RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 CCDC7Q96M83 1385 aa16.69■□□□□ 0.26
SHOX2-205ENST00000490689 GZF1Q9H116 711 aaPredicted RBP16.69■□□□□ 0.26
SHOX2-205ENST00000490689 SENP3Q9H4L4 574 aaPredicted RBP16.69■□□□□ 0.26
SHOX2-205ENST00000490689 GSE1Q14687 1217 aa16.68■□□□□ 0.26
SHOX2-205ENST00000490689 LRRC9Q6ZRR7 1453 aa16.68■□□□□ 0.26
SHOX2-205ENST00000490689 BRPF3Q9ULD4 1205 aa16.67■□□□□ 0.26
SHOX2-205ENST00000490689 IGF1RP08069 1367 aa16.67■□□□□ 0.26
SHOX2-205ENST00000490689 ST20-MTHFSA0A0A6YYL1 179 aa16.67■□□□□ 0.26
SHOX2-205ENST00000490689 TNNT2P45379 298 aaPredicted RBP16.66■□□□□ 0.26
SHOX2-205ENST00000490689 CRBNQ96SW2 442 aa16.65■□□□□ 0.26
SHOX2-205ENST00000490689 USP35Q9P2H5 1018 aa16.65■□□□□ 0.26
SHOX2-205ENST00000490689 TRIM44Q96DX7 344 aaPredicted RBP16.65■□□□□ 0.26
SHOX2-205ENST00000490689 CNTLNQ9NXG0 1405 aa16.64■□□□□ 0.25
SHOX2-205ENST00000490689 TDRD9Q8NDG6 1382 aaKnown RBP16.64■□□□□ 0.25
SHOX2-205ENST00000490689 C11orf95C9JLR9 678 aaPredicted RBP16.63■□□□□ 0.25
SHOX2-205ENST00000490689 EIF4G1Q04637 1599 aaKnown RBP16.63■□□□□ 0.25
SHOX2-205ENST00000490689 KTN1Q86UP2 1357 aaKnown RBP16.62■□□□□ 0.25
SHOX2-205ENST00000490689 RALBP1Q15311 655 aa16.62■□□□□ 0.25
SHOX2-205ENST00000490689 UACAQ9BZF9 1416 aa16.62■□□□□ 0.25
SHOX2-205ENST00000490689 SKAP1Q86WV1 359 aa16.61■□□□□ 0.25
SHOX2-205ENST00000490689 NLRP13Q86W25 1043 aa16.61■□□□□ 0.25
SHOX2-205ENST00000490689 PRXQ9BXM0 1461 aa16.61■□□□□ 0.25
SHOX2-205ENST00000490689 FGD6Q6ZV73 1430 aa16.61■□□□□ 0.25
SHOX2-205ENST00000490689 NBPF8Q3BBV2 869 aa16.6■□□□□ 0.25
SHOX2-205ENST00000490689 CDCA7LQ96GN5 454 aa16.59■□□□□ 0.25
SHOX2-205ENST00000490689 PLEKHD1A6NEE1 506 aa16.59■□□□□ 0.25
SHOX2-205ENST00000490689 NFKBIBQ15653 356 aa16.59■□□□□ 0.25
SHOX2-205ENST00000490689 USP47Q96K76 1375 aa16.57■□□□□ 0.24
SHOX2-205ENST00000490689 CCDC146Q8IYE0 955 aa16.57■□□□□ 0.24
SHOX2-205ENST00000490689 MYBBP1AQ9BQG0 1328 aaKnown RBP16.56■□□□□ 0.24
SHOX2-205ENST00000490689 NCLP19338 710 aaKnown RBP16.56■□□□□ 0.24
SHOX2-205ENST00000490689 CHMP7Q8WUX9 453 aaPredicted RBP16.55■□□□□ 0.24
SHOX2-205ENST00000490689 NUP155O75694 1391 aa16.55■□□□□ 0.24
SHOX2-205ENST00000490689 ROCK2O75116 1388 aaKnown RBP16.55■□□□□ 0.24
SHOX2-205ENST00000490689 TMF1P82094 1093 aa16.54■□□□□ 0.24
SHOX2-205ENST00000490689 ZNF644Q9H582 1327 aaPredicted RBP16.54■□□□□ 0.24
SHOX2-205ENST00000490689 PDE3BQ13370 1112 aa16.53■□□□□ 0.24
SHOX2-205ENST00000490689 FTSJ3Q8IY81 847 aaKnown RBP16.53■□□□□ 0.24
SHOX2-205ENST00000490689 MS4A1P11836 297 aa16.52■□□□□ 0.23
SHOX2-205ENST00000490689 PNNQ9H307 717 aaKnown RBP16.52■□□□□ 0.23
SHOX2-205ENST00000490689 KIF15Q9NS87 1388 aa16.52■□□□□ 0.23
SHOX2-205ENST00000490689 ERICH3Q5RHP9 1530 aa16.51■□□□□ 0.23
SHOX2-205ENST00000490689 SLC24A1O60721 1099 aa16.51■□□□□ 0.23
SHOX2-205ENST00000490689 FAM161AQ3B820 660 aa16.51■□□□□ 0.23
SHOX2-205ENST00000490689 MAPKBP1O60336 1514 aa16.5■□□□□ 0.23
SHOX2-205ENST00000490689 L1TD1Q5T7N2 865 aaKnown RBP16.5■□□□□ 0.23
SHOX2-205ENST00000490689 CLUAP1Q96AJ1 413 aa16.5■□□□□ 0.23
SHOX2-205ENST00000490689 BACH2Q9BYV9 841 aa16.5■□□□□ 0.23
SHOX2-205ENST00000490689 FRAT2O75474 233 aaPredicted RBP16.49■□□□□ 0.23
SHOX2-205ENST00000490689 GOLGA2Q08379 1002 aa16.49■□□□□ 0.23
SHOX2-205ENST00000490689 PANK3Q9H999 370 aa16.49■□□□□ 0.23
SHOX2-205ENST00000490689 PNISRQ8TF01 805 aaKnown RBP16.48■□□□□ 0.23
SHOX2-205ENST00000490689 TPRNQ4KMQ1 711 aa16.47■□□□□ 0.23
SHOX2-205ENST00000490689 CENPQQ7L2Z9 268 aaPredicted RBP16.46■□□□□ 0.23
SHOX2-205ENST00000490689 TIAM1Q13009 1591 aa16.45■□□□□ 0.22
SHOX2-205ENST00000490689 MYOM3Q5VTT5 1437 aa16.45■□□□□ 0.22
SHOX2-205ENST00000490689 CDCA8Q53HL2 280 aa16.44■□□□□ 0.22
SHOX2-205ENST00000490689 HSP90AB1P08238 724 aaKnown RBP16.44■□□□□ 0.22
SHOX2-205ENST00000490689 ARID3AQ99856 593 aa16.44■□□□□ 0.22
SHOX2-205ENST00000490689 BCL2L13Q9BXK5 485 aa16.43■□□□□ 0.22
SHOX2-205ENST00000490689 GOLGA6L3A6NEY3 463 aa16.43■□□□□ 0.22
SHOX2-205ENST00000490689 SMG6Q86US8 1419 aaKnown RBP16.42■□□□□ 0.22
SHOX2-205ENST00000490689 CADPSQ9ULU8 1353 aa16.42■□□□□ 0.22
SHOX2-205ENST00000490689 MFAP1P55081 439 aaKnown RBP16.42■□□□□ 0.22
SHOX2-205ENST00000490689 GOLGA6L22H0YM25 854 aa16.42■□□□□ 0.22
SHOX2-205ENST00000490689 FGD5Q6ZNL6 1462 aa16.41■□□□□ 0.22
SHOX2-205ENST00000490689 HSCBQ8IWL3 235 aa16.41■□□□□ 0.22
SHOX2-205ENST00000490689 COG6Q9Y2V7 657 aa16.41■□□□□ 0.22
SHOX2-205ENST00000490689 NCOA2Q15596 1464 aa16.41■□□□□ 0.22
SHOX2-205ENST00000490689 RSPH6AQ9H0K4 717 aa16.41■□□□□ 0.22
SHOX2-205ENST00000490689 HFM1A2PYH4 1435 aa16.4■□□□□ 0.22
SHOX2-205ENST00000490689 ZBTB7CA1YPR0 619 aa16.4■□□□□ 0.22
SHOX2-205ENST00000490689 CFTRP13569 1480 aa16.4■□□□□ 0.22
SHOX2-205ENST00000490689 RAD54L2Q9Y4B4 1467 aa16.4■□□□□ 0.22
SHOX2-205ENST00000490689 VSIG10Q8N0Z9 540 aa16.4■□□□□ 0.22
SHOX2-205ENST00000490689 RRP7AQ9Y3A4 280 aaKnown RBP16.4■□□□□ 0.22
SHOX2-205ENST00000490689 TOP2BQ02880 1626 aa16.39■□□□□ 0.22
SHOX2-205ENST00000490689 HNRNPMP52272 730 aaKnown RBP eCLIP16.39■□□□□ 0.21
SHOX2-205ENST00000490689 FOXD4L1Q9NU39 408 aa16.39■□□□□ 0.21
SHOX2-205ENST00000490689 APAF1O14727 1248 aa16.38■□□□□ 0.21
SHOX2-205ENST00000490689 NAIPQ13075 1403 aa16.38■□□□□ 0.21
SHOX2-205ENST00000490689 U2SURPO15042 1029 aaKnown RBP16.38■□□□□ 0.21
SHOX2-205ENST00000490689 CASKIN1Q8WXD9 1431 aa16.37■□□□□ 0.21
SHOX2-205ENST00000490689 CFAP53Q96M91 514 aa16.36■□□□□ 0.21
SHOX2-205ENST00000490689 ANKRD30AQ9BXX3 1397 aa16.36■□□□□ 0.21
SHOX2-205ENST00000490689 CUX1P39880 1505 aa16.36■□□□□ 0.21
SHOX2-205ENST00000490689 ADAMTS8Q9UP79 889 aa16.36■□□□□ 0.21
SHOX2-205ENST00000490689 BICRAQ9NZM4 1560 aa16.35■□□□□ 0.21
SHOX2-205ENST00000490689 MYH16Q9H6N6 1097 aa16.34■□□□□ 0.21
SHOX2-205ENST00000490689 PTMAP06454 111 aaKnown RBP16.34■□□□□ 0.21
SHOX2-205ENST00000490689 CENPJQ9HC77 1338 aaPredicted RBP16.33■□□□□ 0.21
SHOX2-205ENST00000490689 HSP90AA2PQ14568 343 aaPredicted RBP16.33■□□□□ 0.21
SHOX2-205ENST00000490689 UNC13AQ9UPW8 1703 aa16.33■□□□□ 0.2
SHOX2-205ENST00000490689 DNTTIP2Q5QJE6 756 aaKnown RBP16.33■□□□□ 0.2
SHOX2-205ENST00000490689 C20orf194Q5TEA3 1177 aa16.33■□□□□ 0.2
SHOX2-205ENST00000490689 MORC1Q86VD1 984 aa16.33■□□□□ 0.2
SHOX2-205ENST00000490689 RWDD1Q9H446 243 aaPredicted RBP16.31■□□□□ 0.2
SHOX2-205ENST00000490689 BRD4O60885 1362 aaPredicted RBP16.31■□□□□ 0.2
SHOX2-205ENST00000490689 PANK1Q8TE04 598 aa16.3■□□□□ 0.2
SHOX2-205ENST00000490689 ITPRIPQ8IWB1 547 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms