RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 RIMS1Q86UR5 1692 aaKnown RBP28.68■■■□□ 2.18
COL9A1-210ENST00000493682 PCF11O94913 1555 aaKnown RBP28.67■■■□□ 2.18
COL9A1-210ENST00000493682 SIGLEC1Q9BZZ2 1709 aa28.66■■■□□ 2.18
COL9A1-210ENST00000493682 EFCAB2Q5VUJ9 269 aa28.65■■■□□ 2.18
COL9A1-210ENST00000493682 LMTK3Q96Q04 1460 aa28.65■■■□□ 2.18
COL9A1-210ENST00000493682 MYO5CQ9NQX4 1742 aa28.63■■■□□ 2.17
COL9A1-210ENST00000493682 KIF14Q15058 1648 aa28.63■■■□□ 2.17
COL9A1-210ENST00000493682 TROQ12816 1431 aaPredicted RBP28.61■■■□□ 2.17
COL9A1-210ENST00000493682 MLECQ14165 292 aa28.58■■■□□ 2.17
COL9A1-210ENST00000493682 PLPPR3Q6T4P5 718 aa28.57■■■□□ 2.16
COL9A1-210ENST00000493682 CLIP1P30622 1438 aa28.57■■■□□ 2.16
COL9A1-210ENST00000493682 ATP10AO60312 1499 aa28.56■■■□□ 2.16
COL9A1-210ENST00000493682 LRRIQ1Q96JM4 1722 aa28.56■■■□□ 2.16
COL9A1-210ENST00000493682 ARHGAP5Q13017 1502 aa28.53■■■□□ 2.16
COL9A1-210ENST00000493682 C9orf84Q5VXU9 1444 aa28.52■■■□□ 2.16
COL9A1-210ENST00000493682 ZNF518AQ6AHZ1 1483 aa28.51■■■□□ 2.15
COL9A1-210ENST00000493682 AFAP1Q8N556 730 aa28.5■■■□□ 2.15
COL9A1-210ENST00000493682 FBXO41Q8TF61 875 aa28.5■■■□□ 2.15
COL9A1-210ENST00000493682 FER1L4A9Z1Z3 1794 aa28.5■■■□□ 2.15
COL9A1-210ENST00000493682 HSPA2P54652 639 aa28.49■■■□□ 2.15
COL9A1-210ENST00000493682 CASKIN1Q8WXD9 1431 aa28.48■■■□□ 2.15
COL9A1-210ENST00000493682 ARHGEF12Q9NZN5 1544 aa28.48■■■□□ 2.15
COL9A1-210ENST00000493682 KDM5CP41229 1560 aa28.46■■■□□ 2.15
COL9A1-210ENST00000493682 CCDC18Q5T9S5 1454 aa28.44■■■□□ 2.14
COL9A1-210ENST00000493682 CDC42BPBQ9Y5S2 1711 aa28.43■■■□□ 2.14
COL9A1-210ENST00000493682 MYT1LQ9UL68 1186 aa28.41■■■□□ 2.14
COL9A1-210ENST00000493682 PREX2Q70Z35 1606 aa28.39■■■□□ 2.13
COL9A1-210ENST00000493682 DIP2CQ9Y2E4 1556 aa28.37■■■□□ 2.13
COL9A1-210ENST00000493682 MLH3Q9UHC1 1453 aa28.36■■■□□ 2.13
COL9A1-210ENST00000493682 CEBPAP49715 358 aaPredicted RBP28.36■■■□□ 2.13
COL9A1-210ENST00000493682 TRAPPC8Q9Y2L5 1435 aa28.35■■■□□ 2.13
COL9A1-210ENST00000493682 ABCC1P33527 1531 aa28.35■■■□□ 2.13
COL9A1-210ENST00000493682 FYCO1Q9BQS8 1478 aa28.34■■■□□ 2.13
COL9A1-210ENST00000493682 REREQ9P2R6 1566 aa28.33■■■□□ 2.13
COL9A1-210ENST00000493682 ABCA6Q8N139 1617 aa28.32■■■□□ 2.12
COL9A1-210ENST00000493682 ITSN2Q9NZM3 1697 aa28.3■■■□□ 2.12
COL9A1-210ENST00000493682 CDC42BPAQ5VT25 1732 aa28.29■■■□□ 2.12
COL9A1-210ENST00000493682 PREX1Q8TCU6 1659 aa28.29■■■□□ 2.12
COL9A1-210ENST00000493682 AGLP35573 1532 aa28.26■■■□□ 2.11
COL9A1-210ENST00000493682 KIDINS220Q9ULH0 1771 aa28.22■■■□□ 2.11
COL9A1-210ENST00000493682 ZNF777Q9ULD5 760 aaPredicted RBP28.22■■■□□ 2.11
COL9A1-210ENST00000493682 GPATCH8Q9UKJ3 1502 aaKnown RBP28.21■■■□□ 2.11
COL9A1-210ENST00000493682 SAMD9LQ8IVG5 1584 aa28.2■■■□□ 2.1
COL9A1-210ENST00000493682 UHRF1BP1Q6BDS2 1440 aa28.19■■■□□ 2.1
COL9A1-210ENST00000493682 CERKQ8TCT0 537 aa28.18■■■□□ 2.1
COL9A1-210ENST00000493682 ESF1Q9H501 851 aaKnown RBP28.18■■■□□ 2.1
COL9A1-210ENST00000493682 C3P01024 1663 aa28.16■■■□□ 2.1
COL9A1-210ENST00000493682 SYCP2Q9BX26 1530 aa28.16■■■□□ 2.1
COL9A1-210ENST00000493682 HNRNPMP52272 730 aaKnown RBP eCLIP28.15■■■□□ 2.1
COL9A1-210ENST00000493682 SETD1BQ9UPS6 1966 aaKnown RBP28.15■■■□□ 2.1
COL9A1-210ENST00000493682 SPAG9O60271 1321 aaKnown RBP28.14■■■□□ 2.09
COL9A1-210ENST00000493682 STRCQ7RTU9 1775 aa28.13■■■□□ 2.09
COL9A1-210ENST00000493682 CNTLNQ9NXG0 1405 aa28.11■■■□□ 2.09
COL9A1-210ENST00000493682 CFDP1Q9UEE9 299 aaPredicted RBP28.11■■■□□ 2.09
COL9A1-210ENST00000493682 DMRT2Q9Y5R5 561 aa28.11■■■□□ 2.09
COL9A1-210ENST00000493682 CCNB3Q8WWL7 1395 aa28.11■■■□□ 2.09
COL9A1-210ENST00000493682 KIAA1107Q9UPP5 1409 aa28.1■■■□□ 2.09
COL9A1-210ENST00000493682 MTUS2Q5JR59 1369 aa28.09■■■□□ 2.09
COL9A1-210ENST00000493682 PLEKHH2Q8IVE3 1493 aa28.08■■■□□ 2.09
COL9A1-210ENST00000493682 ATP7AQ04656 1500 aa28.06■■■□□ 2.08
COL9A1-210ENST00000493682 INO80Q9ULG1 1556 aaPredicted RBP28.03■■■□□ 2.08
COL9A1-210ENST00000493682 SUPT6HQ7KZ85 1726 aaKnown RBP28.02■■■□□ 2.08
COL9A1-210ENST00000493682 A2MP01023 1474 aa28■■■□□ 2.07
COL9A1-210ENST00000493682 MROH2AA6NES4 1674 aa28■■■□□ 2.07
COL9A1-210ENST00000493682 PTPRTO14522 1441 aa28■■■□□ 2.07
COL9A1-210ENST00000493682 ZMYM3Q14202 1370 aa27.99■■■□□ 2.07
COL9A1-210ENST00000493682 PLXNC1O60486 1568 aa27.99■■■□□ 2.07
COL9A1-210ENST00000493682 NPATQ14207 1427 aa27.98■■■□□ 2.07
COL9A1-210ENST00000493682 TIAM1Q13009 1591 aa27.98■■■□□ 2.07
COL9A1-210ENST00000493682 ZNF644Q9H582 1327 aaPredicted RBP27.97■■■□□ 2.07
COL9A1-210ENST00000493682 EHBP1L1Q8N3D4 1523 aa27.97■■■□□ 2.07
COL9A1-210ENST00000493682 NCOA1Q15788 1441 aa27.94■■■□□ 2.06
COL9A1-210ENST00000493682 CEP162Q5TB80 1403 aa27.94■■■□□ 2.06
COL9A1-210ENST00000493682 PHF23Q9BUL5 403 aaPredicted RBP27.94■■■□□ 2.06
COL9A1-210ENST00000493682 MBD5Q9P267 1494 aa27.93■■■□□ 2.06
COL9A1-210ENST00000493682 CLTCQ00610 1675 aaKnown RBP27.92■■■□□ 2.06
COL9A1-210ENST00000493682 GGT6Q6P531 493 aa27.91■■■□□ 2.06
COL9A1-210ENST00000493682 ADGBQ8N7X0 1667 aa27.89■■■□□ 2.06
COL9A1-210ENST00000493682 CAMSAP1Q5T5Y3 1602 aa27.88■■■□□ 2.05
COL9A1-210ENST00000493682 RTEL1-TNFRSF6BF6WH68 1400 aa27.85■■■□□ 2.05
COL9A1-210ENST00000493682 PTPRKQ15262 1439 aa27.85■■■□□ 2.05
COL9A1-210ENST00000493682 PPP6R1Q9UPN7 881 aa27.85■■■□□ 2.05
COL9A1-210ENST00000493682 LTBP4Q8N2S1 1624 aa27.83■■■□□ 2.05
COL9A1-210ENST00000493682 MYO3AQ8NEV4 1616 aa27.81■■■□□ 2.04
COL9A1-210ENST00000493682 NCKAP5LQ9HCH0 1330 aa27.81■■■□□ 2.04
COL9A1-210ENST00000493682 NCOA2Q15596 1464 aa27.81■■■□□ 2.04
COL9A1-210ENST00000493682 DHX29Q7Z478 1369 aaKnown RBP27.8■■■□□ 2.04
COL9A1-210ENST00000493682 ZNF142P52746 1687 aaPredicted RBP27.79■■■□□ 2.04
COL9A1-210ENST00000493682 CEP170BQ9Y4F5 1589 aaPredicted RBP27.77■■■□□ 2.04
COL9A1-210ENST00000493682 CAMSAP2Q08AD1 1489 aa27.77■■■□□ 2.04
COL9A1-210ENST00000493682 CCDC141Q6ZP82 1450 aa27.76■■■□□ 2.04
COL9A1-210ENST00000493682 PLA2R1Q13018 1463 aa27.76■■■□□ 2.03
COL9A1-210ENST00000493682 PKD2Q13563 968 aa27.74■■■□□ 2.03
COL9A1-210ENST00000493682 RSPH4AQ5TD94 716 aa27.74■■■□□ 2.03
COL9A1-210ENST00000493682 IQSEC2Q5JU85 1478 aa27.73■■■□□ 2.03
COL9A1-210ENST00000493682 KIF3BO15066 747 aa27.73■■■□□ 2.03
COL9A1-210ENST00000493682 SENP3Q9H4L4 574 aaPredicted RBP27.72■■■□□ 2.03
COL9A1-210ENST00000493682 TCOF1Q13428 1488 aaKnown RBP27.71■■■□□ 2.03
COL9A1-210ENST00000493682 ZNF335Q9H4Z2 1342 aaPredicted RBP27.69■■■□□ 2.02
COL9A1-210ENST00000493682 A2ML1A8K2U0 1454 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms