RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 HNRNPUL2Q1KMD3 747 aaKnown RBP21.47■■□□□ 1.03
SMAD9-204ENST00000483941 FANCAO15360 1455 aa21.46■■□□□ 1.03
SMAD9-204ENST00000483941 LRRC9Q6ZRR7 1453 aa21.46■■□□□ 1.03
SMAD9-204ENST00000483941 ZMYM4Q5VZL5 1548 aa21.46■■□□□ 1.03
SMAD9-204ENST00000483941 MTUS2Q5JR59 1369 aa21.46■■□□□ 1.03
SMAD9-204ENST00000483941 SIGLEC1Q9BZZ2 1709 aa21.46■■□□□ 1.03
SMAD9-204ENST00000483941 FER1L4A9Z1Z3 1794 aa21.45■■□□□ 1.02
SMAD9-204ENST00000483941 PPARGC1BQ86YN6 1023 aaKnown RBP21.44■■□□□ 1.02
SMAD9-204ENST00000483941 TRIM26Q12899 539 aaPredicted RBP21.43■■□□□ 1.02
SMAD9-204ENST00000483941 KANK4Q5T7N3 995 aaPredicted RBP21.43■■□□□ 1.02
SMAD9-204ENST00000483941 POGZQ7Z3K3 1410 aa21.43■■□□□ 1.02
SMAD9-204ENST00000483941 AKNAQ7Z591 1439 aa21.43■■□□□ 1.02
SMAD9-204ENST00000483941 ZFYVE16Q7Z3T8 1539 aa21.43■■□□□ 1.02
SMAD9-204ENST00000483941 TTC37Q6PGP7 1564 aa21.41■■□□□ 1.02
SMAD9-204ENST00000483941 HSPA2P54652 639 aa21.41■■□□□ 1.02
SMAD9-204ENST00000483941 PLEKHD1A6NEE1 506 aa21.4■■□□□ 1.02
SMAD9-204ENST00000483941 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.39■■□□□ 1.02
SMAD9-204ENST00000483941 EHBP1L1Q8N3D4 1523 aa21.38■■□□□ 1.01
SMAD9-204ENST00000483941 PLPPR3Q6T4P5 718 aa21.36■■□□□ 1.01
SMAD9-204ENST00000483941 YEATS2Q9ULM3 1422 aa21.36■■□□□ 1.01
SMAD9-204ENST00000483941 CDK13Q14004 1512 aaKnown RBP21.35■■□□□ 1.01
SMAD9-204ENST00000483941 MAGI2Q86UL8 1455 aa21.35■■□□□ 1.01
SMAD9-204ENST00000483941 PREX1Q8TCU6 1659 aa21.34■■□□□ 1.01
SMAD9-204ENST00000483941 CERKQ8TCT0 537 aa21.33■■□□□ 1.01
SMAD9-204ENST00000483941 TROQ12816 1431 aaPredicted RBP21.32■■□□□ 1
SMAD9-204ENST00000483941 LRRIQ1Q96JM4 1722 aa21.32■■□□□ 1
SMAD9-204ENST00000483941 ARHGEF12Q9NZN5 1544 aa21.29■■□□□ 1
SMAD9-204ENST00000483941 SUPT6HQ7KZ85 1726 aaKnown RBP21.27■■□□□ 1
SMAD9-204ENST00000483941 MLECQ14165 292 aa21.26■□□□□ 0.99
SMAD9-204ENST00000483941 MYO5CQ9NQX4 1742 aa21.25■□□□□ 0.99
SMAD9-204ENST00000483941 NCOA2Q15596 1464 aa21.25■□□□□ 0.99
SMAD9-204ENST00000483941 C9orf84Q5VXU9 1444 aa21.23■□□□□ 0.99
SMAD9-204ENST00000483941 STRCQ7RTU9 1775 aa21.23■□□□□ 0.99
SMAD9-204ENST00000483941 SCAPERQ9BY12 1400 aa21.22■□□□□ 0.99
SMAD9-204ENST00000483941 ATP10AO60312 1499 aa21.21■□□□□ 0.99
SMAD9-204ENST00000483941 PLCH2O75038 1416 aa21.21■□□□□ 0.99
SMAD9-204ENST00000483941 PCGF6Q9BYE7 350 aa21.2■□□□□ 0.98
SMAD9-204ENST00000483941 CCNB3Q8WWL7 1395 aa21.2■□□□□ 0.98
SMAD9-204ENST00000483941 RRBP1Q9P2E9 1410 aaKnown RBP21.2■□□□□ 0.98
SMAD9-204ENST00000483941 DISP3Q9P2K9 1392 aa21.19■□□□□ 0.98
SMAD9-204ENST00000483941 MYOM3Q5VTT5 1437 aa21.18■□□□□ 0.98
SMAD9-204ENST00000483941 KIF14Q15058 1648 aa21.18■□□□□ 0.98
SMAD9-204ENST00000483941 MIA2Q96PC5 1412 aa21.16■□□□□ 0.98
SMAD9-204ENST00000483941 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.16■□□□□ 0.98
SMAD9-204ENST00000483941 SPATA31D1Q6ZQQ2 1576 aa21.15■□□□□ 0.98
SMAD9-204ENST00000483941 UHRF1BP1Q6BDS2 1440 aa21.14■□□□□ 0.98
SMAD9-204ENST00000483941 KDM5CP41229 1560 aa21.14■□□□□ 0.97
SMAD9-204ENST00000483941 ZNF518AQ6AHZ1 1483 aa21.13■□□□□ 0.97
SMAD9-204ENST00000483941 SETD1BQ9UPS6 1966 aaKnown RBP21.13■□□□□ 0.97
SMAD9-204ENST00000483941 FGD6Q6ZV73 1430 aa21.12■□□□□ 0.97
SMAD9-204ENST00000483941 ILDR2Q71H61 639 aa21.12■□□□□ 0.97
SMAD9-204ENST00000483941 DMRT2Q9Y5R5 561 aa21.11■□□□□ 0.97
SMAD9-204ENST00000483941 C3P01024 1663 aa21.11■□□□□ 0.97
SMAD9-204ENST00000483941 DIP2CQ9Y2E4 1556 aa21.1■□□□□ 0.97
SMAD9-204ENST00000483941 SOCS7O14512 581 aa21.1■□□□□ 0.97
SMAD9-204ENST00000483941 CEBPAP49715 358 aaPredicted RBP21.1■□□□□ 0.97
SMAD9-204ENST00000483941 CFDP1Q9UEE9 299 aaPredicted RBP21.1■□□□□ 0.97
SMAD9-204ENST00000483941 REREQ9P2R6 1566 aa21.1■□□□□ 0.97
SMAD9-204ENST00000483941 FAM50AQ14320 339 aaKnown RBP21.08■□□□□ 0.97
SMAD9-204ENST00000483941 EFCAB2Q5VUJ9 269 aa21.08■□□□□ 0.97
SMAD9-204ENST00000483941 ARHGAP5Q13017 1502 aa21.08■□□□□ 0.96
SMAD9-204ENST00000483941 ABCA6Q8N139 1617 aa21.07■□□□□ 0.96
SMAD9-204ENST00000483941 GPATCH8Q9UKJ3 1502 aaKnown RBP21.06■□□□□ 0.96
SMAD9-204ENST00000483941 ITSN2Q9NZM3 1697 aa21.05■□□□□ 0.96
SMAD9-204ENST00000483941 PTPRTO14522 1441 aa21.04■□□□□ 0.96
SMAD9-204ENST00000483941 TCOF1Q13428 1488 aaKnown RBP21.02■□□□□ 0.96
SMAD9-204ENST00000483941 CDC42BPBQ9Y5S2 1711 aa21.02■□□□□ 0.96
SMAD9-204ENST00000483941 LTBP4Q8N2S1 1624 aa21.01■□□□□ 0.95
SMAD9-204ENST00000483941 IQSEC2Q5JU85 1478 aa21■□□□□ 0.95
SMAD9-204ENST00000483941 PTPN23Q9H3S7 1636 aa21■□□□□ 0.95
SMAD9-204ENST00000483941 PREX2Q70Z35 1606 aa20.99■□□□□ 0.95
SMAD9-204ENST00000483941 AGLP35573 1532 aa20.99■□□□□ 0.95
SMAD9-204ENST00000483941 RSPH4AQ5TD94 716 aa20.98■□□□□ 0.95
SMAD9-204ENST00000483941 AFAP1Q8N556 730 aa20.98■□□□□ 0.95
SMAD9-204ENST00000483941 MYT1LQ9UL68 1186 aa20.98■□□□□ 0.95
SMAD9-204ENST00000483941 MLH3Q9UHC1 1453 aa20.98■□□□□ 0.95
SMAD9-204ENST00000483941 ABCC1P33527 1531 aa20.98■□□□□ 0.95
SMAD9-204ENST00000483941 NCOA1Q15788 1441 aa20.95■□□□□ 0.95
SMAD9-204ENST00000483941 PLEKHH2Q8IVE3 1493 aa20.95■□□□□ 0.94
SMAD9-204ENST00000483941 ZNF777Q9ULD5 760 aaPredicted RBP20.95■□□□□ 0.94
SMAD9-204ENST00000483941 TRAPPC8Q9Y2L5 1435 aa20.95■□□□□ 0.94
SMAD9-204ENST00000483941 MROH2AA6NES4 1674 aa20.94■□□□□ 0.94
SMAD9-204ENST00000483941 CDC42BPAQ5VT25 1732 aa20.93■□□□□ 0.94
SMAD9-204ENST00000483941 KIDINS220Q9ULH0 1771 aa20.93■□□□□ 0.94
SMAD9-204ENST00000483941 ESF1Q9H501 851 aaKnown RBP20.93■□□□□ 0.94
SMAD9-204ENST00000483941 ITGAEP38570 1179 aa20.92■□□□□ 0.94
SMAD9-204ENST00000483941 CNTLNQ9NXG0 1405 aa20.92■□□□□ 0.94
SMAD9-204ENST00000483941 CAMSAP2Q08AD1 1489 aa20.91■□□□□ 0.94
SMAD9-204ENST00000483941 CAMSAP1Q5T5Y3 1602 aa20.9■□□□□ 0.94
SMAD9-204ENST00000483941 KIAA1107Q9UPP5 1409 aa20.89■□□□□ 0.94
SMAD9-204ENST00000483941 ZNF644Q9H582 1327 aaPredicted RBP20.87■□□□□ 0.93
SMAD9-204ENST00000483941 TSPY4P0CV99 314 aa20.87■□□□□ 0.93
SMAD9-204ENST00000483941 TSPY10P0CW01 314 aa20.87■□□□□ 0.93
SMAD9-204ENST00000483941 ZNF142P52746 1687 aaPredicted RBP20.86■□□□□ 0.93
SMAD9-204ENST00000483941 NPATQ14207 1427 aa20.86■□□□□ 0.93
SMAD9-204ENST00000483941 ACIN1Q9UKV3 1341 aaKnown RBP20.85■□□□□ 0.93
SMAD9-204ENST00000483941 MYO3AQ8NEV4 1616 aa20.84■□□□□ 0.93
SMAD9-204ENST00000483941 DAPK1P53355 1430 aa20.84■□□□□ 0.93
SMAD9-204ENST00000483941 SAMD9LQ8IVG5 1584 aa20.83■□□□□ 0.92
SMAD9-204ENST00000483941 CLTCQ00610 1675 aaKnown RBP20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms