RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 CDK13Q14004 1512 aaKnown RBP12.9□□□□□ -0.34
SF3A1-208ENST00000485618 RICTORQ6R327 1708 aa12.9□□□□□ -0.34
SF3A1-208ENST00000485618 FANCAO15360 1455 aa12.9□□□□□ -0.34
SF3A1-208ENST00000485618 TTC37Q6PGP7 1564 aa12.9□□□□□ -0.35
SF3A1-208ENST00000485618 RIMS1Q86UR5 1692 aaKnown RBP12.89□□□□□ -0.35
SF3A1-208ENST00000485618 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.88□□□□□ -0.35
SF3A1-208ENST00000485618 AKNAQ7Z591 1439 aa12.88□□□□□ -0.35
SF3A1-208ENST00000485618 ZMYM4Q5VZL5 1548 aa12.87□□□□□ -0.35
SF3A1-208ENST00000485618 SOCS7O14512 581 aa12.86□□□□□ -0.35
SF3A1-208ENST00000485618 MAP3K1Q13233 1512 aa12.86□□□□□ -0.35
SF3A1-208ENST00000485618 ZFYVE16Q7Z3T8 1539 aa12.86□□□□□ -0.35
SF3A1-208ENST00000485618 ILDR2Q71H61 639 aa12.85□□□□□ -0.35
SF3A1-208ENST00000485618 EFCAB2Q5VUJ9 269 aa12.84□□□□□ -0.35
SF3A1-208ENST00000485618 KIF14Q15058 1648 aa12.84□□□□□ -0.35
SF3A1-208ENST00000485618 POGZQ7Z3K3 1410 aa12.83□□□□□ -0.36
SF3A1-208ENST00000485618 YEATS2Q9ULM3 1422 aa12.82□□□□□ -0.36
SF3A1-208ENST00000485618 PLPPR3Q6T4P5 718 aa12.81□□□□□ -0.36
SF3A1-208ENST00000485618 SIGLEC1Q9BZZ2 1709 aa12.81□□□□□ -0.36
SF3A1-208ENST00000485618 CCNB3Q8WWL7 1395 aa12.81□□□□□ -0.36
SF3A1-208ENST00000485618 MAGI2Q86UL8 1455 aa12.8□□□□□ -0.36
SF3A1-208ENST00000485618 TIAM1Q13009 1591 aa12.8□□□□□ -0.36
SF3A1-208ENST00000485618 PLCH2O75038 1416 aa12.79□□□□□ -0.36
SF3A1-208ENST00000485618 FER1L4A9Z1Z3 1794 aa12.79□□□□□ -0.36
SF3A1-208ENST00000485618 EHBP1L1Q8N3D4 1523 aa12.79□□□□□ -0.36
SF3A1-208ENST00000485618 CFDP1Q9UEE9 299 aaPredicted RBP12.79□□□□□ -0.36
SF3A1-208ENST00000485618 LRRIQ1Q96JM4 1722 aa12.79□□□□□ -0.36
SF3A1-208ENST00000485618 LRRC9Q6ZRR7 1453 aa12.78□□□□□ -0.36
SF3A1-208ENST00000485618 MYO5CQ9NQX4 1742 aa12.78□□□□□ -0.36
SF3A1-208ENST00000485618 DISP3Q9P2K9 1392 aa12.78□□□□□ -0.36
SF3A1-208ENST00000485618 SCAPERQ9BY12 1400 aa12.78□□□□□ -0.36
SF3A1-208ENST00000485618 HSPA2P54652 639 aa12.77□□□□□ -0.37
SF3A1-208ENST00000485618 MLECQ14165 292 aa12.76□□□□□ -0.37
SF3A1-208ENST00000485618 KANK4Q5T7N3 995 aaPredicted RBP12.75□□□□□ -0.37
SF3A1-208ENST00000485618 C9orf84Q5VXU9 1444 aa12.75□□□□□ -0.37
SF3A1-208ENST00000485618 SUPT6HQ7KZ85 1726 aaKnown RBP12.74□□□□□ -0.37
SF3A1-208ENST00000485618 ARHGAP5Q13017 1502 aa12.74□□□□□ -0.37
SF3A1-208ENST00000485618 ZNF777Q9ULD5 760 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-208ENST00000485618 ARHGEF12Q9NZN5 1544 aa12.73□□□□□ -0.37
SF3A1-208ENST00000485618 ATP10AO60312 1499 aa12.73□□□□□ -0.37
SF3A1-208ENST00000485618 NCOA2Q15596 1464 aa12.72□□□□□ -0.37
SF3A1-208ENST00000485618 ZNF518AQ6AHZ1 1483 aa12.72□□□□□ -0.37
SF3A1-208ENST00000485618 RSPH4AQ5TD94 716 aa12.72□□□□□ -0.37
SF3A1-208ENST00000485618 PLEKHH2Q8IVE3 1493 aa12.72□□□□□ -0.37
SF3A1-208ENST00000485618 GPATCH8Q9UKJ3 1502 aaKnown RBP12.71□□□□□ -0.38
SF3A1-208ENST00000485618 PREX1Q8TCU6 1659 aa12.7□□□□□ -0.38
SF3A1-208ENST00000485618 KDM5CP41229 1560 aa12.7□□□□□ -0.38
SF3A1-208ENST00000485618 MYT1LQ9UL68 1186 aa12.69□□□□□ -0.38
SF3A1-208ENST00000485618 MIA2Q96PC5 1412 aa12.68□□□□□ -0.38
SF3A1-208ENST00000485618 DIP2CQ9Y2E4 1556 aa12.68□□□□□ -0.38
SF3A1-208ENST00000485618 ITSN2Q9NZM3 1697 aa12.67□□□□□ -0.38
SF3A1-208ENST00000485618 KIAA1107Q9UPP5 1409 aa12.67□□□□□ -0.38
SF3A1-208ENST00000485618 PREX2Q70Z35 1606 aa12.66□□□□□ -0.38
SF3A1-208ENST00000485618 MYOM3Q5VTT5 1437 aa12.66□□□□□ -0.38
SF3A1-208ENST00000485618 TSPY4P0CV99 314 aa12.66□□□□□ -0.38
SF3A1-208ENST00000485618 TSPY10P0CW01 314 aa12.66□□□□□ -0.38
SF3A1-208ENST00000485618 ABCA6Q8N139 1617 aa12.66□□□□□ -0.38
SF3A1-208ENST00000485618 REREQ9P2R6 1566 aa12.65□□□□□ -0.38
SF3A1-208ENST00000485618 CEBPAP49715 358 aaPredicted RBP12.65□□□□□ -0.38
SF3A1-208ENST00000485618 ABCC1P33527 1531 aa12.65□□□□□ -0.38
SF3A1-208ENST00000485618 CDC42BPAQ5VT25 1732 aa12.65□□□□□ -0.38
SF3A1-208ENST00000485618 SPATA31D1Q6ZQQ2 1576 aa12.64□□□□□ -0.39
SF3A1-208ENST00000485618 UHRF1BP1Q6BDS2 1440 aa12.64□□□□□ -0.39
SF3A1-208ENST00000485618 HNRNPMP52272 730 aaKnown RBP eCLIP12.64□□□□□ -0.39
SF3A1-208ENST00000485618 AFAP1Q8N556 730 aa12.64□□□□□ -0.39
SF3A1-208ENST00000485618 CERKQ8TCT0 537 aa12.64□□□□□ -0.39
SF3A1-208ENST00000485618 CDC42BPBQ9Y5S2 1711 aa12.64□□□□□ -0.39
SF3A1-208ENST00000485618 SPAG9O60271 1321 aaKnown RBP12.62□□□□□ -0.39
SF3A1-208ENST00000485618 MLH3Q9UHC1 1453 aa12.62□□□□□ -0.39
SF3A1-208ENST00000485618 PPARGC1BQ86YN6 1023 aaKnown RBP12.62□□□□□ -0.39
SF3A1-208ENST00000485618 TRAPPC8Q9Y2L5 1435 aa12.61□□□□□ -0.39
SF3A1-208ENST00000485618 ZNF644Q9H582 1327 aaPredicted RBP12.61□□□□□ -0.39
SF3A1-208ENST00000485618 C3P01024 1663 aa12.61□□□□□ -0.39
SF3A1-208ENST00000485618 FAM50AQ14320 339 aaKnown RBP12.6□□□□□ -0.39
SF3A1-208ENST00000485618 AGLP35573 1532 aa12.6□□□□□ -0.39
SF3A1-208ENST00000485618 STRCQ7RTU9 1775 aa12.59□□□□□ -0.39
SF3A1-208ENST00000485618 FGD6Q6ZV73 1430 aa12.59□□□□□ -0.39
SF3A1-208ENST00000485618 ESF1Q9H501 851 aaKnown RBP12.58□□□□□ -0.4
SF3A1-208ENST00000485618 KIDINS220Q9ULH0 1771 aa12.58□□□□□ -0.4
SF3A1-208ENST00000485618 CAMSAP2Q08AD1 1489 aa12.58□□□□□ -0.4
SF3A1-208ENST00000485618 SAMD9LQ8IVG5 1584 aa12.57□□□□□ -0.4
SF3A1-208ENST00000485618 DMRT2Q9Y5R5 561 aa12.57□□□□□ -0.4
SF3A1-208ENST00000485618 CCDC141Q6ZP82 1450 aa12.56□□□□□ -0.4
SF3A1-208ENST00000485618 SYCP2Q9BX26 1530 aa12.56□□□□□ -0.4
SF3A1-208ENST00000485618 CNTLNQ9NXG0 1405 aa12.55□□□□□ -0.4
SF3A1-208ENST00000485618 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.55□□□□□ -0.4
SF3A1-208ENST00000485618 RTEL1-TNFRSF6BF6WH68 1400 aa12.54□□□□□ -0.4
SF3A1-208ENST00000485618 MBD5Q9P267 1494 aa12.54□□□□□ -0.4
SF3A1-208ENST00000485618 PTPN23Q9H3S7 1636 aa12.54□□□□□ -0.4
SF3A1-208ENST00000485618 PTPRTO14522 1441 aa12.53□□□□□ -0.4
SF3A1-208ENST00000485618 TCOF1Q13428 1488 aaKnown RBP12.53□□□□□ -0.4
SF3A1-208ENST00000485618 SETD1BQ9UPS6 1966 aaKnown RBP12.52□□□□□ -0.4
SF3A1-208ENST00000485618 ARHGEF5Q12774 1597 aa12.52□□□□□ -0.4
SF3A1-208ENST00000485618 MROH2AA6NES4 1674 aa12.52□□□□□ -0.4
SF3A1-208ENST00000485618 NCOA1Q15788 1441 aa12.51□□□□□ -0.41
SF3A1-208ENST00000485618 ATP7AQ04656 1500 aa12.51□□□□□ -0.41
SF3A1-208ENST00000485618 ANKRD30AQ9BXX3 1397 aa12.5□□□□□ -0.41
SF3A1-208ENST00000485618 NPATQ14207 1427 aa12.5□□□□□ -0.41
SF3A1-208ENST00000485618 INO80Q9ULG1 1556 aaPredicted RBP12.5□□□□□ -0.41
SF3A1-208ENST00000485618 PLXNC1O60486 1568 aa12.49□□□□□ -0.41
SF3A1-208ENST00000485618 CLTCQ00610 1675 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms