RNA–Protein interactions for RNA: ENST00000481048.5

LRCH3-216, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 3

Gene LRCH3, Length 536 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-216ENST00000481048 MS4A4AQ96JQ5 239 aa12.98□□□□□ -0.33
LRCH3-216ENST00000481048 CECR2Q9BXF3 1484 aa12.97□□□□□ -0.33
LRCH3-216ENST00000481048 ECM2O94769 699 aaPredicted RBP12.97□□□□□ -0.33
LRCH3-216ENST00000481048 BCL11BQ9C0K0 894 aaPredicted RBP12.97□□□□□ -0.33
LRCH3-216ENST00000481048 FAM205CA6NFA0 338 aa12.95□□□□□ -0.34
LRCH3-216ENST00000481048 ZNF710Q8N1W2 664 aa12.94□□□□□ -0.34
LRCH3-216ENST00000481048 STK24Q9Y6E0 443 aa12.94□□□□□ -0.34
LRCH3-216ENST00000481048 DOK7Q18PE1 504 aa12.93□□□□□ -0.34
LRCH3-216ENST00000481048 HS3ST6Q96QI5 342 aa12.93□□□□□ -0.34
LRCH3-216ENST00000481048 TMEM92Q6UXU6 159 aa12.92□□□□□ -0.34
LRCH3-216ENST00000481048 POTEB3A0JP26 581 aa12.91□□□□□ -0.34
LRCH3-216ENST00000481048 NLRP6P59044 892 aa12.91□□□□□ -0.34
LRCH3-216ENST00000481048 POTEBQ6S5H4 581 aa12.91□□□□□ -0.34
LRCH3-216ENST00000481048 STK25O00506 426 aa12.9□□□□□ -0.34
LRCH3-216ENST00000481048 HOXB1P14653 301 aaPredicted RBP12.88□□□□□ -0.35
LRCH3-216ENST00000481048 PKD2Q13563 968 aa12.88□□□□□ -0.35
LRCH3-216ENST00000481048 SPNS2Q8IVW8 549 aa12.88□□□□□ -0.35
LRCH3-216ENST00000481048 FBXO22Q8NEZ5 403 aa12.86□□□□□ -0.35
LRCH3-216ENST00000481048 RIMBP2O15034 1052 aa12.85□□□□□ -0.35
LRCH3-216ENST00000481048 RGL2O15211 777 aa12.85□□□□□ -0.35
LRCH3-216ENST00000481048 MFRPQ9BY79 579 aa12.84□□□□□ -0.35
LRCH3-216ENST00000481048 MMRN1Q13201 1228 aa12.83□□□□□ -0.36
LRCH3-216ENST00000481048 ERBB3P21860 1342 aa12.82□□□□□ -0.36
LRCH3-216ENST00000481048 KRTAP3-3Q9BYR6 98 aa12.81□□□□□ -0.36
LRCH3-216ENST00000481048 KRTAP3-2Q9BYR7 98 aa12.81□□□□□ -0.36
LRCH3-216ENST00000481048 ZSWIM6Q9HCJ5 1215 aa12.77□□□□□ -0.37
LRCH3-216ENST00000481048 VARS2Q5ST30 1063 aaKnown RBP12.73□□□□□ -0.37
LRCH3-216ENST00000481048 GPR153Q6NV75 609 aa12.73□□□□□ -0.37
LRCH3-216ENST00000481048 ARSIQ5FYB1 569 aa12.69□□□□□ -0.38
LRCH3-216ENST00000481048 C2orf72A6NCS6 295 aa12.67□□□□□ -0.38
LRCH3-216ENST00000481048 KIF3CO14782 793 aa12.65□□□□□ -0.38
LRCH3-216ENST00000481048 KHSRPQ92945 711 aaKnown RBP eCLIP12.64□□□□□ -0.392e-9■■■□□ 15.6
LRCH3-216ENST00000481048 PPP1R37O75864 691 aa12.62□□□□□ -0.39
LRCH3-216ENST00000481048 ZNF687Q8N1G0 1237 aa12.62□□□□□ -0.39
LRCH3-216ENST00000481048 NCAPD3P42695 1498 aa12.61□□□□□ -0.39
LRCH3-216ENST00000481048 TMC2Q8TDI7 906 aa12.61□□□□□ -0.39
LRCH3-216ENST00000481048 ZNF316A6NFI3 1004 aaPredicted RBP12.58□□□□□ -0.4
LRCH3-216ENST00000481048 HS6ST3Q8IZP7 471 aa12.57□□□□□ -0.4
LRCH3-216ENST00000481048 ATAD2BQ9ULI0 1458 aa12.54□□□□□ -0.4
LRCH3-216ENST00000481048 SMARCA2P51531 1590 aa12.54□□□□□ -0.4
LRCH3-216ENST00000481048 NUDT7P0C024 238 aa12.53□□□□□ -0.4
LRCH3-216ENST00000481048 CHGAP10645 457 aaKnown RBP12.53□□□□□ -0.4
LRCH3-216ENST00000481048 SMARCA4P51532 1647 aa12.52□□□□□ -0.4
LRCH3-216ENST00000481048 SLC34A2O95436 690 aa12.52□□□□□ -0.41
LRCH3-216ENST00000481048 PCDHGA4Q9Y5G9 962 aa12.52□□□□□ -0.41
LRCH3-216ENST00000481048 HMGXB3Q12766 1538 aa12.51□□□□□ -0.41
LRCH3-216ENST00000481048 BAZ1AQ9NRL2 1556 aaPredicted RBP12.48□□□□□ -0.41
LRCH3-216ENST00000481048 ANKRD13DQ6ZTN6 518 aa12.48□□□□□ -0.41
LRCH3-216ENST00000481048 RNF166Q96A37 237 aaPredicted RBP12.48□□□□□ -0.41
LRCH3-216ENST00000481048 DNAJC5Q9H3Z4 198 aa12.47□□□□□ -0.41
LRCH3-216ENST00000481048 MYT1LQ9UL68 1186 aa12.47□□□□□ -0.41
LRCH3-216ENST00000481048 LHX6Q9UPM6 363 aa12.47□□□□□ -0.41
LRCH3-216ENST00000481048 CUX2O14529 1486 aa12.46□□□□□ -0.41
LRCH3-216ENST00000481048 PEG3Q9GZU2 1588 aa12.44□□□□□ -0.42
LRCH3-216ENST00000481048 ERCC6Q03468 1493 aa12.44□□□□□ -0.42
LRCH3-216ENST00000481048 FOXK1P85037 733 aa12.42□□□□□ -0.42
LRCH3-216ENST00000481048 GPHNQ9NQX3 736 aaPredicted RBP12.42□□□□□ -0.42
LRCH3-216ENST00000481048 LSM11P83369 360 aaKnown RBP eCLIP12.41□□□□□ -0.42
LRCH3-216ENST00000481048 NKX1-1Q15270 411 aaPredicted RBP12.41□□□□□ -0.42
LRCH3-216ENST00000481048 PLPP6Q8IY26 295 aa12.41□□□□□ -0.42
LRCH3-216ENST00000481048 BAZ1BQ9UIG0 1483 aaKnown RBP12.4□□□□□ -0.42
LRCH3-216ENST00000481048 PTGER2P43116 358 aa12.4□□□□□ -0.42
LRCH3-216ENST00000481048 PTCD2Q8WV60 388 aaKnown RBP12.39□□□□□ -0.43
LRCH3-216ENST00000481048 PBX2P40425 430 aa12.38□□□□□ -0.43
LRCH3-216ENST00000481048 DSG2Q14126 1118 aa12.38□□□□□ -0.43
LRCH3-216ENST00000481048 AXIN2Q9Y2T1 843 aa12.38□□□□□ -0.43
LRCH3-216ENST00000481048 POTEEQ6S8J3 1075 aa12.37□□□□□ -0.43
LRCH3-216ENST00000481048 RYDENQ9NUL5 291 aaKnown RBP12.35□□□□□ -0.43
LRCH3-216ENST00000481048 KDM4FA0A1W2PPD8 638 aa12.34□□□□□ -0.43
LRCH3-216ENST00000481048 MROH2BQ7Z745 1585 aa12.34□□□□□ -0.43
LRCH3-216ENST00000481048 NESP48681 1621 aa12.33□□□□□ -0.43
LRCH3-216ENST00000481048 PSDA5PKW4 1024 aaPredicted RBP12.33□□□□□ -0.44
LRCH3-216ENST00000481048 LAMC3Q9Y6N6 1575 aa12.33□□□□□ -0.44
LRCH3-216ENST00000481048 TBC1D12O60347 775 aa12.31□□□□□ -0.44
LRCH3-216ENST00000481048 ARHGAP33O14559 1287 aa12.29□□□□□ -0.44
LRCH3-216ENST00000481048 PDS5BQ9NTI5 1447 aa12.27□□□□□ -0.45
LRCH3-216ENST00000481048 CRISPLD2Q9H0B8 497 aa12.26□□□□□ -0.45
LRCH3-216ENST00000481048 PPP4R3BQ5MIZ7 849 aa12.24□□□□□ -0.45
LRCH3-216ENST00000481048 UPF1Q92900 1129 aaKnown RBP eCLIP12.24□□□□□ -0.45
LRCH3-216ENST00000481048 THOC2Q8NI27 1593 aaKnown RBP12.23□□□□□ -0.45
LRCH3-216ENST00000481048 ADGRD1Q6QNK2 874 aa12.23□□□□□ -0.45
LRCH3-216ENST00000481048 CADPSQ9ULU8 1353 aa12.22□□□□□ -0.45
LRCH3-216ENST00000481048 GTPBP6O43824 516 aaPredicted RBP12.22□□□□□ -0.45
LRCH3-216ENST00000481048 PSEN2P49810 448 aa12.22□□□□□ -0.45
LRCH3-216ENST00000481048 PPP1R15BQ5SWA1 713 aa12.22□□□□□ -0.45
LRCH3-216ENST00000481048 OXER1Q8TDS5 423 aa12.22□□□□□ -0.45
LRCH3-216ENST00000481048 KIF21AQ7Z4S6 1674 aa12.21□□□□□ -0.45
LRCH3-216ENST00000481048 WIZO95785 1651 aa12.2□□□□□ -0.46
LRCH3-216ENST00000481048 NCKAP5LQ9HCH0 1330 aa12.2□□□□□ -0.46
LRCH3-216ENST00000481048 PDE4AP27815 886 aa12.2□□□□□ -0.46
LRCH3-216ENST00000481048 DMRTA1Q5VZB9 504 aa12.2□□□□□ -0.46
LRCH3-216ENST00000481048 TK2O00142 265 aa12.17□□□□□ -0.46
LRCH3-216ENST00000481048 KCNK17Q96T54 332 aa12.15□□□□□ -0.46
LRCH3-216ENST00000481048 LARP6Q9BRS8 491 aaKnown RBP12.15□□□□□ -0.46
LRCH3-216ENST00000481048 ZNF454Q8N9F8 522 aa12.14□□□□□ -0.47
LRCH3-216ENST00000481048 KCNH8Q96L42 1107 aa12.14□□□□□ -0.47
LRCH3-216ENST00000481048 HRO43593 1189 aa12.13□□□□□ -0.47
LRCH3-216ENST00000481048 MRC2Q9UBG0 1479 aa12.11□□□□□ -0.47
LRCH3-216ENST00000481048 DDX27Q96GQ7 796 aaKnown RBP12.11□□□□□ -0.47
LRCH3-216ENST00000481048 HCSTQ9UBK5 93 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms