RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 SUPT16HQ9Y5B9 1047 aaKnown RBP15.85■□□□□ 0.13
PTPRE-208ENST00000479896 NCBP3Q53F19 620 aaKnown RBP15.84■□□□□ 0.13
PTPRE-208ENST00000479896 CALD1Q05682 793 aaKnown RBP15.84■□□□□ 0.13
PTPRE-208ENST00000479896 HSCBQ8IWL3 235 aa15.83■□□□□ 0.12
PTPRE-208ENST00000479896 CHMP4AQ9BY43 222 aa15.83■□□□□ 0.12
PTPRE-208ENST00000479896 ZNF330Q9Y3S2 320 aaPredicted RBP15.83■□□□□ 0.12
PTPRE-208ENST00000479896 CARMIL1Q5VZK9 1371 aa15.82■□□□□ 0.12
PTPRE-208ENST00000479896 PPP4R2Q9NY27 417 aa15.81■□□□□ 0.12
PTPRE-208ENST00000479896 SIN3AQ96ST3 1273 aa15.81■□□□□ 0.12
PTPRE-208ENST00000479896 L1TD1Q5T7N2 865 aaKnown RBP15.81■□□□□ 0.12
PTPRE-208ENST00000479896 CUX2O14529 1486 aa15.8■□□□□ 0.12
PTPRE-208ENST00000479896 IPO8O15397 1037 aaKnown RBP15.8■□□□□ 0.12
PTPRE-208ENST00000479896 KIAA1211Q6ZU35 1233 aa15.79■□□□□ 0.12
PTPRE-208ENST00000479896 EID1Q9Y6B2 187 aa15.79■□□□□ 0.12
PTPRE-208ENST00000479896 G3V3G9 751 aa15.77■□□□□ 0.11
PTPRE-208ENST00000479896 DCAF8Q5TAQ9 597 aa15.77■□□□□ 0.11
PTPRE-208ENST00000479896 EFCAB2Q5VUJ9 269 aa15.76■□□□□ 0.11
PTPRE-208ENST00000479896 ERICH6BQ5W0A0 696 aa15.76■□□□□ 0.11
PTPRE-208ENST00000479896 KTN1Q86UP2 1357 aaKnown RBP15.75■□□□□ 0.11
PTPRE-208ENST00000479896 KIAA2012Q0VF49 1180 aa15.75■□□□□ 0.11
PTPRE-208ENST00000479896 SPAG9O60271 1321 aaKnown RBP15.75■□□□□ 0.11
PTPRE-208ENST00000479896 EIF3AQ14152 1382 aaKnown RBP15.74■□□□□ 0.11
PTPRE-208ENST00000479896 GORABQ5T7V8 394 aa15.74■□□□□ 0.11
PTPRE-208ENST00000479896 BAZ1AQ9NRL2 1556 aaPredicted RBP15.74■□□□□ 0.11
PTPRE-208ENST00000479896 CHAF1AQ13111 956 aaPredicted RBP15.74■□□□□ 0.11
PTPRE-208ENST00000479896 TAF7LQ5H9L4 462 aa15.73■□□□□ 0.11
PTPRE-208ENST00000479896 HDAC5Q9UQL6 1122 aa15.73■□□□□ 0.11
PTPRE-208ENST00000479896 ARHGAP35Q9NRY4 1499 aa15.73■□□□□ 0.11
PTPRE-208ENST00000479896 PKD2Q13563 968 aa15.72■□□□□ 0.11
PTPRE-208ENST00000479896 DRC7Q8IY82 874 aa15.72■□□□□ 0.11
PTPRE-208ENST00000479896 PDS5BQ9NTI5 1447 aa15.72■□□□□ 0.11
PTPRE-208ENST00000479896 STK31Q9BXU1 1019 aa15.72■□□□□ 0.11
PTPRE-208ENST00000479896 GPATCH3Q96I76 525 aa15.71■□□□□ 0.11
PTPRE-208ENST00000479896 APBB1O00213 710 aa15.71■□□□□ 0.1
PTPRE-208ENST00000479896 TIMELESSQ9UNS1 1208 aa15.71■□□□□ 0.1
PTPRE-208ENST00000479896 U2AF1L5P0DN76 240 aaPredicted RBP15.7■□□□□ 0.1
PTPRE-208ENST00000479896 U2AF1Q01081 240 aaKnown RBP eCLIP15.7■□□□□ 0.1
PTPRE-208ENST00000479896 CHMP3Q9Y3E7 222 aa15.7■□□□□ 0.1
PTPRE-208ENST00000479896 HTATSF1O43719 755 aaKnown RBP15.7■□□□□ 0.1
PTPRE-208ENST00000479896 ROCK2O75116 1388 aaKnown RBP15.69■□□□□ 0.1
PTPRE-208ENST00000479896 NAP1L5Q96NT1 182 aaPredicted RBP15.69■□□□□ 0.1
PTPRE-208ENST00000479896 TERF2IPQ9NYB0 399 aa15.68■□□□□ 0.1
PTPRE-208ENST00000479896 NGDNQ8NEJ9 315 aaKnown RBP15.67■□□□□ 0.1
PTPRE-208ENST00000479896 ANKRD30AQ9BXX3 1397 aa15.67■□□□□ 0.1
PTPRE-208ENST00000479896 ITPRIPQ8IWB1 547 aa15.66■□□□□ 0.1
PTPRE-208ENST00000479896 NOP58Q9Y2X3 529 aaKnown RBP15.65■□□□□ 0.1
PTPRE-208ENST00000479896 SETD5Q9C0A6 1442 aa15.65■□□□□ 0.1
PTPRE-208ENST00000479896 CCDC34Q96HJ3 373 aa15.64■□□□□ 0.09
PTPRE-208ENST00000479896 RWDD1Q9H446 243 aaPredicted RBP15.64■□□□□ 0.09
PTPRE-208ENST00000479896 KIF3BO15066 747 aa15.64■□□□□ 0.09
PTPRE-208ENST00000479896 HSPA5P11021 654 aaKnown RBP15.64■□□□□ 0.09
PTPRE-208ENST00000479896 NUP155O75694 1391 aa15.63■□□□□ 0.09
PTPRE-208ENST00000479896 PTMSP20962 102 aa15.63■□□□□ 0.09
PTPRE-208ENST00000479896 GTF2E1P29083 439 aaPredicted RBP15.63■□□□□ 0.09
PTPRE-208ENST00000479896 AMPHP49418 695 aa15.63■□□□□ 0.09
PTPRE-208ENST00000479896 HMMRO75330 724 aa15.62■□□□□ 0.09
PTPRE-208ENST00000479896 MSNP26038 577 aaKnown RBP15.62■□□□□ 0.09
PTPRE-208ENST00000479896 LMOD3Q0VAK6 560 aa15.62■□□□□ 0.09
PTPRE-208ENST00000479896 RALBP1Q15311 655 aa15.62■□□□□ 0.09
PTPRE-208ENST00000479896 WASHC2CQ9Y4E1 1318 aa15.61■□□□□ 0.09
PTPRE-208ENST00000479896 HSP90B1P14625 803 aaKnown RBP15.61■□□□□ 0.09
PTPRE-208ENST00000479896 TPM4P67936 248 aa15.61■□□□□ 0.09
PTPRE-208ENST00000479896 PRM3Q9NNZ6 103 aa15.61■□□□□ 0.09
PTPRE-208ENST00000479896 SOGA1O94964 1423 aa15.6■□□□□ 0.09
PTPRE-208ENST00000479896 NOC3LQ8WTT2 800 aaKnown RBP15.6■□□□□ 0.09
PTPRE-208ENST00000479896 SPRYD3Q8NCJ5 442 aa15.6■□□□□ 0.09
PTPRE-208ENST00000479896 FRAT2O75474 233 aaPredicted RBP15.6■□□□□ 0.09
PTPRE-208ENST00000479896 B4GALNT3Q6L9W6 998 aa15.6■□□□□ 0.09
PTPRE-208ENST00000479896 FMN1Q68DA7 1419 aa15.59■□□□□ 0.09
PTPRE-208ENST00000479896 CCER2I3L3R5 266 aa15.59■□□□□ 0.09
PTPRE-208ENST00000479896 RASSF8Q8NHQ8 419 aa15.58■□□□□ 0.08
PTPRE-208ENST00000479896 GBP4Q96PP9 640 aa15.57■□□□□ 0.08
PTPRE-208ENST00000479896 RSPH4AQ5TD94 716 aa15.56■□□□□ 0.08
PTPRE-208ENST00000479896 PMFBP1Q8TBY8 1022 aa15.56■□□□□ 0.08
PTPRE-208ENST00000479896 TRIM6-TRIM34B2RNG4 842 aa15.56■□□□□ 0.08
PTPRE-208ENST00000479896 FOXD1Q16676 465 aa15.55■□□□□ 0.08
PTPRE-208ENST00000479896 SYAP1Q96A49 352 aaPredicted RBP15.55■□□□□ 0.08
PTPRE-208ENST00000479896 MPHOSPH9Q99550 1183 aa15.55■□□□□ 0.08
PTPRE-208ENST00000479896 LTV1Q96GA3 475 aaPredicted RBP15.55■□□□□ 0.08
PTPRE-208ENST00000479896 SMC4Q9NTJ3 1288 aa15.55■□□□□ 0.08
PTPRE-208ENST00000479896 EVA1CP58658 441 aa15.54■□□□□ 0.08
PTPRE-208ENST00000479896 VPS53Q5VIR6 699 aa15.54■□□□□ 0.08
PTPRE-208ENST00000479896 MARCH6O60337 910 aa15.54■□□□□ 0.08
PTPRE-208ENST00000479896 SLC4A10Q6U841 1118 aa15.54■□□□□ 0.08
PTPRE-208ENST00000479896 NUTM2DQ5VT03 806 aaPredicted RBP15.53■□□□□ 0.08
PTPRE-208ENST00000479896 TOMM22Q9NS69 142 aa15.53■□□□□ 0.08
PTPRE-208ENST00000479896 CSPP1Q1MSJ5 1256 aa15.52■□□□□ 0.08
PTPRE-208ENST00000479896 SMARCA2P51531 1590 aa15.52■□□□□ 0.08
PTPRE-208ENST00000479896 TDRD9Q8NDG6 1382 aaKnown RBP15.52■□□□□ 0.07
PTPRE-208ENST00000479896 MSH5O43196 834 aa15.52■□□□□ 0.07
PTPRE-208ENST00000479896 HNRNPMP52272 730 aaKnown RBP eCLIP15.52■□□□□ 0.07
PTPRE-208ENST00000479896 AEBP2Q6ZN18 517 aaPredicted RBP15.52■□□□□ 0.07
PTPRE-208ENST00000479896 RCAN3Q9UKA8 241 aa15.52■□□□□ 0.07
PTPRE-208ENST00000479896 MEX3CQ5U5Q3 659 aaKnown RBP15.51■□□□□ 0.07
PTPRE-208ENST00000479896 C1orf141Q5JVX7 400 aa15.51■□□□□ 0.07
PTPRE-208ENST00000479896 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.51■□□□□ 0.07
PTPRE-208ENST00000479896 CECR2Q9BXF3 1484 aa15.5■□□□□ 0.07
PTPRE-208ENST00000479896 MYO15BQ96JP2 1530 aa15.49■□□□□ 0.07
PTPRE-208ENST00000479896 CEP89Q96ST8 783 aa15.49■□□□□ 0.07
PTPRE-208ENST00000479896 KIF3AQ9Y496 699 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms