RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 PRG4Q92954 1404 aaPredicted RBP11.76□□□□□ -0.53
VMA21-203ENST00000477649 TCOF1Q13428 1488 aaKnown RBP11.76□□□□□ -0.53
VMA21-203ENST00000477649 ABCA8O94911 1581 aa11.75□□□□□ -0.53
VMA21-203ENST00000477649 PTPRGP23470 1445 aa11.75□□□□□ -0.53
VMA21-203ENST00000477649 TROQ12816 1431 aaPredicted RBP11.75□□□□□ -0.53
VMA21-203ENST00000477649 SETD5Q9C0A6 1442 aa11.75□□□□□ -0.53
VMA21-203ENST00000477649 CHD1O14646 1710 aa11.74□□□□□ -0.53
VMA21-203ENST00000477649 AKT1S1Q96B36 256 aa11.74□□□□□ -0.53
VMA21-203ENST00000477649 CDK13Q14004 1512 aaKnown RBP11.73□□□□□ -0.53
VMA21-203ENST00000477649 MAGI3Q5TCQ9 1506 aa11.73□□□□□ -0.53
VMA21-203ENST00000477649 SAMD1Q6SPF0 538 aaPredicted RBP11.73□□□□□ -0.53
VMA21-203ENST00000477649 PLB1Q6P1J6 1458 aa11.72□□□□□ -0.53
VMA21-203ENST00000477649 CLASP1Q7Z460 1538 aa11.71□□□□□ -0.53
VMA21-203ENST00000477649 AKNAQ7Z591 1439 aa11.71□□□□□ -0.53
VMA21-203ENST00000477649 DHX57Q6P158 1386 aaKnown RBP11.71□□□□□ -0.53
VMA21-203ENST00000477649 PLEKHD1A6NEE1 506 aa11.7□□□□□ -0.54
VMA21-203ENST00000477649 PTPN23Q9H3S7 1636 aa11.7□□□□□ -0.54
VMA21-203ENST00000477649 HFM1A2PYH4 1435 aa11.69□□□□□ -0.54
VMA21-203ENST00000477649 RAB3GAP2Q9H2M9 1393 aa11.69□□□□□ -0.54
VMA21-203ENST00000477649 ADCY10Q96PN6 1610 aa11.69□□□□□ -0.54
VMA21-203ENST00000477649 UACAQ9BZF9 1416 aa11.69□□□□□ -0.54
VMA21-203ENST00000477649 ITGAEP38570 1179 aa11.68□□□□□ -0.54
VMA21-203ENST00000477649 ATP10BO94823 1461 aa11.67□□□□□ -0.54
VMA21-203ENST00000477649 UHRF1BP1LA0JNW5 1464 aa11.66□□□□□ -0.54
VMA21-203ENST00000477649 POLA2Q14181 598 aa11.66□□□□□ -0.54
VMA21-203ENST00000477649 ITSN2Q9NZM3 1697 aa11.65□□□□□ -0.54
VMA21-203ENST00000477649 TIMELESSQ9UNS1 1208 aa11.65□□□□□ -0.54
VMA21-203ENST00000477649 ROCK1Q13464 1354 aa11.65□□□□□ -0.55
VMA21-203ENST00000477649 KIF14Q15058 1648 aa11.64□□□□□ -0.55
VMA21-203ENST00000477649 EVX2Q03828 476 aa11.63□□□□□ -0.55
VMA21-203ENST00000477649 ABCC2Q92887 1545 aa11.63□□□□□ -0.55
VMA21-203ENST00000477649 REM2Q8IYK8 340 aaPredicted RBP11.62□□□□□ -0.55
VMA21-203ENST00000477649 GPATCH8Q9UKJ3 1502 aaKnown RBP11.61□□□□□ -0.55
VMA21-203ENST00000477649 FXR2P51116 673 aaKnown RBP eCLIP11.61□□□□□ -0.55
VMA21-203ENST00000477649 CFDP1Q9UEE9 299 aaPredicted RBP11.61□□□□□ -0.55
VMA21-203ENST00000477649 NAIPQ13075 1403 aa11.6□□□□□ -0.55
VMA21-203ENST00000477649 ABCC10Q5T3U5 1492 aa11.6□□□□□ -0.55
VMA21-203ENST00000477649 RSPH4AQ5TD94 716 aa11.6□□□□□ -0.55
VMA21-203ENST00000477649 PTPRKQ15262 1439 aa11.6□□□□□ -0.55
VMA21-203ENST00000477649 ARID3CA6NKF2 412 aa11.59□□□□□ -0.55
VMA21-203ENST00000477649 DNMT1P26358 1616 aaKnown RBP11.59□□□□□ -0.55
VMA21-203ENST00000477649 DAPK1P53355 1430 aa11.59□□□□□ -0.55
VMA21-203ENST00000477649 OSCARQ8IYS5 282 aa11.57□□□□□ -0.56
VMA21-203ENST00000477649 ABCC5O15440 1437 aa11.57□□□□□ -0.56
VMA21-203ENST00000477649 CAMSAP2Q08AD1 1489 aa11.57□□□□□ -0.56
VMA21-203ENST00000477649 KDM5BQ9UGL1 1544 aa11.56□□□□□ -0.56
VMA21-203ENST00000477649 GCC2Q8IWJ2 1684 aa11.56□□□□□ -0.56
VMA21-203ENST00000477649 SHANK2Q9UPX8 1470 aa11.56□□□□□ -0.56
VMA21-203ENST00000477649 ADGRL2O95490 1459 aa11.55□□□□□ -0.56
VMA21-203ENST00000477649 PLEKHH2Q8IVE3 1493 aa11.55□□□□□ -0.56
VMA21-203ENST00000477649 MAPKBP1O60336 1514 aa11.54□□□□□ -0.56
VMA21-203ENST00000477649 ZNF316A6NFI3 1004 aaPredicted RBP11.53□□□□□ -0.56
VMA21-203ENST00000477649 LHX8Q68G74 356 aa11.53□□□□□ -0.56
VMA21-203ENST00000477649 ERCC6L2Q5T890 1561 aa11.53□□□□□ -0.56
VMA21-203ENST00000477649 RIMBP3CA6NJZ7 1639 aa11.53□□□□□ -0.56
VMA21-203ENST00000477649 RIMBP3BA6NNM3 1639 aa11.53□□□□□ -0.56
VMA21-203ENST00000477649 ANKRD30AQ9BXX3 1397 aa11.53□□□□□ -0.56
VMA21-203ENST00000477649 RIMBP3Q9UFD9 1639 aa11.53□□□□□ -0.56
VMA21-203ENST00000477649 ARHGEF5Q12774 1597 aa11.52□□□□□ -0.57
VMA21-203ENST00000477649 CDC42BPAQ5VT25 1732 aa11.51□□□□□ -0.57
VMA21-203ENST00000477649 KIAA1107Q9UPP5 1409 aa11.51□□□□□ -0.57
VMA21-203ENST00000477649 ARAP3Q8WWN8 1544 aa11.5□□□□□ -0.57
VMA21-203ENST00000477649 PREX2Q70Z35 1606 aa11.5□□□□□ -0.57
VMA21-203ENST00000477649 PITPNM1O00562 1244 aa11.5□□□□□ -0.57
VMA21-203ENST00000477649 TSPY4P0CV99 314 aa11.5□□□□□ -0.57
VMA21-203ENST00000477649 TSPY10P0CW01 314 aa11.5□□□□□ -0.57
VMA21-203ENST00000477649 NCOA1Q15788 1441 aa11.5□□□□□ -0.57
VMA21-203ENST00000477649 PLSCR2Q9NRY7 297 aa11.49□□□□□ -0.57
VMA21-203ENST00000477649 RRP7BPQ9NSQ0 103 aa11.49□□□□□ -0.57
VMA21-203ENST00000477649 ADGBQ8N7X0 1667 aa11.49□□□□□ -0.57
VMA21-203ENST00000477649 CHIC2Q9UKJ5 165 aa11.48□□□□□ -0.57
VMA21-203ENST00000477649 ZNF644Q9H582 1327 aaPredicted RBP11.48□□□□□ -0.57
VMA21-203ENST00000477649 ZCCHC11Q5TAX3 1644 aaKnown RBP11.48□□□□□ -0.57
VMA21-203ENST00000477649 CROCC2H7BZ55 1655 aa11.47□□□□□ -0.57
VMA21-203ENST00000477649 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.47□□□□□ -0.57
VMA21-203ENST00000477649 CCDC141Q6ZP82 1450 aa11.47□□□□□ -0.57
VMA21-203ENST00000477649 PLCH2O75038 1416 aa11.47□□□□□ -0.57
VMA21-203ENST00000477649 ZNF777Q9ULD5 760 aaPredicted RBP11.47□□□□□ -0.57
VMA21-203ENST00000477649 MBD5Q9P267 1494 aa11.46□□□□□ -0.57
VMA21-203ENST00000477649 C9orf84Q5VXU9 1444 aa11.46□□□□□ -0.57
VMA21-203ENST00000477649 EFCAB2Q5VUJ9 269 aa11.45□□□□□ -0.58
VMA21-203ENST00000477649 ARHGAP5Q13017 1502 aa11.45□□□□□ -0.58
VMA21-203ENST00000477649 WDR7Q9Y4E6 1490 aa11.44□□□□□ -0.58
VMA21-203ENST00000477649 MYO5CQ9NQX4 1742 aa11.44□□□□□ -0.58
VMA21-203ENST00000477649 NPM1P06748 294 aaKnown RBP eCLIP11.44□□□□□ -0.58
VMA21-203ENST00000477649 TRIM52Q96A61 297 aa11.44□□□□□ -0.58
VMA21-203ENST00000477649 MAST1Q9Y2H9 1570 aa11.44□□□□□ -0.58
VMA21-203ENST00000477649 MPHOSPH9Q99550 1183 aa11.43□□□□□ -0.58
VMA21-203ENST00000477649 ANKRD50Q9ULJ7 1429 aa11.43□□□□□ -0.58
VMA21-203ENST00000477649 TONSLQ96HA7 1378 aa11.42□□□□□ -0.58
VMA21-203ENST00000477649 SAMD9LQ8IVG5 1584 aa11.42□□□□□ -0.58
VMA21-203ENST00000477649 CDC42BPBQ9Y5S2 1711 aa11.42□□□□□ -0.58
VMA21-203ENST00000477649 TTC37Q6PGP7 1564 aa11.41□□□□□ -0.58
VMA21-203ENST00000477649 DIEXFQ68CQ4 756 aaKnown RBP11.41□□□□□ -0.58
VMA21-203ENST00000477649 KIF15Q9NS87 1388 aa11.4□□□□□ -0.59
VMA21-203ENST00000477649 PPP1R15AO75807 674 aaPredicted RBP11.39□□□□□ -0.59
VMA21-203ENST00000477649 KDM5DQ9BY66 1539 aa11.39□□□□□ -0.59
VMA21-203ENST00000477649 RTEL1-TNFRSF6BF6WH68 1400 aa11.38□□□□□ -0.59
VMA21-203ENST00000477649 HNRNPMP52272 730 aaKnown RBP eCLIP11.38□□□□□ -0.59
VMA21-203ENST00000477649 NEUROD1Q13562 356 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms