RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CFAP43Q8NDM7 1665 aa12.64□□□□□ -0.39
USP40-216ENST00000485943 CDK13Q14004 1512 aaKnown RBP12.64□□□□□ -0.39
USP40-216ENST00000485943 KDM6BO15054 1643 aa12.64□□□□□ -0.39
USP40-216ENST00000485943 PCF11O94913 1555 aaKnown RBP12.64□□□□□ -0.39
USP40-216ENST00000485943 FYCO1Q9BQS8 1478 aa12.63□□□□□ -0.39
USP40-216ENST00000485943 CASKIN1Q8WXD9 1431 aa12.62□□□□□ -0.39
USP40-216ENST00000485943 RNF39Q9H2S5 420 aa12.62□□□□□ -0.39
USP40-216ENST00000485943 MTUS2Q5JR59 1369 aa12.6□□□□□ -0.39
USP40-216ENST00000485943 KIF14Q15058 1648 aa12.6□□□□□ -0.39
USP40-216ENST00000485943 MAP3K4Q9Y6R4 1608 aa12.6□□□□□ -0.39
USP40-216ENST00000485943 MYT1LQ9UL68 1186 aa12.6□□□□□ -0.39
USP40-216ENST00000485943 CFAP74Q9C0B2 1584 aa12.56□□□□□ -0.4
USP40-216ENST00000485943 ABCA9Q8IUA7 1624 aa12.56□□□□□ -0.4
USP40-216ENST00000485943 TROQ12816 1431 aaPredicted RBP12.55□□□□□ -0.4
USP40-216ENST00000485943 MYO5CQ9NQX4 1742 aa12.54□□□□□ -0.4
USP40-216ENST00000485943 MAGI3Q5TCQ9 1506 aa12.54□□□□□ -0.4
USP40-216ENST00000485943 SPINK5Q9NQ38 1064 aaPredicted RBP12.54□□□□□ -0.4
USP40-216ENST00000485943 VPS8Q8N3P4 1428 aa12.54□□□□□ -0.4
USP40-216ENST00000485943 PHLDB1Q86UU1 1377 aa12.53□□□□□ -0.4
USP40-216ENST00000485943 ARHGAP5Q13017 1502 aa12.52□□□□□ -0.4
USP40-216ENST00000485943 LRRIQ1Q96JM4 1722 aa12.52□□□□□ -0.41
USP40-216ENST00000485943 EFCAB2Q5VUJ9 269 aa12.52□□□□□ -0.41
USP40-216ENST00000485943 ZNF777Q9ULD5 760 aaPredicted RBP12.52□□□□□ -0.41
USP40-216ENST00000485943 PPRC1Q5VV67 1664 aaKnown RBP12.51□□□□□ -0.41
USP40-216ENST00000485943 FANCAO15360 1455 aa12.51□□□□□ -0.41
USP40-216ENST00000485943 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.51□□□□□ -0.41
USP40-216ENST00000485943 CCNB3Q8WWL7 1395 aa12.5□□□□□ -0.41
USP40-216ENST00000485943 TTC37Q6PGP7 1564 aa12.5□□□□□ -0.41
USP40-216ENST00000485943 EHBP1L1Q8N3D4 1523 aa12.49□□□□□ -0.41
USP40-216ENST00000485943 NEO1Q92859 1461 aa12.49□□□□□ -0.41
USP40-216ENST00000485943 SUPT6HQ7KZ85 1726 aaKnown RBP12.47□□□□□ -0.41
USP40-216ENST00000485943 AKNAQ7Z591 1439 aa12.46□□□□□ -0.41
USP40-216ENST00000485943 ARID4BQ4LE39 1312 aaPredicted RBP12.46□□□□□ -0.41
USP40-216ENST00000485943 CFDP1Q9UEE9 299 aaPredicted RBP12.46□□□□□ -0.41
USP40-216ENST00000485943 DENND4BO75064 1496 aaPredicted RBP12.46□□□□□ -0.42
USP40-216ENST00000485943 ADGRL1O94910 1474 aa12.46□□□□□ -0.42
USP40-216ENST00000485943 PLCH2O75038 1416 aa12.45□□□□□ -0.42
USP40-216ENST00000485943 C1QBPQ07021 282 aaKnown RBP12.45□□□□□ -0.42
USP40-216ENST00000485943 MKRN4PQ13434 485 aaPredicted RBP12.45□□□□□ -0.42
USP40-216ENST00000485943 ITSN2Q9NZM3 1697 aa12.45□□□□□ -0.42
USP40-216ENST00000485943 TIAM1Q13009 1591 aa12.44□□□□□ -0.42
USP40-216ENST00000485943 RAPGEF3O95398 923 aa12.43□□□□□ -0.42
USP40-216ENST00000485943 RTN4Q9NQC3 1192 aaKnown RBP12.43□□□□□ -0.42
USP40-216ENST00000485943 PREX2Q70Z35 1606 aa12.42□□□□□ -0.42
USP40-216ENST00000485943 SCAPERQ9BY12 1400 aa12.42□□□□□ -0.42
USP40-216ENST00000485943 ARAP3Q8WWN8 1544 aa12.42□□□□□ -0.42
USP40-216ENST00000485943 CDC42BPAQ5VT25 1732 aa12.4□□□□□ -0.42
USP40-216ENST00000485943 CAPN15O75808 1086 aa12.39□□□□□ -0.43
USP40-216ENST00000485943 CDC42BPBQ9Y5S2 1711 aa12.39□□□□□ -0.43
USP40-216ENST00000485943 PLEKHH2Q8IVE3 1493 aa12.39□□□□□ -0.43
USP40-216ENST00000485943 LRRC9Q6ZRR7 1453 aa12.38□□□□□ -0.43
USP40-216ENST00000485943 POLA2Q14181 598 aa12.37□□□□□ -0.43
USP40-216ENST00000485943 AMER1Q5JTC6 1135 aaPredicted RBP12.37□□□□□ -0.43
USP40-216ENST00000485943 ESF1Q9H501 851 aaKnown RBP12.37□□□□□ -0.43
USP40-216ENST00000485943 NCOA2Q15596 1464 aa12.37□□□□□ -0.43
USP40-216ENST00000485943 ZNF518AQ6AHZ1 1483 aa12.37□□□□□ -0.43
USP40-216ENST00000485943 MAP3K1Q13233 1512 aa12.37□□□□□ -0.43
USP40-216ENST00000485943 COL17A1Q9UMD9 1497 aaPredicted RBP12.35□□□□□ -0.43
USP40-216ENST00000485943 ZFYVE16Q7Z3T8 1539 aa12.35□□□□□ -0.43
USP40-216ENST00000485943 POGZQ7Z3K3 1410 aa12.35□□□□□ -0.43
USP40-216ENST00000485943 RICTORQ6R327 1708 aa12.34□□□□□ -0.43
USP40-216ENST00000485943 GPATCH8Q9UKJ3 1502 aaKnown RBP12.34□□□□□ -0.43
USP40-216ENST00000485943 TSPY4P0CV99 314 aa12.34□□□□□ -0.43
USP40-216ENST00000485943 TSPY10P0CW01 314 aa12.34□□□□□ -0.43
USP40-216ENST00000485943 HNRNPMP52272 730 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP40-216ENST00000485943 SPAG9O60271 1321 aaKnown RBP12.34□□□□□ -0.43
USP40-216ENST00000485943 AFAP1Q8N556 730 aa12.33□□□□□ -0.44
USP40-216ENST00000485943 SYCP2Q9BX26 1530 aa12.32□□□□□ -0.44
USP40-216ENST00000485943 MLECQ14165 292 aa12.32□□□□□ -0.44
USP40-216ENST00000485943 KANK4Q5T7N3 995 aaPredicted RBP12.32□□□□□ -0.44
USP40-216ENST00000485943 MAGI2Q86UL8 1455 aa12.32□□□□□ -0.44
USP40-216ENST00000485943 ABCC1P33527 1531 aa12.32□□□□□ -0.44
USP40-216ENST00000485943 SPDYE4A6NLX3 237 aa12.31□□□□□ -0.44
USP40-216ENST00000485943 HECW2Q9P2P5 1572 aa12.3□□□□□ -0.44
USP40-216ENST00000485943 FAM50AQ14320 339 aaKnown RBP12.3□□□□□ -0.44
USP40-216ENST00000485943 RSPH4AQ5TD94 716 aa12.3□□□□□ -0.44
USP40-216ENST00000485943 ARHGEF40Q8TER5 1519 aa12.3□□□□□ -0.44
USP40-216ENST00000485943 SAMD9LQ8IVG5 1584 aa12.3□□□□□ -0.44
USP40-216ENST00000485943 ZMYM4Q5VZL5 1548 aa12.29□□□□□ -0.44
USP40-216ENST00000485943 PPARGC1BQ86YN6 1023 aaKnown RBP12.29□□□□□ -0.44
USP40-216ENST00000485943 MYOM3Q5VTT5 1437 aa12.28□□□□□ -0.44
USP40-216ENST00000485943 CAMSAP2Q08AD1 1489 aa12.28□□□□□ -0.44
USP40-216ENST00000485943 FRMPD1Q5SYB0 1578 aa12.28□□□□□ -0.44
USP40-216ENST00000485943 C9orf84Q5VXU9 1444 aa12.28□□□□□ -0.44
USP40-216ENST00000485943 KIAA1107Q9UPP5 1409 aa12.28□□□□□ -0.44
USP40-216ENST00000485943 ATP10AO60312 1499 aa12.27□□□□□ -0.45
USP40-216ENST00000485943 CACNB1Q02641 598 aaPredicted RBP12.26□□□□□ -0.45
USP40-216ENST00000485943 ZNF644Q9H582 1327 aaPredicted RBP12.26□□□□□ -0.45
USP40-216ENST00000485943 MIA2Q96PC5 1412 aa12.26□□□□□ -0.45
USP40-216ENST00000485943 TRAPPC8Q9Y2L5 1435 aa12.26□□□□□ -0.45
USP40-216ENST00000485943 CCDC141Q6ZP82 1450 aa12.26□□□□□ -0.45
USP40-216ENST00000485943 PROM2Q8N271 834 aa12.25□□□□□ -0.45
USP40-216ENST00000485943 YEATS2Q9ULM3 1422 aa12.25□□□□□ -0.45
USP40-216ENST00000485943 ABCB7O75027 752 aa12.24□□□□□ -0.45
USP40-216ENST00000485943 PTPN23Q9H3S7 1636 aa12.23□□□□□ -0.45
USP40-216ENST00000485943 KDM5CP41229 1560 aa12.23□□□□□ -0.45
USP40-216ENST00000485943 ATP7AQ04656 1500 aa12.23□□□□□ -0.45
USP40-216ENST00000485943 MLH3Q9UHC1 1453 aa12.23□□□□□ -0.45
USP40-216ENST00000485943 ARHGEF12Q9NZN5 1544 aa12.21□□□□□ -0.45
USP40-216ENST00000485943 ITGAEP38570 1179 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms