RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 FGD6Q6ZV73 1430 aa14.94□□□□□ -0.02
LIMK1-205ENST00000483414 CDK11AQ9UQ88 783 aaPredicted RBP14.93□□□□□ -0.02
LIMK1-205ENST00000483414 FRMPD1Q5SYB0 1578 aa14.92□□□□□ -0.02
LIMK1-205ENST00000483414 RICTORQ6R327 1708 aa14.92□□□□□ -0.02
LIMK1-205ENST00000483414 DNMT1P26358 1616 aaKnown RBP14.92□□□□□ -0.02
LIMK1-205ENST00000483414 TSPOAP1O95153 1857 aa14.92□□□□□ -0.02
LIMK1-205ENST00000483414 ARHGEF5Q12774 1597 aa14.92□□□□□ -0.02
LIMK1-205ENST00000483414 ARHGEF12Q9NZN5 1544 aa14.92□□□□□ -0.02
LIMK1-205ENST00000483414 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.91□□□□□ -0.02
LIMK1-205ENST00000483414 CAMSAP2Q08AD1 1489 aa14.91□□□□□ -0.02
LIMK1-205ENST00000483414 MBD5Q9P267 1494 aa14.9□□□□□ -0.02
LIMK1-205ENST00000483414 NPM1P06748 294 aaKnown RBP eCLIP14.88□□□□□ -0.03
LIMK1-205ENST00000483414 ARHGAP5Q13017 1502 aa14.87□□□□□ -0.03
LIMK1-205ENST00000483414 CD109Q6YHK3 1445 aa14.87□□□□□ -0.03
LIMK1-205ENST00000483414 KDM5CP41229 1560 aa14.87□□□□□ -0.03
LIMK1-205ENST00000483414 NEO1Q92859 1461 aa14.87□□□□□ -0.03
LIMK1-205ENST00000483414 MAST1Q9Y2H9 1570 aa14.87□□□□□ -0.03
LIMK1-205ENST00000483414 FANCAO15360 1455 aa14.86□□□□□ -0.03
LIMK1-205ENST00000483414 SYCP2Q9BX26 1530 aa14.86□□□□□ -0.03
LIMK1-205ENST00000483414 CCNB3Q8WWL7 1395 aa14.86□□□□□ -0.03
LIMK1-205ENST00000483414 APLP2Q06481 763 aa14.86□□□□□ -0.03
LIMK1-205ENST00000483414 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
LIMK1-205ENST00000483414 HNRNPUL2Q1KMD3 747 aaKnown RBP14.85□□□□□ -0.03
LIMK1-205ENST00000483414 ADGBQ8N7X0 1667 aa14.85□□□□□ -0.03
LIMK1-205ENST00000483414 INO80Q9ULG1 1556 aaPredicted RBP14.85□□□□□ -0.03
LIMK1-205ENST00000483414 KIAA1107Q9UPP5 1409 aa14.85□□□□□ -0.03
LIMK1-205ENST00000483414 PTPRKQ15262 1439 aa14.83□□□□□ -0.04
LIMK1-205ENST00000483414 KCNH8Q96L42 1107 aa14.82□□□□□ -0.04
LIMK1-205ENST00000483414 ZMYM4Q5VZL5 1548 aa14.82□□□□□ -0.04
LIMK1-205ENST00000483414 SHANK2Q9UPX8 1470 aa14.82□□□□□ -0.04
LIMK1-205ENST00000483414 TRIM26Q12899 539 aaPredicted RBP14.81□□□□□ -0.04
LIMK1-205ENST00000483414 KIDINS220Q9ULH0 1771 aa14.81□□□□□ -0.04
LIMK1-205ENST00000483414 PLXNC1O60486 1568 aa14.8□□□□□ -0.04
LIMK1-205ENST00000483414 GCC2Q8IWJ2 1684 aa14.8□□□□□ -0.04
LIMK1-205ENST00000483414 ZNF644Q9H582 1327 aaPredicted RBP14.8□□□□□ -0.04
LIMK1-205ENST00000483414 AKNAQ7Z591 1439 aa14.8□□□□□ -0.04
LIMK1-205ENST00000483414 ZFYVE16Q7Z3T8 1539 aa14.8□□□□□ -0.04
LIMK1-205ENST00000483414 ABCC5O15440 1437 aa14.79□□□□□ -0.04
LIMK1-205ENST00000483414 PLEKHH2Q8IVE3 1493 aa14.79□□□□□ -0.04
LIMK1-205ENST00000483414 TEX14Q8IWB6 1497 aa14.79□□□□□ -0.04
LIMK1-205ENST00000483414 COL17A1Q9UMD9 1497 aaPredicted RBP14.79□□□□□ -0.04
LIMK1-205ENST00000483414 DAPK1P53355 1430 aa14.79□□□□□ -0.04
LIMK1-205ENST00000483414 ADGRL2O95490 1459 aa14.78□□□□□ -0.04
LIMK1-205ENST00000483414 FAM69CQ0P6D2 419 aa14.78□□□□□ -0.04
LIMK1-205ENST00000483414 POGZQ7Z3K3 1410 aa14.78□□□□□ -0.04
LIMK1-205ENST00000483414 ADGRL1O94910 1474 aa14.78□□□□□ -0.04
LIMK1-205ENST00000483414 SIGLEC1Q9BZZ2 1709 aa14.77□□□□□ -0.04
LIMK1-205ENST00000483414 TRAPPC8Q9Y2L5 1435 aa14.77□□□□□ -0.05
LIMK1-205ENST00000483414 BCORL1Q5H9F3 1711 aa14.76□□□□□ -0.05
LIMK1-205ENST00000483414 CCDC141Q6ZP82 1450 aa14.76□□□□□ -0.05
LIMK1-205ENST00000483414 HECW2Q9P2P5 1572 aa14.75□□□□□ -0.05
LIMK1-205ENST00000483414 ABCA6Q8N139 1617 aa14.75□□□□□ -0.05
LIMK1-205ENST00000483414 CFDP1Q9UEE9 299 aaPredicted RBP14.74□□□□□ -0.05
LIMK1-205ENST00000483414 ZNF518AQ6AHZ1 1483 aa14.72□□□□□ -0.05
LIMK1-205ENST00000483414 KDM6BO15054 1643 aa14.72□□□□□ -0.05
LIMK1-205ENST00000483414 ATP7AQ04656 1500 aa14.71□□□□□ -0.05
LIMK1-205ENST00000483414 MLH3Q9UHC1 1453 aa14.71□□□□□ -0.05
LIMK1-205ENST00000483414 DIP2CQ9Y2E4 1556 aa14.71□□□□□ -0.05
LIMK1-205ENST00000483414 REREQ9P2R6 1566 aa14.7□□□□□ -0.06
LIMK1-205ENST00000483414 SCAPERQ9BY12 1400 aa14.7□□□□□ -0.06
LIMK1-205ENST00000483414 EFCAB2Q5VUJ9 269 aa14.7□□□□□ -0.06
LIMK1-205ENST00000483414 RTEL1-TNFRSF6BF6WH68 1400 aa14.7□□□□□ -0.06
LIMK1-205ENST00000483414 ROCK1Q13464 1354 aa14.69□□□□□ -0.06
LIMK1-205ENST00000483414 ARHGEF40Q8TER5 1519 aa14.69□□□□□ -0.06
LIMK1-205ENST00000483414 DEPDC5O75140 1603 aa14.68□□□□□ -0.06
LIMK1-205ENST00000483414 DENND4BO75064 1496 aaPredicted RBP14.68□□□□□ -0.06
LIMK1-205ENST00000483414 C9orf84Q5VXU9 1444 aa14.68□□□□□ -0.06
LIMK1-205ENST00000483414 EIF2AK4Q9P2K8 1649 aaKnown RBP14.67□□□□□ -0.06
LIMK1-205ENST00000483414 NCOA1Q15788 1441 aa14.66□□□□□ -0.06
LIMK1-205ENST00000483414 HFM1A2PYH4 1435 aa14.66□□□□□ -0.06
LIMK1-205ENST00000483414 MROH1Q8NDA8 1641 aa14.65□□□□□ -0.06
LIMK1-205ENST00000483414 HNRNPMP52272 730 aaKnown RBP eCLIP14.65□□□□□ -0.06
LIMK1-205ENST00000483414 MAGI2Q86UL8 1455 aa14.65□□□□□ -0.06
LIMK1-205ENST00000483414 NAIPQ13075 1403 aa14.64□□□□□ -0.07
LIMK1-205ENST00000483414 RNF17Q9BXT8 1623 aaKnown RBP14.64□□□□□ -0.07
LIMK1-205ENST00000483414 UNC13BO14795 1591 aa14.64□□□□□ -0.07
LIMK1-205ENST00000483414 RSPH4AQ5TD94 716 aa14.62□□□□□ -0.07
LIMK1-205ENST00000483414 DUOX2Q9NRD8 1548 aa14.61□□□□□ -0.07
LIMK1-205ENST00000483414 YEATS2Q9ULM3 1422 aa14.6□□□□□ -0.07
LIMK1-205ENST00000483414 ZNF777Q9ULD5 760 aaPredicted RBP14.6□□□□□ -0.07
LIMK1-205ENST00000483414 VWDEQ8N2E2 1590 aa14.6□□□□□ -0.07
LIMK1-205ENST00000483414 AFAP1Q8N556 730 aa14.6□□□□□ -0.07
LIMK1-205ENST00000483414 SCAF1Q9H7N4 1312 aaKnown RBP14.6□□□□□ -0.07
LIMK1-205ENST00000483414 FAM50AQ14320 339 aaKnown RBP14.59□□□□□ -0.07
LIMK1-205ENST00000483414 KDM5DQ9BY66 1539 aa14.59□□□□□ -0.07
LIMK1-205ENST00000483414 ERBINQ96RT1 1412 aa14.58□□□□□ -0.08
LIMK1-205ENST00000483414 RAPGEF3O95398 923 aa14.57□□□□□ -0.08
LIMK1-205ENST00000483414 AGLP35573 1532 aa14.57□□□□□ -0.08
LIMK1-205ENST00000483414 PRDM15P57071 1507 aaPredicted RBP14.57□□□□□ -0.08
LIMK1-205ENST00000483414 IQGAP3Q86VI3 1631 aa14.55□□□□□ -0.08
LIMK1-205ENST00000483414 TRHP20396 242 aaPredicted RBP14.54□□□□□ -0.08
LIMK1-205ENST00000483414 ANKRD30AQ9BXX3 1397 aa14.53□□□□□ -0.08
LIMK1-205ENST00000483414 KIF15Q9NS87 1388 aa14.53□□□□□ -0.08
LIMK1-205ENST00000483414 A2MP01023 1474 aa14.53□□□□□ -0.08
LIMK1-205ENST00000483414 ATP10AO60312 1499 aa14.53□□□□□ -0.08
LIMK1-205ENST00000483414 SPAG9O60271 1321 aaKnown RBP14.52□□□□□ -0.09
LIMK1-205ENST00000483414 SETD5Q9C0A6 1442 aa14.51□□□□□ -0.09
LIMK1-205ENST00000483414 ZC3H13Q5T200 1668 aaKnown RBP14.51□□□□□ -0.09
LIMK1-205ENST00000483414 DHX29Q7Z478 1369 aaKnown RBP14.5□□□□□ -0.09
LIMK1-205ENST00000483414 ANKRD50Q9ULJ7 1429 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms