RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 AMER1Q5JTC6 1135 aaPredicted RBP10.42□□□□□ -0.74
PTCD3-215ENST00000484203 CUL7Q14999 1698 aa10.39□□□□□ -0.75
PTCD3-215ENST00000484203 SHROOM2Q13796 1616 aa10.39□□□□□ -0.75
PTCD3-215ENST00000484203 CARMIL2Q6F5E8 1435 aa10.39□□□□□ -0.75
PTCD3-215ENST00000484203 DCBLD2Q96PD2 775 aa10.38□□□□□ -0.75
PTCD3-215ENST00000484203 RTN4Q9NQC3 1192 aaKnown RBP10.38□□□□□ -0.75
PTCD3-215ENST00000484203 RAPGEF2Q9Y4G8 1499 aa10.36□□□□□ -0.75
PTCD3-215ENST00000484203 FAM9AQ8IZU1 332 aaPredicted RBP10.35□□□□□ -0.75
PTCD3-215ENST00000484203 PTPRGP23470 1445 aa10.34□□□□□ -0.75
PTCD3-215ENST00000484203 RUSC2Q8N2Y8 1516 aa10.34□□□□□ -0.75
PTCD3-215ENST00000484203 PKD2Q13563 968 aa10.34□□□□□ -0.75
PTCD3-215ENST00000484203 ERCC6L2Q5T890 1561 aa10.34□□□□□ -0.75
PTCD3-215ENST00000484203 PHF12Q96QT6 1004 aa10.33□□□□□ -0.76
PTCD3-215ENST00000484203 CCDC61Q9Y6R9 512 aa10.33□□□□□ -0.76
PTCD3-215ENST00000484203 TNIKQ9UKE5 1360 aa10.33□□□□□ -0.76
PTCD3-215ENST00000484203 POTEIP0CG38 1075 aa10.32□□□□□ -0.76
PTCD3-215ENST00000484203 GALR2O43603 387 aaPredicted RBP10.31□□□□□ -0.76
PTCD3-215ENST00000484203 ECM2O94769 699 aaPredicted RBP10.31□□□□□ -0.76
PTCD3-215ENST00000484203 PYGBP11216 843 aa10.31□□□□□ -0.76
PTCD3-215ENST00000484203 EEA1Q15075 1411 aa10.29□□□□□ -0.76
PTCD3-215ENST00000484203 FAM69CQ0P6D2 419 aa10.28□□□□□ -0.76
PTCD3-215ENST00000484203 LHX8Q68G74 356 aa10.28□□□□□ -0.76
PTCD3-215ENST00000484203 IQGAP2Q13576 1575 aa10.27□□□□□ -0.76
PTCD3-215ENST00000484203 GOLGA3Q08378 1498 aa10.26□□□□□ -0.77
PTCD3-215ENST00000484203 PRXQ9BXM0 1461 aa10.26□□□□□ -0.77
PTCD3-215ENST00000484203 MAPKBP1O60336 1514 aa10.26□□□□□ -0.77
PTCD3-215ENST00000484203 UACAQ9BZF9 1416 aa10.25□□□□□ -0.77
PTCD3-215ENST00000484203 ABCC10Q5T3U5 1492 aa10.25□□□□□ -0.77
PTCD3-215ENST00000484203 UGGT2Q9NYU1 1516 aa10.25□□□□□ -0.77
PTCD3-215ENST00000484203 UHRF1BP1LA0JNW5 1464 aa10.24□□□□□ -0.77
PTCD3-215ENST00000484203 CHRM1P11229 460 aaPredicted RBP10.24□□□□□ -0.77
PTCD3-215ENST00000484203 KIF12Q96FN5 646 aa10.24□□□□□ -0.77
PTCD3-215ENST00000484203 ABCC2Q92887 1545 aa10.23□□□□□ -0.77
PTCD3-215ENST00000484203 TTBK1Q5TCY1 1321 aaPredicted RBP10.23□□□□□ -0.77
PTCD3-215ENST00000484203 PLB1Q6P1J6 1458 aa10.23□□□□□ -0.77
PTCD3-215ENST00000484203 MAP3K13O43283 966 aa10.22□□□□□ -0.77
PTCD3-215ENST00000484203 DISP1Q96F81 1524 aa10.22□□□□□ -0.77
PTCD3-215ENST00000484203 MS4A3Q96HJ5 214 aa10.21□□□□□ -0.77
PTCD3-215ENST00000484203 PCDHB13Q9Y5F0 798 aa10.2□□□□□ -0.78
PTCD3-215ENST00000484203 RGL2O15211 777 aa10.19□□□□□ -0.78
PTCD3-215ENST00000484203 ADCY10Q96PN6 1610 aa10.18□□□□□ -0.78
PTCD3-215ENST00000484203 ASXL2Q76L83 1435 aa10.17□□□□□ -0.78
PTCD3-215ENST00000484203 SGIP1Q9BQI5 828 aa10.17□□□□□ -0.78
PTCD3-215ENST00000484203 KDM5BQ9UGL1 1544 aa10.17□□□□□ -0.78
PTCD3-215ENST00000484203 ZNF467Q7Z7K2 595 aaPredicted RBP10.16□□□□□ -0.78
PTCD3-215ENST00000484203 RNF25Q96BH1 459 aaPredicted RBP10.16□□□□□ -0.78
PTCD3-215ENST00000484203 PCDHB8Q9UN66 801 aa10.16□□□□□ -0.78
PTCD3-215ENST00000484203 KIAA0556O60303 1618 aa10.15□□□□□ -0.78
PTCD3-215ENST00000484203 IFNL1Q8IU54 200 aa10.15□□□□□ -0.78
PTCD3-215ENST00000484203 RIOK3O14730 519 aaKnown RBP10.14□□□□□ -0.79
PTCD3-215ENST00000484203 ASTLQ6HA08 431 aaPredicted RBP10.13□□□□□ -0.79
PTCD3-215ENST00000484203 DIP2BQ9P265 1576 aa10.13□□□□□ -0.79
PTCD3-215ENST00000484203 GLI2P10070 1586 aa10.11□□□□□ -0.79
PTCD3-215ENST00000484203 TEX14Q8IWB6 1497 aa10.1□□□□□ -0.79
PTCD3-215ENST00000484203 WDR7Q9Y4E6 1490 aa10.1□□□□□ -0.79
PTCD3-215ENST00000484203 ATMINO43313 823 aaPredicted RBP10.1□□□□□ -0.79
PTCD3-215ENST00000484203 TAOK2Q9UL54 1235 aa10.1□□□□□ -0.79
PTCD3-215ENST00000484203 EPRSP07814 1512 aaKnown RBP10.1□□□□□ -0.79
PTCD3-215ENST00000484203 VGFO15240 615 aaPredicted RBP10.09□□□□□ -0.79
PTCD3-215ENST00000484203 UBTFP17480 764 aaKnown RBP10.09□□□□□ -0.79
PTCD3-215ENST00000484203 P3H3Q8IVL6 736 aa10.09□□□□□ -0.79
PTCD3-215ENST00000484203 SLC39A7Q92504 469 aa10.09□□□□□ -0.79
PTCD3-215ENST00000484203 C7P10643 843 aa10.08□□□□□ -0.8
PTCD3-215ENST00000484203 ABCA8O94911 1581 aa10.07□□□□□ -0.8
PTCD3-215ENST00000484203 PELP1Q8IZL8 1130 aaKnown RBP10.07□□□□□ -0.8
PTCD3-215ENST00000484203 KCNH8Q96L42 1107 aa10.07□□□□□ -0.8
PTCD3-215ENST00000484203 TRPC6Q9Y210 931 aa10.07□□□□□ -0.8
PTCD3-215ENST00000484203 CTTNBP2Q8WZ74 1663 aa10.06□□□□□ -0.8
PTCD3-215ENST00000484203 PHLDB1Q86UU1 1377 aa10.06□□□□□ -0.8
PTCD3-215ENST00000484203 PSEN1P49768 467 aa10.06□□□□□ -0.8
PTCD3-215ENST00000484203 PDAP1Q13442 181 aaKnown RBP10.06□□□□□ -0.8
PTCD3-215ENST00000484203 CD109Q6YHK3 1445 aa10.06□□□□□ -0.8
PTCD3-215ENST00000484203 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.05□□□□□ -0.8
PTCD3-215ENST00000484203 PLEKHD1A6NEE1 506 aa10.05□□□□□ -0.8
PTCD3-215ENST00000484203 TIE1P35590 1138 aa10.05□□□□□ -0.8
PTCD3-215ENST00000484203 ZFP91Q96JP5 570 aaPredicted RBP10.05□□□□□ -0.8
PTCD3-215ENST00000484203 METRNQ9UJH8 293 aa10.05□□□□□ -0.8
PTCD3-215ENST00000484203 KIF13AQ9H1H9 1805 aa10.05□□□□□ -0.8
PTCD3-215ENST00000484203 RANGAP1P46060 587 aaPredicted RBP10.04□□□□□ -0.8
PTCD3-215ENST00000484203 ATP10BO94823 1461 aa10.04□□□□□ -0.8
PTCD3-215ENST00000484203 KIF21BO75037 1637 aa10.04□□□□□ -0.8
PTCD3-215ENST00000484203 EFCAB5A4FU69 1503 aa10.03□□□□□ -0.8
PTCD3-215ENST00000484203 MAGI3Q5TCQ9 1506 aa10.03□□□□□ -0.8
PTCD3-215ENST00000484203 ATN1P54259 1190 aaPredicted RBP10.03□□□□□ -0.8
PTCD3-215ENST00000484203 BMP2KQ9NSY1 1161 aaPredicted RBP10.03□□□□□ -0.8
PTCD3-215ENST00000484203 KDM6BO15054 1643 aa10.03□□□□□ -0.8
PTCD3-215ENST00000484203 SAMD9Q5K651 1589 aa10.02□□□□□ -0.81
PTCD3-215ENST00000484203 TMEM106CQ9BVX2 250 aa10.02□□□□□ -0.81
PTCD3-215ENST00000484203 CDK11AQ9UQ88 783 aaPredicted RBP10.02□□□□□ -0.81
PTCD3-215ENST00000484203 ZCCHC11Q5TAX3 1644 aaKnown RBP10.02□□□□□ -0.81
PTCD3-215ENST00000484203 FMN1Q68DA7 1419 aa10.01□□□□□ -0.81
PTCD3-215ENST00000484203 STK25O00506 426 aa10.01□□□□□ -0.81
PTCD3-215ENST00000484203 CHGAP10645 457 aaKnown RBP10.01□□□□□ -0.81
PTCD3-215ENST00000484203 FHOD3Q2V2M9 1422 aa10□□□□□ -0.81
PTCD3-215ENST00000484203 ARID3CA6NKF2 412 aa10□□□□□ -0.81
PTCD3-215ENST00000484203 BCL11BQ9C0K0 894 aaPredicted RBP9.99□□□□□ -0.81
PTCD3-215ENST00000484203 STK24Q9Y6E0 443 aa9.99□□□□□ -0.81
PTCD3-215ENST00000484203 TTLL13PA6NNM8 815 aa9.98□□□□□ -0.81
PTCD3-215ENST00000484203 NUP153P49790 1475 aaKnown RBP9.98□□□□□ -0.81
PTCD3-215ENST00000484203 MAP3K4Q9Y6R4 1608 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms