RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 PTPRMP28827 1452 aa15.36■□□□□ 0.05
TMEM39A-208ENST00000486159 BCORL1Q5H9F3 1711 aa15.36■□□□□ 0.05
TMEM39A-208ENST00000486159 YEATS2Q9ULM3 1422 aa15.35■□□□□ 0.05
TMEM39A-208ENST00000486159 KIF14Q15058 1648 aa15.35■□□□□ 0.05
TMEM39A-208ENST00000486159 MADDQ8WXG6 1647 aa15.35■□□□□ 0.05
TMEM39A-208ENST00000486159 PLCH2O75038 1416 aa15.33■□□□□ 0.04
TMEM39A-208ENST00000486159 FMN1Q68DA7 1419 aa15.33■□□□□ 0.04
TMEM39A-208ENST00000486159 HECW1Q76N89 1606 aa15.32■□□□□ 0.04
TMEM39A-208ENST00000486159 SCAPERQ9BY12 1400 aa15.32■□□□□ 0.04
TMEM39A-208ENST00000486159 ARHGEF40Q8TER5 1519 aa15.32■□□□□ 0.04
TMEM39A-208ENST00000486159 MLECQ14165 292 aa15.3■□□□□ 0.04
TMEM39A-208ENST00000486159 CFAP74Q9C0B2 1584 aa15.3■□□□□ 0.04
TMEM39A-208ENST00000486159 RIMS1Q86UR5 1692 aaKnown RBP15.29■□□□□ 0.04
TMEM39A-208ENST00000486159 ZMYM4Q5VZL5 1548 aa15.27■□□□□ 0.04
TMEM39A-208ENST00000486159 ZFYVE16Q7Z3T8 1539 aa15.27■□□□□ 0.04
TMEM39A-208ENST00000486159 MYO5CQ9NQX4 1742 aa15.27■□□□□ 0.04
TMEM39A-208ENST00000486159 TROQ12816 1431 aaPredicted RBP15.26■□□□□ 0.03
TMEM39A-208ENST00000486159 PCF11O94913 1555 aaKnown RBP15.26■□□□□ 0.03
TMEM39A-208ENST00000486159 POGZQ7Z3K3 1410 aa15.26■□□□□ 0.03
TMEM39A-208ENST00000486159 EFCAB2Q5VUJ9 269 aa15.25■□□□□ 0.03
TMEM39A-208ENST00000486159 AFAP1Q8N556 730 aa15.25■□□□□ 0.03
TMEM39A-208ENST00000486159 HSPA2P54652 639 aa15.23■□□□□ 0.03
TMEM39A-208ENST00000486159 PPP4R3CPQ6ZMV5 832 aa15.23■□□□□ 0.03
TMEM39A-208ENST00000486159 CDK11AQ9UQ88 783 aaPredicted RBP15.23■□□□□ 0.03
TMEM39A-208ENST00000486159 CDC42BPBQ9Y5S2 1711 aa15.23■□□□□ 0.03
TMEM39A-208ENST00000486159 ARHGAP5Q13017 1502 aa15.22■□□□□ 0.03
TMEM39A-208ENST00000486159 CASKIN1Q8WXD9 1431 aa15.2■□□□□ 0.02
TMEM39A-208ENST00000486159 ARHGEF12Q9NZN5 1544 aa15.2■□□□□ 0.02
TMEM39A-208ENST00000486159 MAGI2Q86UL8 1455 aa15.2■□□□□ 0.02
TMEM39A-208ENST00000486159 SPATA31D1Q6ZQQ2 1576 aa15.19■□□□□ 0.02
TMEM39A-208ENST00000486159 CEBPAP49715 358 aaPredicted RBP15.19■□□□□ 0.02
TMEM39A-208ENST00000486159 ATP10AO60312 1499 aa15.19■□□□□ 0.02
TMEM39A-208ENST00000486159 CLIP1P30622 1438 aa15.17■□□□□ 0.02
TMEM39A-208ENST00000486159 TRAPPC8Q9Y2L5 1435 aa15.17■□□□□ 0.02
TMEM39A-208ENST00000486159 FER1L4A9Z1Z3 1794 aa15.17■□□□□ 0.02
TMEM39A-208ENST00000486159 MYT1LQ9UL68 1186 aa15.16■□□□□ 0.02
TMEM39A-208ENST00000486159 C9orf84Q5VXU9 1444 aa15.16■□□□□ 0.02
TMEM39A-208ENST00000486159 CDC42BPAQ5VT25 1732 aa15.15■□□□□ 0.02
TMEM39A-208ENST00000486159 KDM5CP41229 1560 aa15.15■□□□□ 0.02
TMEM39A-208ENST00000486159 PREX2Q70Z35 1606 aa15.14■□□□□ 0.01
TMEM39A-208ENST00000486159 DIP2CQ9Y2E4 1556 aa15.14■□□□□ 0.01
TMEM39A-208ENST00000486159 CCDC18Q5T9S5 1454 aa15.14■□□□□ 0.01
TMEM39A-208ENST00000486159 ZNF518AQ6AHZ1 1483 aa15.14■□□□□ 0.01
TMEM39A-208ENST00000486159 ABCA6Q8N139 1617 aa15.14■□□□□ 0.01
TMEM39A-208ENST00000486159 ZNF777Q9ULD5 760 aaPredicted RBP15.13■□□□□ 0.01
TMEM39A-208ENST00000486159 SCAF1Q9H7N4 1312 aaKnown RBP15.13■□□□□ 0.01
TMEM39A-208ENST00000486159 ABCC1P33527 1531 aa15.12■□□□□ 0.01
TMEM39A-208ENST00000486159 ITSN2Q9NZM3 1697 aa15.12■□□□□ 0.01
TMEM39A-208ENST00000486159 FYCO1Q9BQS8 1478 aa15.11■□□□□ 0.01
TMEM39A-208ENST00000486159 HNRNPMP52272 730 aaKnown RBP eCLIP15.1■□□□□ 0.018e-7■■■□□ 16.7
TMEM39A-208ENST00000486159 SAMD9LQ8IVG5 1584 aa15.09■□□□□ 0.01
TMEM39A-208ENST00000486159 KIDINS220Q9ULH0 1771 aa15.08■□□□□ 0.01
TMEM39A-208ENST00000486159 GPATCH8Q9UKJ3 1502 aaKnown RBP15.08■□□□□ 0.01
TMEM39A-208ENST00000486159 MLH3Q9UHC1 1453 aa15.08■□□□□ 0
TMEM39A-208ENST00000486159 SYCP2Q9BX26 1530 aa15.05■□□□□ -0
TMEM39A-208ENST00000486159 ZNF644Q9H582 1327 aaPredicted RBP15.04■□□□□ -0
TMEM39A-208ENST00000486159 REREQ9P2R6 1566 aa15.03■□□□□ -0
TMEM39A-208ENST00000486159 C3P01024 1663 aa15.03■□□□□ -0
TMEM39A-208ENST00000486159 LOC105371045A0A1W2PR82 267 aa15.02■□□□□ -0
TMEM39A-208ENST00000486159 PREX1Q8TCU6 1659 aa15.01□□□□□ -0.01
TMEM39A-208ENST00000486159 CERKQ8TCT0 537 aa15.01□□□□□ -0.01
TMEM39A-208ENST00000486159 CFDP1Q9UEE9 299 aaPredicted RBP15.01□□□□□ -0.01
TMEM39A-208ENST00000486159 MTUS2Q5JR59 1369 aa15□□□□□ -0.01
TMEM39A-208ENST00000486159 AGLP35573 1532 aa15□□□□□ -0.01
TMEM39A-208ENST00000486159 STRCQ7RTU9 1775 aa15□□□□□ -0.01
TMEM39A-208ENST00000486159 SUPT6HQ7KZ85 1726 aaKnown RBP15□□□□□ -0.01
TMEM39A-208ENST00000486159 CEP162Q5TB80 1403 aa15□□□□□ -0.01
TMEM39A-208ENST00000486159 CCNB3Q8WWL7 1395 aa14.99□□□□□ -0.01
TMEM39A-208ENST00000486159 SPAG9O60271 1321 aaKnown RBP14.99□□□□□ -0.01
TMEM39A-208ENST00000486159 TIAM1Q13009 1591 aa14.98□□□□□ -0.01
TMEM39A-208ENST00000486159 UHRF1BP1Q6BDS2 1440 aa14.95□□□□□ -0.02
TMEM39A-208ENST00000486159 ESF1Q9H501 851 aaKnown RBP14.95□□□□□ -0.02
TMEM39A-208ENST00000486159 ATP7AQ04656 1500 aa14.95□□□□□ -0.02
TMEM39A-208ENST00000486159 INO80Q9ULG1 1556 aaPredicted RBP14.94□□□□□ -0.02
TMEM39A-208ENST00000486159 KIAA1107Q9UPP5 1409 aa14.94□□□□□ -0.02
TMEM39A-208ENST00000486159 SETD1BQ9UPS6 1966 aaKnown RBP14.94□□□□□ -0.02
TMEM39A-208ENST00000486159 MBD5Q9P267 1494 aa14.93□□□□□ -0.02
TMEM39A-208ENST00000486159 EHBP1L1Q8N3D4 1523 aa14.92□□□□□ -0.02
TMEM39A-208ENST00000486159 GGT6Q6P531 493 aa14.92□□□□□ -0.02
TMEM39A-208ENST00000486159 ZMYM3Q14202 1370 aa14.92□□□□□ -0.02
TMEM39A-208ENST00000486159 A2MP01023 1474 aa14.92□□□□□ -0.02
TMEM39A-208ENST00000486159 CLTCQ00610 1675 aaKnown RBP14.92□□□□□ -0.02
TMEM39A-208ENST00000486159 PLXNC1O60486 1568 aa14.9□□□□□ -0.02
TMEM39A-208ENST00000486159 KCNA4P22459 653 aa14.9□□□□□ -0.02
TMEM39A-208ENST00000486159 PLEKHH2Q8IVE3 1493 aa14.89□□□□□ -0.03
TMEM39A-208ENST00000486159 NCBP3Q53F19 620 aaKnown RBP14.89□□□□□ -0.03
TMEM39A-208ENST00000486159 NCOA2Q15596 1464 aa14.89□□□□□ -0.03
TMEM39A-208ENST00000486159 CNTLNQ9NXG0 1405 aa14.88□□□□□ -0.03
TMEM39A-208ENST00000486159 KANK4Q5T7N3 995 aaPredicted RBP14.87□□□□□ -0.03
TMEM39A-208ENST00000486159 NCKAP5LQ9HCH0 1330 aa14.87□□□□□ -0.03
TMEM39A-208ENST00000486159 MROH2AA6NES4 1674 aa14.87□□□□□ -0.03
TMEM39A-208ENST00000486159 MAPK8IP2Q13387 824 aaPredicted RBP14.86□□□□□ -0.03
TMEM39A-208ENST00000486159 ADGBQ8N7X0 1667 aa14.85□□□□□ -0.03
TMEM39A-208ENST00000486159 CAMSAP1Q5T5Y3 1602 aa14.84□□□□□ -0.03
TMEM39A-208ENST00000486159 PTPRKQ15262 1439 aa14.84□□□□□ -0.03
TMEM39A-208ENST00000486159 CAMSAP2Q08AD1 1489 aa14.84□□□□□ -0.03
TMEM39A-208ENST00000486159 NCOA1Q15788 1441 aa14.83□□□□□ -0.03
TMEM39A-208ENST00000486159 DMRT2Q9Y5R5 561 aa14.83□□□□□ -0.04
TMEM39A-208ENST00000486159 DHX29Q7Z478 1369 aaKnown RBP14.83□□□□□ -0.04
TMEM39A-208ENST00000486159 PTPRTO14522 1441 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms