RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CYB5RLQ6IPT4 315 aa14.55□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 TMC1Q8TDI8 760 aa14.54□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 CCDC18Q5T9S5 1454 aa14.54□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 RRBP1Q9P2E9 1410 aaKnown RBP14.53□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 PCF11O94913 1555 aaKnown RBP14.53□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 MYOM3Q5VTT5 1437 aa14.52□□□□□ -0.08
MSH5-SAPCD1-207ENST00000493662 LAMC3Q9Y6N6 1575 aa14.52□□□□□ -0.09
MSH5-SAPCD1-207ENST00000493662 PLEKHG5O94827 1062 aa14.51□□□□□ -0.09
MSH5-SAPCD1-207ENST00000493662 SAFB2Q14151 953 aaKnown RBP eCLIP14.51□□□□□ -0.09
MSH5-SAPCD1-207ENST00000493662 TIAM1Q13009 1591 aa14.51□□□□□ -0.09
MSH5-SAPCD1-207ENST00000493662 PLB1Q6P1J6 1458 aa14.5□□□□□ -0.09
MSH5-SAPCD1-207ENST00000493662 KIF3BO15066 747 aa14.49□□□□□ -0.09
MSH5-SAPCD1-207ENST00000493662 CC2D1BQ5T0F9 858 aaKnown RBP14.49□□□□□ -0.09
MSH5-SAPCD1-207ENST00000493662 AFAP1Q8N556 730 aa14.49□□□□□ -0.09
MSH5-SAPCD1-207ENST00000493662 TNNT2P45379 298 aaPredicted RBP14.48□□□□□ -0.09
MSH5-SAPCD1-207ENST00000493662 EFCAB2Q5VUJ9 269 aa14.46□□□□□ -0.09
MSH5-SAPCD1-207ENST00000493662 IFT140Q96RY7 1462 aa14.46□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 FYCO1Q9BQS8 1478 aa14.46□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 ZBTB47Q9UFB7 747 aaPredicted RBP14.46□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 NPM2Q86SE8 214 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 ESF1Q9H501 851 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 ANKRD30AQ9BXX3 1397 aa14.45□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 GLIPR1L2Q4G1C9 344 aa14.45□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 CCDC136Q96JN2 1154 aa14.42□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.42□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 ARID4BQ4LE39 1312 aaPredicted RBP14.42□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 ST20-MTHFSA0A0A6YYL1 179 aa14.41□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 PTPRKQ15262 1439 aa14.41□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 KIF21AQ7Z4S6 1674 aa14.4□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 SPAG9O60271 1321 aaKnown RBP14.4□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 EPRSP07814 1512 aaKnown RBP14.4□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 NBPF8Q3BBV2 869 aa14.4□□□□□ -0.1
MSH5-SAPCD1-207ENST00000493662 OSCARQ8IYS5 282 aa14.38□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 ANO8Q9HCE9 1232 aaPredicted RBP14.38□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 STK26Q9P289 416 aa14.38□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 TIMELESSQ9UNS1 1208 aa14.37□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 NEUROD2Q15784 382 aa14.36□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 IQGAP2Q13576 1575 aa14.36□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 GRIN2AQ12879 1464 aa14.36□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 NOP58Q9Y2X3 529 aaKnown RBP14.35□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 NAIPQ13075 1403 aa14.35□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 KIAA0586Q9BVV6 1533 aa14.34□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 KIF15Q9NS87 1388 aa14.34□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 EFCAB5A4FU69 1503 aa14.34□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 UACAQ9BZF9 1416 aa14.34□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 TRHP20396 242 aaPredicted RBP14.34□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 WDR97A6NE52 1622 aa14.34□□□□□ -0.11
MSH5-SAPCD1-207ENST00000493662 ROCK2O75116 1388 aaKnown RBP14.33□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 SLC24A1O60721 1099 aa14.32□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 ARHGEF11O15085 1522 aa14.32□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 WASHC2AQ641Q2 1341 aa14.31□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 PPM1GO15355 546 aaPredicted RBP14.31□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 CCDC184Q52MB2 194 aa14.31□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 THOC2Q8NI27 1593 aaKnown RBP14.31□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 ANKRD50Q9ULJ7 1429 aa14.31□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 NBPF1Q3BBV0 1214 aa14.31□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 C11orf95C9JLR9 678 aaPredicted RBP14.3□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 HFM1A2PYH4 1435 aa14.28□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 ERICH6BQ5W0A0 696 aa14.28□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 CUL7Q14999 1698 aa14.28□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 TROQ12816 1431 aaPredicted RBP14.28□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 KNSTRNQ9Y448 316 aa14.28□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 RAPGEF3O95398 923 aa14.27□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 SYNJ2O15056 1496 aa14.27□□□□□ -0.12
MSH5-SAPCD1-207ENST00000493662 WDR43Q15061 677 aaKnown RBP eCLIP14.27□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 B4GALNT3Q6L9W6 998 aa14.27□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 TRAK1Q9UPV9 953 aa14.26□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 WASHC2CQ9Y4E1 1318 aa14.26□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 SOX12O15370 315 aa14.25□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 CANXP27824 592 aaKnown RBP14.25□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 DAPK1P53355 1430 aa14.25□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 NEFMP07197 916 aa14.24□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 NUTM2FA1L443 756 aa14.24□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 EHBP1L1Q8N3D4 1523 aa14.24□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 KIF7Q2M1P5 1343 aa14.24□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 USP47Q96K76 1375 aa14.23□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 ABCC5O15440 1437 aa14.23□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 CCDC144AA2RUR9 1427 aa14.22□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 PRKRIP1Q9H875 184 aaPredicted RBP14.22□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 ARHGAP5Q13017 1502 aa14.22□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 FAM69CQ0P6D2 419 aa14.21□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 TMF1P82094 1093 aa14.21□□□□□ -0.13
MSH5-SAPCD1-207ENST00000493662 TMEM132EQ6IEE7 984 aa14.21□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 HECW1Q76N89 1606 aa14.2□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 C9orf84Q5VXU9 1444 aa14.2□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 NUP153P49790 1475 aaKnown RBP14.2□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 PPP4R2Q9NY27 417 aa14.2□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 POGKQ9P215 609 aa14.2□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 LAS1LQ9Y4W2 734 aaKnown RBP14.2□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 SUPT6HQ7KZ85 1726 aaKnown RBP14.19□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 KANK1Q14678 1352 aa14.19□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 PANK3Q9H999 370 aa14.19□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 SCAPERQ9BY12 1400 aa14.19□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 FANCIQ9NVI1 1328 aa14.19□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 PTPN23Q9H3S7 1636 aa14.18□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 CCER2I3L3R5 266 aa14.18□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 MAPKBP1O60336 1514 aa14.18□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 ZBTB7CA1YPR0 619 aa14.18□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 RSPH4AQ5TD94 716 aa14.18□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 SRPK2P78362 688 aaKnown RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms