RNA–Protein interactions for RNA: ENST00000497018.1

UBR4-217, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 183 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-217ENST00000497018 MTMR7Q9Y216 660 aa3.17□□□□□ -1.9
UBR4-217ENST00000497018 ZNF316A6NFI3 1004 aaPredicted RBP3.16□□□□□ -1.9
UBR4-217ENST00000497018 MLLT3P42568 568 aaPredicted RBP3.16□□□□□ -1.9
UBR4-217ENST00000497018 MCM6Q14566 821 aa3.16□□□□□ -1.9
UBR4-217ENST00000497018 FNBP4Q8N3X1 1017 aaPredicted RBP3.16□□□□□ -1.9
UBR4-217ENST00000497018 GOPCQ9HD26 462 aa3.16□□□□□ -1.9
UBR4-217ENST00000497018 CREBZFQ9NS37 354 aa3.16□□□□□ -1.9
UBR4-217ENST00000497018 CC2D2AQ9P2K1 1620 aa3.15□□□□□ -1.9
UBR4-217ENST00000497018 PYGBP11216 843 aa3.15□□□□□ -1.91
UBR4-217ENST00000497018 MFAP1P55081 439 aaKnown RBP3.15□□□□□ -1.91
UBR4-217ENST00000497018 AMHR2Q16671 573 aa3.15□□□□□ -1.91
UBR4-217ENST00000497018 PARP9Q8IXQ6 854 aa3.15□□□□□ -1.91
UBR4-217ENST00000497018 AKT1S1Q96B36 256 aa3.15□□□□□ -1.91
UBR4-217ENST00000497018 ZNF428Q96B54 188 aa3.15□□□□□ -1.91
UBR4-217ENST00000497018 DDRGK1Q96HY6 314 aa3.15□□□□□ -1.91
UBR4-217ENST00000497018 CRISPLD2Q9H0B8 497 aa3.15□□□□□ -1.91
UBR4-217ENST00000497018 CLEC11AQ9Y240 323 aa3.15□□□□□ -1.91
UBR4-217ENST00000497018 RB1CC1Q8TDY2 1594 aa3.14□□□□□ -1.91
UBR4-217ENST00000497018 PDAP1Q13442 181 aaKnown RBP3.14□□□□□ -1.91
UBR4-217ENST00000497018 IRF5Q13568 498 aa3.14□□□□□ -1.91
UBR4-217ENST00000497018 TMCO4Q5TGY1 634 aa3.14□□□□□ -1.91
UBR4-217ENST00000497018 FOXD4L5Q5VV16 416 aaPredicted RBP3.14□□□□□ -1.91
UBR4-217ENST00000497018 ZNF467Q7Z7K2 595 aaPredicted RBP3.14□□□□□ -1.91
UBR4-217ENST00000497018 RETREG2Q8NC44 543 aa3.14□□□□□ -1.91
UBR4-217ENST00000497018 FOXD4L4Q8WXT5 416 aaPredicted RBP3.14□□□□□ -1.91
UBR4-217ENST00000497018 PROSER2Q86WR7 435 aaPredicted RBP3.13□□□□□ -1.91
UBR4-217ENST00000497018 PELP1Q8IZL8 1130 aaKnown RBP3.13□□□□□ -1.91
UBR4-217ENST00000497018 KRI1Q8N9T8 703 aaKnown RBP3.13□□□□□ -1.91
UBR4-217ENST00000497018 CACNB1Q02641 598 aaPredicted RBP3.12□□□□□ -1.91
UBR4-217ENST00000497018 CCDC102AQ96A19 550 aa3.12□□□□□ -1.91
UBR4-217ENST00000497018 PLSCR2Q9NRY7 297 aa3.12□□□□□ -1.91
UBR4-217ENST00000497018 ERCC6Q03468 1493 aa3.11□□□□□ -1.91
UBR4-217ENST00000497018 MAP2K5Q13163 448 aa3.11□□□□□ -1.91
UBR4-217ENST00000497018 AEBP1Q8IUX7 1158 aa3.11□□□□□ -1.91
UBR4-217ENST00000497018 OXER1Q8TDS5 423 aa3.11□□□□□ -1.91
UBR4-217ENST00000497018 POM121Q96HA1 1249 aa3.11□□□□□ -1.91
UBR4-217ENST00000497018 LARP6Q9BRS8 491 aaKnown RBP3.11□□□□□ -1.91
UBR4-217ENST00000497018 GZF1Q9H116 711 aaPredicted RBP3.11□□□□□ -1.91
UBR4-217ENST00000497018 SERPINA10Q9UK55 444 aa3.11□□□□□ -1.91
UBR4-217ENST00000497018 RBM25P49756 843 aaKnown RBP3.1□□□□□ -1.91
UBR4-217ENST00000497018 PDIA6Q15084 440 aa3.1□□□□□ -1.91
UBR4-217ENST00000497018 FBXO41Q8TF61 875 aa3.1□□□□□ -1.91
UBR4-217ENST00000497018 CCDC97Q96F63 343 aaPredicted RBP3.1□□□□□ -1.91
UBR4-217ENST00000497018 DDX27Q96GQ7 796 aaKnown RBP3.1□□□□□ -1.91
UBR4-217ENST00000497018 ZNF777Q9ULD5 760 aaPredicted RBP3.1□□□□□ -1.91
UBR4-217ENST00000497018 PHF8Q9UPP1 1060 aa3.1□□□□□ -1.91
UBR4-217ENST00000497018 MINK1Q8N4C8 1332 aaPredicted RBP3.1□□□□□ -1.91
UBR4-217ENST00000497018 DISP3Q9P2K9 1392 aa3.1□□□□□ -1.91
UBR4-217ENST00000497018 SHROOM4Q9ULL8 1493 aa3.09□□□□□ -1.91
UBR4-217ENST00000497018 PAK3O75914 559 aaPredicted RBP3.09□□□□□ -1.91
UBR4-217ENST00000497018 MS4A1P11836 297 aa3.09□□□□□ -1.91
UBR4-217ENST00000497018 PDE4AP27815 886 aa3.09□□□□□ -1.91
UBR4-217ENST00000497018 PSEN1P49768 467 aa3.09□□□□□ -1.91
UBR4-217ENST00000497018 NLRP6P59044 892 aa3.09□□□□□ -1.91
UBR4-217ENST00000497018 SH3D19Q5HYK7 790 aa3.09□□□□□ -1.91
UBR4-217ENST00000497018 ILDR2Q71H61 639 aa3.09□□□□□ -1.91
UBR4-217ENST00000497018 MS4A4AQ96JQ5 239 aa3.09□□□□□ -1.91
UBR4-217ENST00000497018 PUS7Q96PZ0 661 aaKnown RBP3.09□□□□□ -1.91
UBR4-217ENST00000497018 UNC13AQ9UPW8 1703 aa3.09□□□□□ -1.91
UBR4-217ENST00000497018 ERCC6L2Q5T890 1561 aa3.08□□□□□ -1.92
UBR4-217ENST00000497018 IRF6O14896 467 aa3.08□□□□□ -1.92
UBR4-217ENST00000497018 POTEDQ86YR6 584 aa3.08□□□□□ -1.92
UBR4-217ENST00000497018 REM2Q8IYK8 340 aaPredicted RBP3.08□□□□□ -1.92
UBR4-217ENST00000497018 EFCAB3Q8N7B9 438 aa3.08□□□□□ -1.92
UBR4-217ENST00000497018 IGSF5Q9NSI5 407 aa3.08□□□□□ -1.92
UBR4-217ENST00000497018 PCDHB8Q9UN66 801 aa3.08□□□□□ -1.92
UBR4-217ENST00000497018 PCDHB13Q9Y5F0 798 aa3.08□□□□□ -1.92
UBR4-217ENST00000497018 SOX12O15370 315 aa3.07□□□□□ -1.92
UBR4-217ENST00000497018 HSP90B1P14625 803 aaKnown RBP3.07□□□□□ -1.92
UBR4-217ENST00000497018 ZNF579Q8NAF0 562 aaKnown RBP3.07□□□□□ -1.92
UBR4-217ENST00000497018 PCMTD1Q96MG8 357 aaPredicted RBP3.07□□□□□ -1.92
UBR4-217ENST00000497018 TMUB1Q9BVT8 246 aa3.07□□□□□ -1.92
UBR4-217ENST00000497018 EMILIN3Q9NT22 766 aa3.07□□□□□ -1.92
UBR4-217ENST00000497018 AMOTL2Q9Y2J4 779 aa3.07□□□□□ -1.92
UBR4-217ENST00000497018 COG6Q9Y2V7 657 aa3.07□□□□□ -1.92
UBR4-217ENST00000497018 TTBK1Q5TCY1 1321 aaPredicted RBP3.07□□□□□ -1.92
UBR4-217ENST00000497018 SPDYE5A6NIY4 337 aa3.06□□□□□ -1.92
UBR4-217ENST00000497018 RIMBP3CA6NJZ7 1639 aa3.06□□□□□ -1.92
UBR4-217ENST00000497018 RIMBP3BA6NNM3 1639 aa3.06□□□□□ -1.92
UBR4-217ENST00000497018 SPDYE16A6NNV3 312 aaPredicted RBP3.06□□□□□ -1.92
UBR4-217ENST00000497018 E9PSI1 815 aa3.06□□□□□ -1.92
UBR4-217ENST00000497018 DPYSL4O14531 572 aa3.06□□□□□ -1.92
UBR4-217ENST00000497018 PPP1R15AO75807 674 aaPredicted RBP3.06□□□□□ -1.92
UBR4-217ENST00000497018 GIGYF2Q6Y7W6 1299 aaKnown RBP3.06□□□□□ -1.92
UBR4-217ENST00000497018 REPIN1Q9BWE0 567 aaKnown RBP3.06□□□□□ -1.92
UBR4-217ENST00000497018 TSPYL2Q9H2G4 693 aaPredicted RBP3.06□□□□□ -1.92
UBR4-217ENST00000497018 RIMBP3Q9UFD9 1639 aa3.06□□□□□ -1.92
UBR4-217ENST00000497018 GNPATO15228 680 aa3.05□□□□□ -1.92
UBR4-217ENST00000497018 HMGB1P09429 215 aaKnown RBP3.05□□□□□ -1.92
UBR4-217ENST00000497018 CDK11BP21127 795 aaKnown RBP3.05□□□□□ -1.92
UBR4-217ENST00000497018 FECHP22830 423 aa3.05□□□□□ -1.92
UBR4-217ENST00000497018 MYT1Q01538 1121 aa3.05□□□□□ -1.92
UBR4-217ENST00000497018 KCNA1Q09470 495 aa3.05□□□□□ -1.92
UBR4-217ENST00000497018 PPP1R15BQ5SWA1 713 aa3.05□□□□□ -1.92
UBR4-217ENST00000497018 FBXW7Q969H0 707 aa3.05□□□□□ -1.92
UBR4-217ENST00000497018 CDK11AQ9UQ88 783 aaPredicted RBP3.05□□□□□ -1.92
UBR4-217ENST00000497018 PATL2C9JE40 543 aaKnown RBP3.04□□□□□ -1.92
UBR4-217ENST00000497018 GOLGA2Q08379 1002 aa3.04□□□□□ -1.92
UBR4-217ENST00000497018 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.04□□□□□ -1.92
UBR4-217ENST00000497018 CABP2Q9NPB3 220 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms