RNA–Protein interactions for RNA: ENST00000488920.2

CCHCR1-215, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 715 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-215ENST00000488920 ARHGEF40Q8TER5 1519 aa19.22■□□□□ 0.67
CCHCR1-215ENST00000488920 AFAP1Q8N556 730 aa19.22■□□□□ 0.67
CCHCR1-215ENST00000488920 ZMYM4Q5VZL5 1548 aa19.21■□□□□ 0.67
CCHCR1-215ENST00000488920 MAGI2Q86UL8 1455 aa19.21■□□□□ 0.67
CCHCR1-215ENST00000488920 ZFYVE16Q7Z3T8 1539 aa19.2■□□□□ 0.66
CCHCR1-215ENST00000488920 MYO5CQ9NQX4 1742 aa19.2■□□□□ 0.66
CCHCR1-215ENST00000488920 PTPRMP28827 1452 aa19.19■□□□□ 0.66
CCHCR1-215ENST00000488920 ADAMTSL3P82987 1691 aa19.18■□□□□ 0.66
CCHCR1-215ENST00000488920 LOC105371045A0A1W2PR82 267 aa19.18■□□□□ 0.66
CCHCR1-215ENST00000488920 MLECQ14165 292 aa19.18■□□□□ 0.66
CCHCR1-215ENST00000488920 MYT1LQ9UL68 1186 aa19.18■□□□□ 0.66
CCHCR1-215ENST00000488920 HECW2Q9P2P5 1572 aa19.17■□□□□ 0.66
CCHCR1-215ENST00000488920 BCORL1Q5H9F3 1711 aa19.16■□□□□ 0.66
CCHCR1-215ENST00000488920 CEP162Q5TB80 1403 aa19.16■□□□□ 0.66
CCHCR1-215ENST00000488920 ZNF777Q9ULD5 760 aaPredicted RBP19.15■□□□□ 0.66
CCHCR1-215ENST00000488920 PLPPR3Q6T4P5 718 aa19.14■□□□□ 0.65
CCHCR1-215ENST00000488920 ATP10AO60312 1499 aa19.14■□□□□ 0.65
CCHCR1-215ENST00000488920 ZNF518AQ6AHZ1 1483 aa19.14■□□□□ 0.65
CCHCR1-215ENST00000488920 MADDQ8WXG6 1647 aa19.12■□□□□ 0.65
CCHCR1-215ENST00000488920 TRAPPC8Q9Y2L5 1435 aa19.11■□□□□ 0.65
CCHCR1-215ENST00000488920 MTUS2Q5JR59 1369 aa19.11■□□□□ 0.65
CCHCR1-215ENST00000488920 CDC42BPBQ9Y5S2 1711 aa19.11■□□□□ 0.65
CCHCR1-215ENST00000488920 ARHGEF12Q9NZN5 1544 aa19.1■□□□□ 0.65
CCHCR1-215ENST00000488920 C9orf84Q5VXU9 1444 aa19.09■□□□□ 0.65
CCHCR1-215ENST00000488920 SIGLEC1Q9BZZ2 1709 aa19.09■□□□□ 0.65
CCHCR1-215ENST00000488920 PREX2Q70Z35 1606 aa19.09■□□□□ 0.65
CCHCR1-215ENST00000488920 GPATCH8Q9UKJ3 1502 aaKnown RBP19.09■□□□□ 0.65
CCHCR1-215ENST00000488920 CFDP1Q9UEE9 299 aaPredicted RBP19.08■□□□□ 0.64
CCHCR1-215ENST00000488920 CCNB3Q8WWL7 1395 aa19.07■□□□□ 0.64
CCHCR1-215ENST00000488920 HNRNPMP52272 730 aaKnown RBP eCLIP19.07■□□□□ 0.64
CCHCR1-215ENST00000488920 KDM5CP41229 1560 aa19.06■□□□□ 0.64
CCHCR1-215ENST00000488920 ABCC1P33527 1531 aa19.05■□□□□ 0.64
CCHCR1-215ENST00000488920 MLH3Q9UHC1 1453 aa19.05■□□□□ 0.64
CCHCR1-215ENST00000488920 RIMS1Q86UR5 1692 aaKnown RBP19.05■□□□□ 0.64
CCHCR1-215ENST00000488920 CDC42BPAQ5VT25 1732 aa19.04■□□□□ 0.64
CCHCR1-215ENST00000488920 SPAG9O60271 1321 aaKnown RBP19■□□□□ 0.63
CCHCR1-215ENST00000488920 ZNF644Q9H582 1327 aaPredicted RBP19■□□□□ 0.63
CCHCR1-215ENST00000488920 CEBPAP49715 358 aaPredicted RBP19■□□□□ 0.63
CCHCR1-215ENST00000488920 SAMD9LQ8IVG5 1584 aa19■□□□□ 0.63
CCHCR1-215ENST00000488920 DIP2CQ9Y2E4 1556 aa19■□□□□ 0.63
CCHCR1-215ENST00000488920 ITSN2Q9NZM3 1697 aa18.98■□□□□ 0.63
CCHCR1-215ENST00000488920 SYCP2Q9BX26 1530 aa18.98■□□□□ 0.63
CCHCR1-215ENST00000488920 KIAA1107Q9UPP5 1409 aa18.98■□□□□ 0.63
CCHCR1-215ENST00000488920 HSPA2P54652 639 aa18.97■□□□□ 0.63
CCHCR1-215ENST00000488920 LMTK3Q96Q04 1460 aa18.97■□□□□ 0.63
CCHCR1-215ENST00000488920 ABCA6Q8N139 1617 aa18.96■□□□□ 0.63
CCHCR1-215ENST00000488920 PLEKHH2Q8IVE3 1493 aa18.96■□□□□ 0.63
CCHCR1-215ENST00000488920 EHBP1L1Q8N3D4 1523 aa18.95■□□□□ 0.62
CCHCR1-215ENST00000488920 ILDR1Q86SU0 546 aaPredicted RBP18.94■□□□□ 0.62
CCHCR1-215ENST00000488920 ESF1Q9H501 851 aaKnown RBP18.94■□□□□ 0.62
CCHCR1-215ENST00000488920 REREQ9P2R6 1566 aa18.93■□□□□ 0.62
CCHCR1-215ENST00000488920 FER1L4A9Z1Z3 1794 aa18.93■□□□□ 0.62
CCHCR1-215ENST00000488920 VPS8Q8N3P4 1428 aa18.93■□□□□ 0.62
CCHCR1-215ENST00000488920 KIDINS220Q9ULH0 1771 aa18.93■□□□□ 0.62
CCHCR1-215ENST00000488920 TIAM1Q13009 1591 aa18.92■□□□□ 0.62
CCHCR1-215ENST00000488920 AGLP35573 1532 aa18.91■□□□□ 0.62
CCHCR1-215ENST00000488920 NCOA2Q15596 1464 aa18.9■□□□□ 0.62
CCHCR1-215ENST00000488920 KANK4Q5T7N3 995 aaPredicted RBP18.88■□□□□ 0.61
CCHCR1-215ENST00000488920 MBD5Q9P267 1494 aa18.88■□□□□ 0.61
CCHCR1-215ENST00000488920 ATP7AQ04656 1500 aa18.87■□□□□ 0.61
CCHCR1-215ENST00000488920 LRRC9Q6ZRR7 1453 aa18.85■□□□□ 0.61
CCHCR1-215ENST00000488920 A2MP01023 1474 aa18.84■□□□□ 0.61
CCHCR1-215ENST00000488920 GGT6Q6P531 493 aa18.84■□□□□ 0.61
CCHCR1-215ENST00000488920 SUPT6HQ7KZ85 1726 aaKnown RBP18.83■□□□□ 0.61
CCHCR1-215ENST00000488920 INO80Q9ULG1 1556 aaPredicted RBP18.82■□□□□ 0.6
CCHCR1-215ENST00000488920 RSPH4AQ5TD94 716 aa18.81■□□□□ 0.6
CCHCR1-215ENST00000488920 CNTLNQ9NXG0 1405 aa18.81■□□□□ 0.6
CCHCR1-215ENST00000488920 CAMSAP2Q08AD1 1489 aa18.8■□□□□ 0.6
CCHCR1-215ENST00000488920 RTEL1-TNFRSF6BF6WH68 1400 aa18.8■□□□□ 0.6
CCHCR1-215ENST00000488920 ZMYM3Q14202 1370 aa18.8■□□□□ 0.6
CCHCR1-215ENST00000488920 UHRF1BP1Q6BDS2 1440 aa18.79■□□□□ 0.6
CCHCR1-215ENST00000488920 APLP2Q06481 763 aa18.78■□□□□ 0.6
CCHCR1-215ENST00000488920 MAP3K1Q13233 1512 aa18.78■□□□□ 0.6
CCHCR1-215ENST00000488920 CCDC141Q6ZP82 1450 aa18.77■□□□□ 0.6
CCHCR1-215ENST00000488920 TSPY4P0CV99 314 aa18.77■□□□□ 0.6
CCHCR1-215ENST00000488920 TSPY10P0CW01 314 aa18.77■□□□□ 0.6
CCHCR1-215ENST00000488920 DHX29Q7Z478 1369 aaKnown RBP18.77■□□□□ 0.6
CCHCR1-215ENST00000488920 PLXNC1O60486 1568 aa18.76■□□□□ 0.59
CCHCR1-215ENST00000488920 C3P01024 1663 aa18.76■□□□□ 0.59
CCHCR1-215ENST00000488920 KIF3BO15066 747 aa18.75■□□□□ 0.59
CCHCR1-215ENST00000488920 PREX1Q8TCU6 1659 aa18.75■□□□□ 0.59
CCHCR1-215ENST00000488920 PPP6R1Q9UPN7 881 aa18.74■□□□□ 0.59
CCHCR1-215ENST00000488920 ADGBQ8N7X0 1667 aa18.71■□□□□ 0.59
CCHCR1-215ENST00000488920 FBXO41Q8TF61 875 aa18.71■□□□□ 0.59
CCHCR1-215ENST00000488920 MYOM3Q5VTT5 1437 aa18.71■□□□□ 0.59
CCHCR1-215ENST00000488920 SETD1BQ9UPS6 1966 aaKnown RBP18.71■□□□□ 0.59
CCHCR1-215ENST00000488920 NPATQ14207 1427 aa18.7■□□□□ 0.58
CCHCR1-215ENST00000488920 DMRT2Q9Y5R5 561 aa18.7■□□□□ 0.58
CCHCR1-215ENST00000488920 MIA2Q96PC5 1412 aa18.69■□□□□ 0.58
CCHCR1-215ENST00000488920 ARHGEF5Q12774 1597 aa18.68■□□□□ 0.58
CCHCR1-215ENST00000488920 CLTCQ00610 1675 aaKnown RBP18.67■□□□□ 0.58
CCHCR1-215ENST00000488920 MROH2AA6NES4 1674 aa18.66■□□□□ 0.58
CCHCR1-215ENST00000488920 PTPRKQ15262 1439 aa18.66■□□□□ 0.58
CCHCR1-215ENST00000488920 WASHC2CQ9Y4E1 1318 aa18.66■□□□□ 0.58
CCHCR1-215ENST00000488920 CERKQ8TCT0 537 aa18.65■□□□□ 0.58
CCHCR1-215ENST00000488920 FBXO31Q5XUX0 539 aaPredicted RBP18.64■□□□□ 0.57
CCHCR1-215ENST00000488920 STRCQ7RTU9 1775 aa18.63■□□□□ 0.57
CCHCR1-215ENST00000488920 NCKAP5LQ9HCH0 1330 aa18.61■□□□□ 0.57
CCHCR1-215ENST00000488920 NCOA1Q15788 1441 aa18.6■□□□□ 0.57
CCHCR1-215ENST00000488920 RRP7BPQ9NSQ0 103 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms