RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 PRXQ9BXM0 1461 aa7.11□□□□□ -1.27
VPS13D-208ENST00000481484 EEA1Q15075 1411 aa7.1□□□□□ -1.27
VPS13D-208ENST00000481484 UACAQ9BZF9 1416 aa7.1□□□□□ -1.27
VPS13D-208ENST00000481484 PPRC1Q5VV67 1664 aaKnown RBP7.1□□□□□ -1.27
VPS13D-208ENST00000481484 CREBZFQ9NS37 354 aa7.1□□□□□ -1.27
VPS13D-208ENST00000481484 CFAP43Q8NDM7 1665 aa7.09□□□□□ -1.27
VPS13D-208ENST00000481484 TEX14Q8IWB6 1497 aa7.09□□□□□ -1.27
VPS13D-208ENST00000481484 SAMD9Q5K651 1589 aa7.08□□□□□ -1.28
VPS13D-208ENST00000481484 FARP1Q9Y4F1 1045 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-208ENST00000481484 ASXL2Q76L83 1435 aa7.08□□□□□ -1.28
VPS13D-208ENST00000481484 ABCA8O94911 1581 aa7.08□□□□□ -1.28
VPS13D-208ENST00000481484 C19orf67A6NJJ6 358 aa7.07□□□□□ -1.28
VPS13D-208ENST00000481484 EVX2Q03828 476 aa7.07□□□□□ -1.28
VPS13D-208ENST00000481484 WDR7Q9Y4E6 1490 aa7.06□□□□□ -1.28
VPS13D-208ENST00000481484 KIF21BO75037 1637 aa7.06□□□□□ -1.28
VPS13D-208ENST00000481484 SP7Q8TDD2 431 aaPredicted RBP7.06□□□□□ -1.28
VPS13D-208ENST00000481484 EFCAB5A4FU69 1503 aa7.06□□□□□ -1.28
VPS13D-208ENST00000481484 EPRSP07814 1512 aaKnown RBP7.06□□□□□ -1.28
VPS13D-208ENST00000481484 FAM69CQ0P6D2 419 aa7.04□□□□□ -1.28
VPS13D-208ENST00000481484 RAPGEF6Q8TEU7 1601 aa7.04□□□□□ -1.28
VPS13D-208ENST00000481484 MNX1P50219 401 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-208ENST00000481484 CFAP74Q9C0B2 1584 aa7.02□□□□□ -1.29
VPS13D-208ENST00000481484 MAGI3Q5TCQ9 1506 aa7.01□□□□□ -1.29
VPS13D-208ENST00000481484 ABCA9Q8IUA7 1624 aa7.01□□□□□ -1.29
VPS13D-208ENST00000481484 FAM9AQ8IZU1 332 aaPredicted RBP7□□□□□ -1.29
VPS13D-208ENST00000481484 CD44P16070 742 aaKnown RBP6.97□□□□□ -1.29
VPS13D-208ENST00000481484 HECW1Q76N89 1606 aa6.97□□□□□ -1.29
VPS13D-208ENST00000481484 PHLDB1Q86UU1 1377 aa6.96□□□□□ -1.29
VPS13D-208ENST00000481484 MIER1Q8N108 512 aa6.96□□□□□ -1.3
VPS13D-208ENST00000481484 NEO1Q92859 1461 aa6.96□□□□□ -1.3
VPS13D-208ENST00000481484 ARAP3Q8WWN8 1544 aa6.96□□□□□ -1.3
VPS13D-208ENST00000481484 CD109Q6YHK3 1445 aa6.95□□□□□ -1.3
VPS13D-208ENST00000481484 FBXO3Q9UK99 471 aa6.95□□□□□ -1.3
VPS13D-208ENST00000481484 ADGRL1O94910 1474 aa6.95□□□□□ -1.3
VPS13D-208ENST00000481484 NUP153P49790 1475 aaKnown RBP6.95□□□□□ -1.3
VPS13D-208ENST00000481484 ARHGEF40Q8TER5 1519 aa6.95□□□□□ -1.3
VPS13D-208ENST00000481484 MYO5CQ9NQX4 1742 aa6.93□□□□□ -1.3
VPS13D-208ENST00000481484 ATP10BO94823 1461 aa6.93□□□□□ -1.3
VPS13D-208ENST00000481484 PLEKHG5O94827 1062 aa6.93□□□□□ -1.3
VPS13D-208ENST00000481484 TTBK1Q5TCY1 1321 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-208ENST00000481484 RICTORQ6R327 1708 aa6.93□□□□□ -1.3
VPS13D-208ENST00000481484 FMN1Q68DA7 1419 aa6.93□□□□□ -1.3
VPS13D-208ENST00000481484 ZMYM4Q5VZL5 1548 aa6.92□□□□□ -1.3
VPS13D-208ENST00000481484 FHOD3Q2V2M9 1422 aa6.92□□□□□ -1.3
VPS13D-208ENST00000481484 FRMPD1Q5SYB0 1578 aa6.91□□□□□ -1.3
VPS13D-208ENST00000481484 KIF14Q15058 1648 aa6.91□□□□□ -1.3
VPS13D-208ENST00000481484 GABBR2O75899 941 aa6.91□□□□□ -1.3
VPS13D-208ENST00000481484 PLCD3Q8N3E9 789 aa6.91□□□□□ -1.3
VPS13D-208ENST00000481484 COL17A1Q9UMD9 1497 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-208ENST00000481484 TTC37Q6PGP7 1564 aa6.91□□□□□ -1.3
VPS13D-208ENST00000481484 CLCN6P51797 869 aa6.9□□□□□ -1.3
VPS13D-208ENST00000481484 ZRANB1Q9UGI0 708 aa6.9□□□□□ -1.3
VPS13D-208ENST00000481484 ZNF579Q8NAF0 562 aaKnown RBP6.89□□□□□ -1.31
VPS13D-208ENST00000481484 BCORL1Q5H9F3 1711 aa6.89□□□□□ -1.31
VPS13D-208ENST00000481484 ADAMTSL3P82987 1691 aa6.88□□□□□ -1.31
VPS13D-208ENST00000481484 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS13D-208ENST00000481484 CCDC18Q5T9S5 1454 aa6.88□□□□□ -1.31
VPS13D-208ENST00000481484 FANCAO15360 1455 aa6.87□□□□□ -1.31
VPS13D-208ENST00000481484 MAGI2Q86UL8 1455 aa6.87□□□□□ -1.31
VPS13D-208ENST00000481484 PAK3O75914 559 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-208ENST00000481484 ZBTB47Q9UFB7 747 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-208ENST00000481484 PREX2Q70Z35 1606 aa6.87□□□□□ -1.31
VPS13D-208ENST00000481484 PCF11O94913 1555 aaKnown RBP6.86□□□□□ -1.31
VPS13D-208ENST00000481484 HECW2Q9P2P5 1572 aa6.86□□□□□ -1.31
VPS13D-208ENST00000481484 CDK13Q14004 1512 aaKnown RBP6.86□□□□□ -1.31
VPS13D-208ENST00000481484 ZFYVE16Q7Z3T8 1539 aa6.86□□□□□ -1.31
VPS13D-208ENST00000481484 FYCO1Q9BQS8 1478 aa6.86□□□□□ -1.31
VPS13D-208ENST00000481484 ARHGAP35Q9NRY4 1499 aa6.86□□□□□ -1.31
VPS13D-208ENST00000481484 CLIP1P30622 1438 aa6.86□□□□□ -1.31
VPS13D-208ENST00000481484 LRRIQ1Q96JM4 1722 aa6.86□□□□□ -1.31
VPS13D-208ENST00000481484 DENND4BO75064 1496 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-208ENST00000481484 FER1L4A9Z1Z3 1794 aa6.85□□□□□ -1.31
VPS13D-208ENST00000481484 POGZQ7Z3K3 1410 aa6.84□□□□□ -1.31
VPS13D-208ENST00000481484 MADDQ8WXG6 1647 aa6.84□□□□□ -1.31
VPS13D-208ENST00000481484 KDM5CP41229 1560 aa6.84□□□□□ -1.31
VPS13D-208ENST00000481484 REREQ9P2R6 1566 aa6.84□□□□□ -1.31
VPS13D-208ENST00000481484 KDM4FA0A1W2PPD8 638 aa6.84□□□□□ -1.31
VPS13D-208ENST00000481484 VASPP50552 380 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-208ENST00000481484 TROQ12816 1431 aaPredicted RBP6.84□□□□□ -1.32
VPS13D-208ENST00000481484 AKNAQ7Z591 1439 aa6.84□□□□□ -1.32
VPS13D-208ENST00000481484 NUBP1P53384 320 aa6.83□□□□□ -1.32
VPS13D-208ENST00000481484 KCNH8Q96L42 1107 aa6.83□□□□□ -1.32
VPS13D-208ENST00000481484 ZNF518AQ6AHZ1 1483 aa6.83□□□□□ -1.32
VPS13D-208ENST00000481484 ITSN2Q9NZM3 1697 aa6.83□□□□□ -1.32
VPS13D-208ENST00000481484 RIMS1Q86UR5 1692 aaKnown RBP6.82□□□□□ -1.32
VPS13D-208ENST00000481484 PLEKHD1A6NEE1 506 aa6.82□□□□□ -1.32
VPS13D-208ENST00000481484 RASEFQ8IZ41 740 aa6.82□□□□□ -1.32
VPS13D-208ENST00000481484 TSPYL2Q9H2G4 693 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-208ENST00000481484 CDK11AQ9UQ88 783 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-208ENST00000481484 CCDC61Q9Y6R9 512 aa6.82□□□□□ -1.32
VPS13D-208ENST00000481484 CASKIN1Q8WXD9 1431 aa6.82□□□□□ -1.32
VPS13D-208ENST00000481484 CDC42BPAQ5VT25 1732 aa6.81□□□□□ -1.32
VPS13D-208ENST00000481484 CDC42BPBQ9Y5S2 1711 aa6.81□□□□□ -1.32
VPS13D-208ENST00000481484 ABCC1P33527 1531 aa6.81□□□□□ -1.32
VPS13D-208ENST00000481484 ARHGAP5Q13017 1502 aa6.81□□□□□ -1.32
VPS13D-208ENST00000481484 P3H3Q8IVL6 736 aa6.81□□□□□ -1.32
VPS13D-208ENST00000481484 PLCH2O75038 1416 aa6.81□□□□□ -1.32
VPS13D-208ENST00000481484 PTPRMP28827 1452 aa6.8□□□□□ -1.32
VPS13D-208ENST00000481484 C9orf84Q5VXU9 1444 aa6.8□□□□□ -1.32
VPS13D-208ENST00000481484 PHF12Q96QT6 1004 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms