RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-222ENST00000478095 KDM6BO15054 1643 aa16.25■□□□□ 0.19
HDAC6-222ENST00000478095 MTUS2Q5JR59 1369 aa16.25■□□□□ 0.19
HDAC6-222ENST00000478095 COL17A1Q9UMD9 1497 aaPredicted RBP16.24■□□□□ 0.19
HDAC6-222ENST00000478095 NPM3O75607 178 aaKnown RBP16.22■□□□□ 0.19
HDAC6-222ENST00000478095 PLCH2O75038 1416 aa16.2■□□□□ 0.18
HDAC6-222ENST00000478095 FANCAO15360 1455 aa16.2■□□□□ 0.18
HDAC6-222ENST00000478095 DCAF8L1A6NGE4 600 aa16.19■□□□□ 0.18
HDAC6-222ENST00000478095 TIAM1Q13009 1591 aa16.18■□□□□ 0.18
HDAC6-222ENST00000478095 NEO1Q92859 1461 aa16.18■□□□□ 0.18
HDAC6-222ENST00000478095 EHBP1L1Q8N3D4 1523 aa16.18■□□□□ 0.18
HDAC6-222ENST00000478095 AKNAQ7Z591 1439 aa16.17■□□□□ 0.18
HDAC6-222ENST00000478095 KANK4Q5T7N3 995 aaPredicted RBP16.16■□□□□ 0.18
HDAC6-222ENST00000478095 PHLDB1Q86UU1 1377 aa16.15■□□□□ 0.18
HDAC6-222ENST00000478095 ARHGAP5Q13017 1502 aa16.15■□□□□ 0.18
HDAC6-222ENST00000478095 RAPGEF3O95398 923 aa16.15■□□□□ 0.18
HDAC6-222ENST00000478095 APLP2Q06481 763 aa16.15■□□□□ 0.18
HDAC6-222ENST00000478095 EFCAB2Q5VUJ9 269 aa16.15■□□□□ 0.18
HDAC6-222ENST00000478095 ARAP3Q8WWN8 1544 aa16.14■□□□□ 0.18
HDAC6-222ENST00000478095 LRRC9Q6ZRR7 1453 aa16.14■□□□□ 0.17
HDAC6-222ENST00000478095 CCNB3Q8WWL7 1395 aa16.13■□□□□ 0.17
HDAC6-222ENST00000478095 ADGRL1O94910 1474 aa16.12■□□□□ 0.17
HDAC6-222ENST00000478095 MYO5CQ9NQX4 1742 aa16.12■□□□□ 0.17
HDAC6-222ENST00000478095 MAP3K1Q13233 1512 aa16.12■□□□□ 0.17
HDAC6-222ENST00000478095 GPATCH8Q9UKJ3 1502 aaKnown RBP16.11■□□□□ 0.17
HDAC6-222ENST00000478095 ZNF777Q9ULD5 760 aaPredicted RBP16.11■□□□□ 0.17
HDAC6-222ENST00000478095 SCAPERQ9BY12 1400 aa16.11■□□□□ 0.17
HDAC6-222ENST00000478095 DENND4BO75064 1496 aaPredicted RBP16.1■□□□□ 0.17
HDAC6-222ENST00000478095 NCOA2Q15596 1464 aa16.1■□□□□ 0.17
HDAC6-222ENST00000478095 CFAP74Q9C0B2 1584 aa16.1■□□□□ 0.17
HDAC6-222ENST00000478095 PREX2Q70Z35 1606 aa16.09■□□□□ 0.17
HDAC6-222ENST00000478095 CFDP1Q9UEE9 299 aaPredicted RBP16.09■□□□□ 0.17
HDAC6-222ENST00000478095 FRMPD1Q5SYB0 1578 aa16.07■□□□□ 0.16
HDAC6-222ENST00000478095 POGZQ7Z3K3 1410 aa16.06■□□□□ 0.16
HDAC6-222ENST00000478095 SUPT6HQ7KZ85 1726 aaKnown RBP16.05■□□□□ 0.16
HDAC6-222ENST00000478095 CDC42BPBQ9Y5S2 1711 aa16.05■□□□□ 0.16
HDAC6-222ENST00000478095 CDC42BPAQ5VT25 1732 aa16.05■□□□□ 0.16
HDAC6-222ENST00000478095 ZNF644Q9H582 1327 aaPredicted RBP16.04■□□□□ 0.16
HDAC6-222ENST00000478095 ARHGEF12Q9NZN5 1544 aa16.04■□□□□ 0.16
HDAC6-222ENST00000478095 AFAP1Q8N556 730 aa16.03■□□□□ 0.16
HDAC6-222ENST00000478095 ABCC1P33527 1531 aa16.03■□□□□ 0.16
HDAC6-222ENST00000478095 SAMD9LQ8IVG5 1584 aa16.02■□□□□ 0.16
HDAC6-222ENST00000478095 TRAPPC8Q9Y2L5 1435 aa16.02■□□□□ 0.15
HDAC6-222ENST00000478095 HNRNPMP52272 730 aaKnown RBP eCLIP16.01■□□□□ 0.15
HDAC6-222ENST00000478095 SYCP2Q9BX26 1530 aa16■□□□□ 0.15
HDAC6-222ENST00000478095 ZNF518AQ6AHZ1 1483 aa16■□□□□ 0.15
HDAC6-222ENST00000478095 PPARGC1BQ86YN6 1023 aaKnown RBP16■□□□□ 0.15
HDAC6-222ENST00000478095 RICTORQ6R327 1708 aa15.99■□□□□ 0.15
HDAC6-222ENST00000478095 YEATS2Q9ULM3 1422 aa15.99■□□□□ 0.15
HDAC6-222ENST00000478095 MYT1LQ9UL68 1186 aa15.98■□□□□ 0.15
HDAC6-222ENST00000478095 ITSN2Q9NZM3 1697 aa15.98■□□□□ 0.15
HDAC6-222ENST00000478095 ZMYM4Q5VZL5 1548 aa15.98■□□□□ 0.15
HDAC6-222ENST00000478095 MYOM3Q5VTT5 1437 aa15.97■□□□□ 0.15
HDAC6-222ENST00000478095 PLEKHH2Q8IVE3 1493 aa15.97■□□□□ 0.15
HDAC6-222ENST00000478095 KIAA1107Q9UPP5 1409 aa15.96■□□□□ 0.15
HDAC6-222ENST00000478095 ZFYVE16Q7Z3T8 1539 aa15.96■□□□□ 0.15
HDAC6-222ENST00000478095 CAMSAP2Q08AD1 1489 aa15.96■□□□□ 0.14
HDAC6-222ENST00000478095 ARHGEF40Q8TER5 1519 aa15.95■□□□□ 0.14
HDAC6-222ENST00000478095 KDM5CP41229 1560 aa15.95■□□□□ 0.14
HDAC6-222ENST00000478095 MAGI2Q86UL8 1455 aa15.94■□□□□ 0.14
HDAC6-222ENST00000478095 MBD5Q9P267 1494 aa15.93■□□□□ 0.14
HDAC6-222ENST00000478095 MIA2Q96PC5 1412 aa15.92■□□□□ 0.14
HDAC6-222ENST00000478095 SPAG9O60271 1321 aaKnown RBP15.92■□□□□ 0.14
HDAC6-222ENST00000478095 ARID4BQ4LE39 1312 aaPredicted RBP15.92■□□□□ 0.14
HDAC6-222ENST00000478095 HECW2Q9P2P5 1572 aa15.91■□□□□ 0.14
HDAC6-222ENST00000478095 MLH3Q9UHC1 1453 aa15.91■□□□□ 0.14
HDAC6-222ENST00000478095 KDM4FA0A1W2PPD8 638 aa15.9■□□□□ 0.14
HDAC6-222ENST00000478095 FGD6Q6ZV73 1430 aa15.9■□□□□ 0.14
HDAC6-222ENST00000478095 ATP10AO60312 1499 aa15.88■□□□□ 0.13
HDAC6-222ENST00000478095 CCDC141Q6ZP82 1450 aa15.88■□□□□ 0.13
HDAC6-222ENST00000478095 C9orf84Q5VXU9 1444 aa15.87■□□□□ 0.13
HDAC6-222ENST00000478095 DIP2CQ9Y2E4 1556 aa15.87■□□□□ 0.13
HDAC6-222ENST00000478095 ABCA6Q8N139 1617 aa15.86■□□□□ 0.13
HDAC6-222ENST00000478095 ATP7AQ04656 1500 aa15.85■□□□□ 0.13
HDAC6-222ENST00000478095 PTPN23Q9H3S7 1636 aa15.84■□□□□ 0.13
HDAC6-222ENST00000478095 MLECQ14165 292 aa15.84■□□□□ 0.13
HDAC6-222ENST00000478095 FAM50AQ14320 339 aaKnown RBP15.84■□□□□ 0.13
HDAC6-222ENST00000478095 RSPH4AQ5TD94 716 aa15.84■□□□□ 0.13
HDAC6-222ENST00000478095 TCOF1Q13428 1488 aaKnown RBP15.84■□□□□ 0.13
HDAC6-222ENST00000478095 INO80Q9ULG1 1556 aaPredicted RBP15.83■□□□□ 0.13
HDAC6-222ENST00000478095 KIDINS220Q9ULH0 1771 aa15.83■□□□□ 0.12
HDAC6-222ENST00000478095 TSPY4P0CV99 314 aa15.83■□□□□ 0.12
HDAC6-222ENST00000478095 TSPY10P0CW01 314 aa15.83■□□□□ 0.12
HDAC6-222ENST00000478095 ARHGEF5Q12774 1597 aa15.83■□□□□ 0.12
HDAC6-222ENST00000478095 SIGLEC1Q9BZZ2 1709 aa15.82■□□□□ 0.12
HDAC6-222ENST00000478095 RTEL1-TNFRSF6BF6WH68 1400 aa15.81■□□□□ 0.12
HDAC6-222ENST00000478095 ABCC5O15440 1437 aa15.8■□□□□ 0.12
HDAC6-222ENST00000478095 A2MP01023 1474 aa15.78■□□□□ 0.12
HDAC6-222ENST00000478095 DAPK1P53355 1430 aa15.78■□□□□ 0.12
HDAC6-222ENST00000478095 CHIC2Q9UKJ5 165 aa15.77■□□□□ 0.12
HDAC6-222ENST00000478095 REREQ9P2R6 1566 aa15.77■□□□□ 0.11
HDAC6-222ENST00000478095 BCORL1Q5H9F3 1711 aa15.76■□□□□ 0.11
HDAC6-222ENST00000478095 AGLP35573 1532 aa15.74■□□□□ 0.11
HDAC6-222ENST00000478095 SHANK2Q9UPX8 1470 aa15.74■□□□□ 0.11
HDAC6-222ENST00000478095 DNMT1P26358 1616 aaKnown RBP15.74■□□□□ 0.11
HDAC6-222ENST00000478095 PLXNC1O60486 1568 aa15.74■□□□□ 0.11
HDAC6-222ENST00000478095 MAST1Q9Y2H9 1570 aa15.74■□□□□ 0.11
HDAC6-222ENST00000478095 DHX29Q7Z478 1369 aaKnown RBP15.74■□□□□ 0.11
HDAC6-222ENST00000478095 ADAMTSL3P82987 1691 aa15.73■□□□□ 0.11
HDAC6-222ENST00000478095 MADDQ8WXG6 1647 aa15.73■□□□□ 0.11
HDAC6-222ENST00000478095 ITGAEP38570 1179 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms