RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 BAZ1AQ9NRL2 1556 aaPredicted RBP25.51■■□□□ 1.67
RNF40-203ENST00000493683 LMOD2Q6P5Q4 547 aa25.51■■□□□ 1.67
RNF40-203ENST00000493683 GOLGA2Q08379 1002 aa25.5■■□□□ 1.67
RNF40-203ENST00000493683 NAP1L2Q9ULW6 460 aaPredicted RBP25.5■■□□□ 1.67
RNF40-203ENST00000493683 ARHGAP35Q9NRY4 1499 aa25.5■■□□□ 1.67
RNF40-203ENST00000493683 HSPA5P11021 654 aaKnown RBP25.49■■□□□ 1.67
RNF40-203ENST00000493683 RWDD1Q9H446 243 aaPredicted RBP25.49■■□□□ 1.67
RNF40-203ENST00000493683 CHMP4AQ9BY43 222 aa25.48■■□□□ 1.67
RNF40-203ENST00000493683 VPS8Q8N3P4 1428 aa25.47■■□□□ 1.67
RNF40-203ENST00000493683 HTATSF1O43719 755 aaKnown RBP25.47■■□□□ 1.67
RNF40-203ENST00000493683 CARMIL1Q5VZK9 1371 aa25.46■■□□□ 1.67
RNF40-203ENST00000493683 DRC7Q8IY82 874 aa25.46■■□□□ 1.67
RNF40-203ENST00000493683 NPHP1O15259 732 aa25.45■■□□□ 1.67
RNF40-203ENST00000493683 SYAP1Q96A49 352 aaPredicted RBP25.44■■□□□ 1.66
RNF40-203ENST00000493683 RCAN3Q9UKA8 241 aa25.44■■□□□ 1.66
RNF40-203ENST00000493683 KIAA2012Q0VF49 1180 aa25.44■■□□□ 1.66
RNF40-203ENST00000493683 KIAA1211Q6ZU35 1233 aa25.44■■□□□ 1.66
RNF40-203ENST00000493683 RTF1Q92541 710 aaKnown RBP25.44■■□□□ 1.66
RNF40-203ENST00000493683 ERCC6Q03468 1493 aa25.43■■□□□ 1.66
RNF40-203ENST00000493683 SRPK2P78362 688 aaKnown RBP25.43■■□□□ 1.66
RNF40-203ENST00000493683 PMFBP1Q8TBY8 1022 aa25.41■■□□□ 1.66
RNF40-203ENST00000493683 HDGFL2Q7Z4V5 671 aaPredicted RBP25.41■■□□□ 1.66
RNF40-203ENST00000493683 TULP1O00294 542 aaPredicted RBP25.36■■□□□ 1.65
RNF40-203ENST00000493683 GNL2Q13823 731 aaKnown RBP25.34■■□□□ 1.65
RNF40-203ENST00000493683 CUX2O14529 1486 aa25.34■■□□□ 1.65
RNF40-203ENST00000493683 HDAC5Q9UQL6 1122 aa25.34■■□□□ 1.65
RNF40-203ENST00000493683 EIF3AQ14152 1382 aaKnown RBP25.33■■□□□ 1.65
RNF40-203ENST00000493683 PDE3BQ13370 1112 aa25.33■■□□□ 1.65
RNF40-203ENST00000493683 PKD2Q13563 968 aa25.32■■□□□ 1.64
RNF40-203ENST00000493683 TAOK2Q9UL54 1235 aa25.32■■□□□ 1.64
RNF40-203ENST00000493683 EIF4G1Q04637 1599 aaKnown RBP25.3■■□□□ 1.64
RNF40-203ENST00000493683 SPRYD3Q8NCJ5 442 aa25.3■■□□□ 1.64
RNF40-203ENST00000493683 ROCK2O75116 1388 aaKnown RBP25.3■■□□□ 1.64
RNF40-203ENST00000493683 TPM4P67936 248 aa25.29■■□□□ 1.64
RNF40-203ENST00000493683 CSPP1Q1MSJ5 1256 aa25.29■■□□□ 1.64
RNF40-203ENST00000493683 CCDC34Q96HJ3 373 aa25.27■■□□□ 1.64
RNF40-203ENST00000493683 IPO9Q96P70 1041 aaKnown RBP25.27■■□□□ 1.64
RNF40-203ENST00000493683 ITPRIPQ8IWB1 547 aa25.27■■□□□ 1.64
RNF40-203ENST00000493683 PHLDB1Q86UU1 1377 aa25.27■■□□□ 1.64
RNF40-203ENST00000493683 GOLGA6L3A6NEY3 463 aa25.27■■□□□ 1.64
RNF40-203ENST00000493683 FMN1Q68DA7 1419 aa25.26■■□□□ 1.63
RNF40-203ENST00000493683 HMMRO75330 724 aa25.25■■□□□ 1.63
RNF40-203ENST00000493683 U2AF1L5P0DN76 240 aaPredicted RBP25.24■■□□□ 1.63
RNF40-203ENST00000493683 U2AF1Q01081 240 aaKnown RBP eCLIP25.24■■□□□ 1.63
RNF40-203ENST00000493683 ANKRD30AQ9BXX3 1397 aa25.23■■□□□ 1.63
RNF40-203ENST00000493683 SOGA1O94964 1423 aa25.23■■□□□ 1.63
RNF40-203ENST00000493683 RAB3GAP2Q9H2M9 1393 aa25.23■■□□□ 1.63
RNF40-203ENST00000493683 CARMIL2Q6F5E8 1435 aa25.23■■□□□ 1.63
RNF40-203ENST00000493683 GPATCH3Q96I76 525 aa25.22■■□□□ 1.63
RNF40-203ENST00000493683 MPHOSPH9Q99550 1183 aa25.22■■□□□ 1.63
RNF40-203ENST00000493683 STK31Q9BXU1 1019 aa25.19■■□□□ 1.62
RNF40-203ENST00000493683 SPAG9O60271 1321 aaKnown RBP25.18■■□□□ 1.62
RNF40-203ENST00000493683 NLRP13Q86W25 1043 aa25.18■■□□□ 1.62
RNF40-203ENST00000493683 SLKQ9H2G2 1235 aaPredicted RBP25.18■■□□□ 1.62
RNF40-203ENST00000493683 USP35Q9P2H5 1018 aa25.18■■□□□ 1.62
RNF40-203ENST00000493683 PHF14O94880 888 aa25.16■■□□□ 1.62
RNF40-203ENST00000493683 LMOD3Q0VAK6 560 aa25.16■■□□□ 1.62
RNF40-203ENST00000493683 NUP155O75694 1391 aa25.15■■□□□ 1.62
RNF40-203ENST00000493683 APBB1O00213 710 aa25.13■■□□□ 1.61
RNF40-203ENST00000493683 SMC4Q9NTJ3 1288 aa25.13■■□□□ 1.61
RNF40-203ENST00000493683 GZF1Q9H116 711 aaPredicted RBP25.13■■□□□ 1.61
RNF40-203ENST00000493683 TSHZ2Q9NRE2 1034 aa25.13■■□□□ 1.61
RNF40-203ENST00000493683 TERF2IPQ9NYB0 399 aa25.13■■□□□ 1.61
RNF40-203ENST00000493683 MFAP1P55081 439 aaKnown RBP25.12■■□□□ 1.61
RNF40-203ENST00000493683 CENPJQ9HC77 1338 aaPredicted RBP25.11■■□□□ 1.61
RNF40-203ENST00000493683 MLECQ14165 292 aa25.11■■□□□ 1.61
RNF40-203ENST00000493683 SOX12O15370 315 aa25.1■■□□□ 1.61
RNF40-203ENST00000493683 SAFB2Q14151 953 aaKnown RBP eCLIP25.1■■□□□ 1.61
RNF40-203ENST00000493683 DDX11L8A8MPP1 907 aa25.1■■□□□ 1.61
RNF40-203ENST00000493683 KIF3AQ9Y496 699 aa25.09■■□□□ 1.61
RNF40-203ENST00000493683 RSPH4AQ5TD94 716 aa25.09■■□□□ 1.61
RNF40-203ENST00000493683 EFCAB2Q5VUJ9 269 aa25.09■■□□□ 1.61
RNF40-203ENST00000493683 ST18O60284 1047 aa25.08■■□□□ 1.61
RNF40-203ENST00000493683 GGT6Q6P531 493 aa25.08■■□□□ 1.61
RNF40-203ENST00000493683 CLSTN1O94985 981 aa25.08■■□□□ 1.61
RNF40-203ENST00000493683 KANK4Q5T7N3 995 aaPredicted RBP25.08■■□□□ 1.61
RNF40-203ENST00000493683 TRHP20396 242 aaPredicted RBP25.07■■□□□ 1.6
RNF40-203ENST00000493683 CHMP4CQ96CF2 233 aa25.06■■□□□ 1.6
RNF40-203ENST00000493683 STK26Q9P289 416 aa25.06■■□□□ 1.6
RNF40-203ENST00000493683 KIF15Q9NS87 1388 aa25.06■■□□□ 1.6
RNF40-203ENST00000493683 GOLGA6L1Q8N7Z2 621 aa25.06■■□□□ 1.6
RNF40-203ENST00000493683 NOC3LQ8WTT2 800 aaKnown RBP25.05■■□□□ 1.6
RNF40-203ENST00000493683 ISY1Q9ULR0 285 aaKnown RBP25.04■■□□□ 1.6
RNF40-203ENST00000493683 GORABQ5T7V8 394 aa25.02■■□□□ 1.6
RNF40-203ENST00000493683 CENPQQ7L2Z9 268 aaPredicted RBP25.02■■□□□ 1.6
RNF40-203ENST00000493683 TRIM6-TRIM34B2RNG4 842 aa25.01■■□□□ 1.59
RNF40-203ENST00000493683 FOXD1Q16676 465 aa25.01■■□□□ 1.59
RNF40-203ENST00000493683 SKOR2Q2VWA4 1001 aaPredicted RBP25■■□□□ 1.59
RNF40-203ENST00000493683 MYBBP1AQ9BQG0 1328 aaKnown RBP25■■□□□ 1.59
RNF40-203ENST00000493683 HSP90B1P14625 803 aaKnown RBP25■■□□□ 1.59
RNF40-203ENST00000493683 CECR2Q9BXF3 1484 aa25■■□□□ 1.59
RNF40-203ENST00000493683 TNNT3P45378 269 aaPredicted RBP24.99■■□□□ 1.59
RNF40-203ENST00000493683 KIF16BQ96L93 1317 aa24.98■■□□□ 1.59
RNF40-203ENST00000493683 L3MBTL2Q969R5 705 aa24.98■■□□□ 1.59
RNF40-203ENST00000493683 ATP6V1DQ9Y5K8 247 aa24.96■■□□□ 1.59
RNF40-203ENST00000493683 CSB-PGBD3P0DP91 1061 aa24.94■■□□□ 1.58
RNF40-203ENST00000493683 CCDC18Q5T9S5 1454 aa24.94■■□□□ 1.58
RNF40-203ENST00000493683 FAM161AQ3B820 660 aa24.94■■□□□ 1.58
RNF40-203ENST00000493683 CCDC88BA6NC98 1476 aa24.94■■□□□ 1.58
RNF40-203ENST00000493683 PDS5BQ9NTI5 1447 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms