ENST00000497544 IQSEC2Q5JU85 1478 aa30.88■■■□□ 2.53
CTSD-206ENST00000497544 CFAP74Q9C0B2 1584 aa30.88■■■□□ 2.53
CTSD-206ENST00000497544 ZNF777Q9ULD5 760 aaPredicted RBP30.87■■■□□ 2.53
CTSD-206ENST00000497544 CDC42BPBQ9Y5S2 1711 aa30.87■■■□□ 2.53
CTSD-206ENST00000497544 PTPRTO14522 1441 aa30.86■■■□□ 2.53
CTSD-206ENST00000497544 PREX2Q70Z35 1606 aa30.86■■■□□ 2.53
CTSD-206ENST00000497544 ITSN2Q9NZM3 1697 aa30.84■■■□□ 2.53
CTSD-206ENST00000497544 CEBPAP49715 358 aaPredicted RBP30.83■■■□□ 2.53
CTSD-206ENST00000497544 MAGI2Q86UL8 1455 aa30.82■■■□□ 2.52
CTSD-206ENST00000497544 UHRF1BP1Q6BDS2 1440 aa30.81■■■□□ 2.52
CTSD-206ENST00000497544 MYOM3Q5VTT5 1437 aa30.81■■■□□ 2.52
CTSD-206ENST00000497544 SETD1BQ9UPS6 1966 aaKnown RBP30.79■■■□□ 2.52
CTSD-206ENST00000497544 MIA2Q96PC5 1412 aa30.74■■■□□ 2.51
CTSD-206ENST00000497544 ZNF644Q9H582 1327 aaPredicted RBP30.73■■■□□ 2.51
CTSD-206ENST00000497544 SCAPERQ9BY12 1400 aa30.71■■■□□ 2.51
CTSD-206ENST00000497544 FGD6Q6ZV73 1430 aa30.69■■■□□ 2.5
CTSD-206ENST00000497544 PLEKHH2Q8IVE3 1493 aa30.68■■■□□ 2.5
CTSD-206ENST00000497544 SAMD9LQ8IVG5 1584 aa30.67■■■□□ 2.5
CTSD-206ENST00000497544 HNRNPMP52272 730 aaKnown RBP eCLIP30.67■■■□□ 2.5
CTSD-206ENST00000497544 ATP10AO60312 1499 aa30.67■■■□□ 2.5
CTSD-206ENST00000497544 C9orf84Q5VXU9 1444 aa30.66■■■□□ 2.5
CTSD-206ENST00000497544 KIAA1107Q9UPP5 1409 aa30.64■■■□□ 2.49
CTSD-206ENST00000497544 CAMSAP2Q08AD1 1489 aa30.63■■■□□ 2.49
CTSD-206ENST00000497544 FAM50AQ14320 339 aaKnown RBP30.63■■■□□ 2.49
CTSD-206ENST00000497544 MED1Q15648 1581 aaPredicted RBP30.62■■■□□ 2.49
CTSD-206ENST00000497544 PTPN23Q9H3S7 1636 aa30.62■■■□□ 2.49
CTSD-206ENST00000497544 C3P01024 1663 aa30.62■■■□□ 2.49
CTSD-206ENST00000497544 ABCC1P33527 1531 aa30.62■■■□□ 2.49
CTSD-206ENST00000497544 RSPH4AQ5TD94 716 aa30.6■■■□□ 2.49
CTSD-206ENST00000497544 SYCP2Q9BX26 1530 aa30.58■■■□□ 2.49
CTSD-206ENST00000497544 NCOA1Q15788 1441 aa30.58■■■□□ 2.49
CTSD-206ENST00000497544 AFAP1Q8N556 730 aa30.58■■■□□ 2.49
CTSD-206ENST00000497544 UBAP1LF5GYI3 381 aa30.57■■■□□ 2.48
CTSD-206ENST00000497544 TCOF1Q13428 1488 aaKnown RBP30.57■■■□□ 2.48
CTSD-206ENST00000497544 TRAPPC8Q9Y2L5 1435 aa30.56■■■□□ 2.48
CTSD-206ENST00000497544 MYT1LQ9UL68 1186 aa30.55■■■□□ 2.48
CTSD-206ENST00000497544 ZNF518AQ6AHZ1 1483 aa30.53■■■□□ 2.48
CTSD-206ENST00000497544 MBD5Q9P267 1494 aa30.53■■■□□ 2.48
CTSD-206ENST00000497544 TSPY4P0CV99 314 aa30.51■■■□□ 2.47
CTSD-206ENST00000497544 TSPY10P0CW01 314 aa30.51■■■□□ 2.47
CTSD-206ENST00000497544 RRBP1Q9P2E9 1410 aaKnown RBP30.5■■■□□ 2.47
CTSD-206ENST00000497544 SPAG9O60271 1321 aaKnown RBP30.47■■■□□ 2.47
CTSD-206ENST00000497544 ARHGEF5Q12774 1597 aa30.47■■■□□ 2.47
CTSD-206ENST00000497544 CCDC141Q6ZP82 1450 aa30.46■■■□□ 2.47
CTSD-206ENST00000497544 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.46■■■□□ 2.47
CTSD-206ENST00000497544 ZNF335Q9H4Z2 1342 aaPredicted RBP30.46■■■□□ 2.47
CTSD-206ENST00000497544 CAMSAP1Q5T5Y3 1602 aa30.44■■■□□ 2.46
CTSD-206ENST00000497544 ITGAEP38570 1179 aa30.42■■■□□ 2.46
CTSD-206ENST00000497544 KDM5CP41229 1560 aa30.41■■■□□ 2.46
CTSD-206ENST00000497544 ABCC5O15440 1437 aa30.4■■■□□ 2.46
CTSD-206ENST00000497544 DAPK1P53355 1430 aa30.4■■■□□ 2.46
CTSD-206ENST00000497544 DIP2CQ9Y2E4 1556 aa30.39■■■□□ 2.46
CTSD-206ENST00000497544 DNMT1P26358 1616 aaKnown RBP30.39■■■□□ 2.46
CTSD-206ENST00000497544 MLH3Q9UHC1 1453 aa30.38■■■□□ 2.45
CTSD-206ENST00000497544 REREQ9P2R6 1566 aa30.37■■■□□ 2.45
CTSD-206ENST00000497544 HSPA1LP34931 641 aa30.37■■■□□ 2.45
CTSD-206ENST00000497544 CHIC2Q9UKJ5 165 aa30.36■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms