RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 NPM1P06748 294 aaKnown RBP eCLIP12.66□□□□□ -0.38
USP4-210ENST00000483212 ITSN2Q9NZM3 1697 aa12.65□□□□□ -0.38
USP4-210ENST00000483212 PREX2Q70Z35 1606 aa12.65□□□□□ -0.38
USP4-210ENST00000483212 ABCA9Q8IUA7 1624 aa12.65□□□□□ -0.38
USP4-210ENST00000483212 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.65□□□□□ -0.38
USP4-210ENST00000483212 PTPN23Q9H3S7 1636 aa12.64□□□□□ -0.39
USP4-210ENST00000483212 PCGF6Q9BYE7 350 aa12.63□□□□□ -0.39
USP4-210ENST00000483212 CDC42BPBQ9Y5S2 1711 aa12.62□□□□□ -0.39
USP4-210ENST00000483212 KCNH8Q96L42 1107 aa12.61□□□□□ -0.39
USP4-210ENST00000483212 MYO5CQ9NQX4 1742 aa12.61□□□□□ -0.39
USP4-210ENST00000483212 ARAP3Q8WWN8 1544 aa12.61□□□□□ -0.39
USP4-210ENST00000483212 PLCH2O75038 1416 aa12.61□□□□□ -0.39
USP4-210ENST00000483212 GLI2P10070 1586 aa12.6□□□□□ -0.39
USP4-210ENST00000483212 CAMSAP2Q08AD1 1489 aa12.59□□□□□ -0.39
USP4-210ENST00000483212 DIP2BQ9P265 1576 aa12.59□□□□□ -0.39
USP4-210ENST00000483212 SAMD9LQ8IVG5 1584 aa12.58□□□□□ -0.4
USP4-210ENST00000483212 CFDP1Q9UEE9 299 aaPredicted RBP12.57□□□□□ -0.4
USP4-210ENST00000483212 ZNF644Q9H582 1327 aaPredicted RBP12.57□□□□□ -0.4
USP4-210ENST00000483212 PTPRKQ15262 1439 aa12.56□□□□□ -0.4
USP4-210ENST00000483212 MAP3K4Q9Y6R4 1608 aa12.56□□□□□ -0.4
USP4-210ENST00000483212 ARHGAP5Q13017 1502 aa12.56□□□□□ -0.4
USP4-210ENST00000483212 FAM50AQ14320 339 aaKnown RBP12.55□□□□□ -0.4
USP4-210ENST00000483212 DNMT1P26358 1616 aaKnown RBP12.55□□□□□ -0.4
USP4-210ENST00000483212 MBD5Q9P267 1494 aa12.54□□□□□ -0.4
USP4-210ENST00000483212 ABCC5O15440 1437 aa12.54□□□□□ -0.4
USP4-210ENST00000483212 ABCC1P33527 1531 aa12.53□□□□□ -0.4
USP4-210ENST00000483212 DAPK1P53355 1430 aa12.53□□□□□ -0.4
USP4-210ENST00000483212 CD109Q6YHK3 1445 aa12.53□□□□□ -0.4
USP4-210ENST00000483212 KIAA1107Q9UPP5 1409 aa12.53□□□□□ -0.4
USP4-210ENST00000483212 ARHGEF12Q9NZN5 1544 aa12.52□□□□□ -0.4
USP4-210ENST00000483212 ARHGEF5Q12774 1597 aa12.52□□□□□ -0.4
USP4-210ENST00000483212 FANCAO15360 1455 aa12.52□□□□□ -0.41
USP4-210ENST00000483212 CROCC2H7BZ55 1655 aa12.51□□□□□ -0.41
USP4-210ENST00000483212 KIF13AQ9H1H9 1805 aa12.51□□□□□ -0.41
USP4-210ENST00000483212 PLEKHH2Q8IVE3 1493 aa12.51□□□□□ -0.41
USP4-210ENST00000483212 SYCP2Q9BX26 1530 aa12.51□□□□□ -0.41
USP4-210ENST00000483212 EFCAB2Q5VUJ9 269 aa12.5□□□□□ -0.41
USP4-210ENST00000483212 ZNF777Q9ULD5 760 aaPredicted RBP12.5□□□□□ -0.41
USP4-210ENST00000483212 DMRT2Q9Y5R5 561 aa12.5□□□□□ -0.41
USP4-210ENST00000483212 PPRC1Q5VV67 1664 aaKnown RBP12.5□□□□□ -0.41
USP4-210ENST00000483212 SHANK2Q9UPX8 1470 aa12.49□□□□□ -0.41
USP4-210ENST00000483212 RNF39Q9H2S5 420 aa12.49□□□□□ -0.41
USP4-210ENST00000483212 CFAP74Q9C0B2 1584 aa12.48□□□□□ -0.41
USP4-210ENST00000483212 CCDC141Q6ZP82 1450 aa12.48□□□□□ -0.41
USP4-210ENST00000483212 AKNAQ7Z591 1439 aa12.48□□□□□ -0.41
USP4-210ENST00000483212 FAM69CQ0P6D2 419 aa12.48□□□□□ -0.41
USP4-210ENST00000483212 ADGRL2O95490 1459 aa12.47□□□□□ -0.41
USP4-210ENST00000483212 NEO1Q92859 1461 aa12.47□□□□□ -0.41
USP4-210ENST00000483212 ITGAEP38570 1179 aa12.47□□□□□ -0.41
USP4-210ENST00000483212 MAST1Q9Y2H9 1570 aa12.47□□□□□ -0.41
USP4-210ENST00000483212 HNRNPMP52272 730 aaKnown RBP eCLIP12.46□□□□□ -0.41
USP4-210ENST00000483212 ADGRL1O94910 1474 aa12.46□□□□□ -0.42
USP4-210ENST00000483212 HFM1A2PYH4 1435 aa12.45□□□□□ -0.42
USP4-210ENST00000483212 TRAPPC8Q9Y2L5 1435 aa12.45□□□□□ -0.42
USP4-210ENST00000483212 ROCK1Q13464 1354 aa12.45□□□□□ -0.42
USP4-210ENST00000483212 RSPH4AQ5TD94 716 aa12.44□□□□□ -0.42
USP4-210ENST00000483212 ADGBQ8N7X0 1667 aa12.44□□□□□ -0.42
USP4-210ENST00000483212 NAIPQ13075 1403 aa12.44□□□□□ -0.42
USP4-210ENST00000483212 C9orf84Q5VXU9 1444 aa12.44□□□□□ -0.42
USP4-210ENST00000483212 GCC2Q8IWJ2 1684 aa12.43□□□□□ -0.42
USP4-210ENST00000483212 SCAPERQ9BY12 1400 aa12.43□□□□□ -0.42
USP4-210ENST00000483212 NCOA1Q15788 1441 aa12.42□□□□□ -0.42
USP4-210ENST00000483212 TEX14Q8IWB6 1497 aa12.41□□□□□ -0.42
USP4-210ENST00000483212 KDM5CP41229 1560 aa12.41□□□□□ -0.42
USP4-210ENST00000483212 POGZQ7Z3K3 1410 aa12.41□□□□□ -0.42
USP4-210ENST00000483212 SETD5Q9C0A6 1442 aa12.41□□□□□ -0.42
USP4-210ENST00000483212 INO80Q9ULG1 1556 aaPredicted RBP12.41□□□□□ -0.42
USP4-210ENST00000483212 ZFYVE16Q7Z3T8 1539 aa12.41□□□□□ -0.42
USP4-210ENST00000483212 PLXNC1O60486 1568 aa12.4□□□□□ -0.42
USP4-210ENST00000483212 CHIC2Q9UKJ5 165 aa12.4□□□□□ -0.42
USP4-210ENST00000483212 RAB3GAP2Q9H2M9 1393 aa12.4□□□□□ -0.42
USP4-210ENST00000483212 FRMPD1Q5SYB0 1578 aa12.39□□□□□ -0.43
USP4-210ENST00000483212 TSPOAP1O95153 1857 aa12.39□□□□□ -0.43
USP4-210ENST00000483212 KDM6BO15054 1643 aa12.39□□□□□ -0.43
USP4-210ENST00000483212 ZNF518AQ6AHZ1 1483 aa12.39□□□□□ -0.43
USP4-210ENST00000483212 RTEL1-TNFRSF6BF6WH68 1400 aa12.38□□□□□ -0.43
USP4-210ENST00000483212 RICTORQ6R327 1708 aa12.38□□□□□ -0.43
USP4-210ENST00000483212 AFAP1Q8N556 730 aa12.38□□□□□ -0.43
USP4-210ENST00000483212 ANKRD30AQ9BXX3 1397 aa12.38□□□□□ -0.43
USP4-210ENST00000483212 DENND4BO75064 1496 aaPredicted RBP12.38□□□□□ -0.43
USP4-210ENST00000483212 TSPY4P0CV99 314 aa12.37□□□□□ -0.43
USP4-210ENST00000483212 TSPY10P0CW01 314 aa12.37□□□□□ -0.43
USP4-210ENST00000483212 RRP7BPQ9NSQ0 103 aa12.37□□□□□ -0.43
USP4-210ENST00000483212 ATP7AQ04656 1500 aa12.37□□□□□ -0.43
USP4-210ENST00000483212 MLH3Q9UHC1 1453 aa12.36□□□□□ -0.43
USP4-210ENST00000483212 HRCP23327 699 aa12.36□□□□□ -0.43
USP4-210ENST00000483212 KIDINS220Q9ULH0 1771 aa12.35□□□□□ -0.43
USP4-210ENST00000483212 COL17A1Q9UMD9 1497 aaPredicted RBP12.35□□□□□ -0.43
USP4-210ENST00000483212 KIF15Q9NS87 1388 aa12.35□□□□□ -0.43
USP4-210ENST00000483212 ZMYM4Q5VZL5 1548 aa12.35□□□□□ -0.43
USP4-210ENST00000483212 SPAG9O60271 1321 aaKnown RBP12.35□□□□□ -0.43
USP4-210ENST00000483212 HECW2Q9P2P5 1572 aa12.34□□□□□ -0.43
USP4-210ENST00000483212 DUOX2Q9NRD8 1548 aa12.32□□□□□ -0.44
USP4-210ENST00000483212 ANKRD50Q9ULJ7 1429 aa12.32□□□□□ -0.44
USP4-210ENST00000483212 RAPGEF3O95398 923 aa12.32□□□□□ -0.44
USP4-210ENST00000483212 DHX57Q6P158 1386 aaKnown RBP12.31□□□□□ -0.44
USP4-210ENST00000483212 ABCA6Q8N139 1617 aa12.31□□□□□ -0.44
USP4-210ENST00000483212 ERBINQ96RT1 1412 aa12.3□□□□□ -0.44
USP4-210ENST00000483212 DIP2CQ9Y2E4 1556 aa12.3□□□□□ -0.44
USP4-210ENST00000483212 MAGI2Q86UL8 1455 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms